English site

微生物 : Corynebacterium efficiens

微生物株情報

NBRC番号 100395
学名 Corynebacterium efficiens
別名（シノニム） 該当データなし
由来 Ajinomoto Co., Inc. (R. Fudou, YS-314)
他保存機関番号 JCM 11189=DSM 44549=CCM 7123=CCUG 48037=CIP 107632=FERM 9246=CCUG 47130
他株番号 YS-314=AJ 12310
参考文献
12148616
Corynebacterium efficiens sp. nov., a glutamic-acid-producing species from soil and vegetables. (Int J Syst Evol Microbiol. 2002)
12840036
Comparative complete genome sequence analysis of the amino acid replacements responsible for the thermostability of Corynebacterium efficiens. (Genome Res. 2003)

推定保有機能 >>詳細

Download
タイプパターン 構成遺伝子 該当CDS
Alanine racemization(NFUNC_0063)
必須A
ALR
(NRULE_0228)
Alanine racemaseCE0593
Anthranilate biosynthesis(NFUNC_0038)
必須A
GLAT
(NRULE_0142)
Glutamine amidotransferaseCE2869 CE1059
TRPE
(NRULE_0143)
Anthranilate synthase component ICE2868
Arsenical resistance(NFUNC_0004)
必須D
ARSB2
(NRULE_0016)
Arsenite resistance protein ArsBCE0875
ARSC1
(NRULE_0017)
Arsenate reductaseCE1150
Bacitracin resistance(NFUNC_0022)
必須A
UPPP
(NRULE_0097)
Undecaprenyl-diphosphataseCE1640
Benzoate degradation (via hydroxylation by dioxygenase)(NFUNC_0017)
必須A
BENA
(NRULE_0046)
Benzoate 1,2-dioxygenase alpha subunitCE2305
BENB
(NRULE_0047)
Benzoate 1,2-dioxygenase beta subunitCE2306
BEND
(NRULE_0082)
1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenaseCE2308
任意 
BENC
(NRULE_0055)
Benzoate 1,2-dioxygenase electron transfer componentCE2307
 
FDR1
(NRULE_0032)
Oxygenase electron transfer componentCE0635 CE0671 CE2307
 
FDX1
(NRULE_0034)
Putative Rieske-type ferredoxinCE2852 CE2887 CE2876 CE0634 CE2083 CE2305
Catechol degradation (beta-ketoadipate pathway)(NFUNC_0013)
必須A
CATA
(NRULE_0052)
Catechol 1,2-dioxygenaseCE2304
CATB2
(NRULE_0053)
(Chloro)muconate cycloisomeraseCE2303
CATC
(NRULE_0054)
Muconolactone isomeraseCE2302
PCAD
(NRULE_0070)
3-oxoadipate enol-lactonaseCE2296
PCAI
(NRULE_0072)
3-oxoadipate CoA-transferase subunit ACE2293
PCAJ
(NRULE_0073)
3-oxoadipate CoA-transferase subunit BCE2292
PCAF
(NRULE_0074)
Beta-ketoadipyl-CoA thiolaseCE2295 CE0673
B
CATA
(NRULE_0052)
Catechol 1,2-dioxygenaseCE2304
CATC
(NRULE_0054)
Muconolactone isomeraseCE2302
PCAD
(NRULE_0070)
3-oxoadipate enol-lactonaseCE2296
PCAI
(NRULE_0072)
3-oxoadipate CoA-transferase subunit ACE2293
PCAJ
(NRULE_0073)
3-oxoadipate CoA-transferase subunit BCE2292
PCAF
(NRULE_0074)
Beta-ketoadipyl-CoA thiolaseCE0673 CE2295
CATB1
(NRULE_0386)
Muconate cycloisomeraseCE2303
Macrolide antibiotic resistance(NFUNC_0045)
必須B
RLMA
(NRULE_0165)
23S rRNA (guanine-N(1))-methyltransferaseCE1172
E
MPH
(NRULE_0169)
Macrolide 2'-phosphotransferaseCE1103
Metal-binding protein(NFUNC_0105)
必須A
MOP
(NRULE_0322)
Putative molybdenum-binding proteinCE0752
C
MODA
(NRULE_0324)
Molybdate ABC transporter substrate-binding proteinCE0189
Molybdate transport (ABC transporter)(NFUNC_0097)
必須A
MODA
(NRULE_0324)
Molybdate ABC transporter substrate-binding proteinCE0189
任意 
MODB
(NRULE_0325)
Molybdate ABC transporter permease proteinCE0188
(R)-pantothenate biosynthesis(NFUNC_0030)
必須A
PAND
(NRULE_0115)
Aspartate 1-decarboxylaseCE0135
PANB
(NRULE_0116)
3-methyl-2-oxobutanoate hydroxymethyltransferaseCE0116
PANE
(NRULE_0117)
2-dehydropantoate 2-reductaseCE1145
PANC
(NRULE_0118)
Pantothenate synthetaseCE0115
Phenol degradation(NFUNC_0028)
必須C
PHEA2
(NRULE_0084)
Aromatic ring hydroxylaseCE2219
任意 
FDR1
(NRULE_0032)
Oxygenase electron transfer componentCE0635 CE0671 CE2307
 
FDX1
(NRULE_0034)
Putative Rieske-type ferredoxinCE2083 CE2887 CE2876 CE2852 CE0634 CE2305
 
FADR1
(NRULE_0101)
NADH-dependent flavin reductaseCE1372
Protocatechuate degradation (beta-ketoadipate pathway)(NFUNC_0014)
必須A
PCAG
(NRULE_0066)
Protocatechuate 3,4-dioxygenase alpha subunitCE2300
PCAH
(NRULE_0067)
Protocatechuate 3,4-dioxygenase beta subunitCE2301
PCAB
(NRULE_0068)
3-carboxy-cis,cis-muconate cycloisomeraseCE2299
PCAC
(NRULE_0069)
4-carboxymuconolactone decarboxylaseCE2298
PCAD
(NRULE_0070)
3-oxoadipate enol-lactonaseCE2296
PCAI
(NRULE_0072)
3-oxoadipate CoA-transferase subunit ACE2293
PCAJ
(NRULE_0073)
3-oxoadipate CoA-transferase subunit BCE2292
PCAF
(NRULE_0074)
Beta-ketoadipyl-CoA thiolaseCE0673 CE2295
Trehalose biosynthesis (from maltooligosaccharide)(NFUNC_0037)
必須A
TREY
(NRULE_0140)
Maltooligosyl trehalose synthaseCE2018
TREZ
(NRULE_0141)
Malto-oligosyltrehalose trehalohydrolaseCE2025
任意 
GLGX
(NRULE_0139)
Glycogen debranching enzymeCE2010
Trehalose biosynthesis (from maltose)(NFUNC_0034)
必須B
TRES
(NRULE_0128)
Trehalose synthaseCE2205
Trehalose biosynthesis (from NDP-glucose and glucose-6-phosphate)(NFUNC_0031)
必須A
TPS
(NRULE_0119)
Trehalose-phosphate synthaseCE2508
TPP
(NRULE_0120)
Trehalose-6-phosphate phosphataseCE2510
Uptake of osmoprotectant(NFUNC_0061)
必須C
BCCT
(NRULE_0220)
BCCT family transporterCE2766 CE0966 CE2217 CE2664
E
OPUE
(NRULE_0222)
Sodium/proline symporterCE1262

ゲノム配列情報

BioProject IDPRJNA305
ローカスタグCE
INSDC entriesBA000035
ステータスComplete
解析状況
コンティグ数3
サイズ(bp) 3,219,505
遺伝子数 2,998
フィニッシングゴール
アセンブル方法
冗長度
シーケンス方法
参考文献
  • Comparative complete genome sequence analysis of the amino acid replacements responsible for the thermostability of Corynebacterium efficiens. (Genome Res. 2003) PMID: 12840036

データダウンロード

ゲノム塩基配列 CDS塩基配列 CDSアミノ酸変換配列 遺伝子/ORF リスト
FASTA
gz		 FASTA
gz		 FASTA
gz		 TSV
uncompressed
963.2 KB 909.7 KB 603.2 KB 218.3 KB