| Ectophoma sp. | RD005831, RD050495, RD050502, RD050503, RD050505, RD050514, RD050758, RD050762, RD054063, RD054064, RD054782, RD059093, RD059100, RD059105, RD059121, RD059859, RD059958 |
| Edenia sp. | RD000509, RD054800 |
| Edmundmasonia sp. | RD003353 |
| Effuseotrichosporon sp. | RD003407 |
| Eggerthella sp. | RD014170, RD014171, RD014172, RD014173, RD014174, RD014175, RD014176, RD014177, RD014178, RD014179, RD014180, RD014586, RD014935, RD015163 |
| Eggerthia sp. | RD014914 |
| Eisenbergiella sp. | RD015164 |
| Elaphocordyceps sp. | RD001138, RD001973, RD005936, RD005965, RD053985, RD058649, RD060803 |
| Eleutherascus sp. | RD055759, RD056204, RD058720, RD060386 |
| Ellisembia sp. | RD052036, RD052398, RD052499, RD053238, RD057847 |
| Embleya sp. | RD003609, RD007062, RD007137, RD007310, RD007391, RD007885, RD062571, RD064098, RD066000, RD068744 |
| Emericellopsis sp. | RD005783, RD050626, RD050631, RD050895, RD055435, RD055445, RD055458, RD056149, RD056230, RD056268, RD056757, RD056905, RD056922, RD058599, RD059245, RD059256, RD059270, RD059436, RD059483, RD059831, RD060149, RD060174, RD060886, RD060906, RD061319, RD061320 |
| Empedobacter sp. | RD012542 |
| Endophragmiella sp. | RD001002, RD051810, RD059660 |
| Enterobacter sp. | RD000183, RD012339, RD014259, RD014260, RD014380, RD014381, RD014382, RD014383, RD014384, RD014385 |
| Enterocarpus sp. | RD058458, RD058517, RD058533, RD059011, RD059235 |
| Enterocloster sp. | RD014215, RD015155, RD015156, RD015158, RD015159, RD015182 |
| Enterococcus sp. | RD000210, RD000212, RD011244, RD011721, RD011794, RD011799, RD011806, RD011809, RD011813, RD011827, RD011833, RD011838, RD012096, RD012097, RD012099, RD012122, RD012124, RD012125, RD012132, RD012133, RD012134, RD012136, RD012137, RD012139, RD012324, RD012327, RD012328, RD012522, RD012533, RD012543, RD012544, RD012545, RD012550, RD012561, RD012568, RD012570, RD012592, RD014130, RD014204, RD014206, RD014207, RD014208, RD014209, RD014266, RD014267, RD014268, RD014269, RD014270, RD014271, RD014272, RD014273, RD014274, RD014275, RD014276, RD014277, RD014278, RD014279, RD014280, RD014555, RD014556, RD014957, RD014963, RD014964, RD015414, RD015421, RD015422, RD015431, RD015432, RD015434, RD015435, RD015436, RD015439, RD015440, RD015441, RD015442, RD015443, RD015444, RD015445, RD015446, RD015447, RD015450, RD015451, RD015452, RD015453, RD015454, RD015574, RD015582, RD015595, RD015597, RD015598, RD015599, RD015600, RD015609, RD015610, RD015620, RD015621, RD015629, RD015634, RD015637, RD015640, RD015641, RD015668, RD015669, RD015671, RD015677, RD015679, RD015681, RD015682, RD015686, RD015690, RD015691, RD015695, RD015696, RD015697, RD055228, RD055232, RD055233, RD055234, RD055268, RD055281, RD055288, RD055290, RD055292, RD055293, RD055296, RD055300, RD055301, RD055303, RD055313, RD055326 |
| Enterovibrio sp. | RD000568, RD001688 |
| Enterovirga sp. | RD013379 |
| Epibacterium sp. | RD000619, RD001717, RD002687, RD006353 |
| Epicoccum sp. | RD000232, RD000235, RD000238, RD000304, RD000311, RD000316, RD000317, RD000320, RD000324, RD000325, RD000326, RD000327, RD000328, RD000329, RD000338, RD000339, RD000349, RD000360, RD000362, RD000364, RD000365, RD000368, RD000371, RD000386, RD000440, RD000462, RD000490, RD000495, RD002283, RD013147, RD013149, RD050593, RD050825, RD051165, RD051265, RD051480, RD051541, RD051555, RD051603, RD053260, RD053261, RD056050, RD056291, RD056768, RD056850, RD057007, RD057099, RD057968, RD058091, RD058377, RD058670, RD059102, RD059185, RD060684, RD061282, RD069278 |
| Epicoleosporium sp. | RD050855, RD054001 |
| Erwinia sp. | RD012317, RD014389, RD014390, RD014391, RD014392, RD014393, RD014394, RD014395, RD014396, RD014397, RD014398, RD014399, RD014400, RD014401 |
| Erythrobacter sp. | RD001725, RD002022, RD002062, RD002793, RD002796, RD002797, RD002803, RD002811, RD002818, RD002866, RD003112, RD003489, RD003502, RD003537, RD006358, RD006360, RD006374, RD006378, RD006388, RD008714, RD013368, RD013369 |
| Erythrobasidium sp. | RD009834, RD012028, RD012046, RD012051, RD012382, RD050989 |
| Escherichia sp. | RD012323, RD014262, RD014263, RD014577 |
| Eutypa sp. | RD055195, RD061314 |
| Eutypella sp. | RD009206, RD054662, RD061130, RD061204 |
| Euzebyella sp. | RD000689 |
| Ewingella sp. | RD012142, RD014421, RD014422 |
| Exidia sp. | RD010409, RD010410, RD010464, RD010549, RD010550 |
| Exiguobacterium sp. | RD011788, RD011789, RD011796, RD014374, RD014375 |
| Exobasidium sp. | RD010313, RD010314, RD010315, RD010316, RD010317, RD051117 |
| Exophiala sp. | RD000508, RD001161, RD001949, RD003318, RD006018, RD009113, RD009158, RD009534, RD009537, RD009722, RD012070, RD012808, RD050646, RD050683, RD050688, RD050693, RD050879, RD050882, RD050883, RD050952, RD050988, RD051303, RD051304, RD051518, RD051597, RD051668, RD051850, RD051868, RD051980, RD052184, RD052218, RD052233, RD052234, RD052255, RD052268, RD052580, RD052605, RD052607, RD052610, RD052622, RD052623, RD052722, RD052913, RD053009, RD053605, RD053955, RD054093, RD054392, RD054447, RD054454, RD054456, RD054498, RD054666, RD054701, RD054708, RD054716, RD054743, RD055437, RD055820, RD055842, RD055886, RD056216, RD056458, RD056580, RD056593, RD056727, RD056965, RD057155, RD057180, RD058053, RD058842, RD058843, RD058889, RD058960, RD059037, RD059087, RD059114, RD059124, RD059126, RD060126, RD060749, RD060857, RD060970, RD061262, RD061265, RD061272, RD061308, RD061309, RD061310, RD061311 |
| Exosporium sp. | RD009674, RD053431, RD058993 |
| Exserohilum sp. | RD051834, RD053223, RD054627, RD054628, RD055998, RD058723 |
