English site

微生物 : Gordonia sputi

微生物株情報

NBRC番号 100414
学名 Gordonia sputi
別名（シノニム） Gordona sputi (sic)
Rhodococcus chubuensis
Rhodococcus obuensis
Rhodococcus sputi
由来 JCM 3228 <- KCC A-0228 <- M. Tsukamura, 3884 (strain Nagura 8539)
他保存機関番号 ATCC 29627=CCM 3354=CCRC 13698=CIP 100849=DSM 43896=JCM 3228=KCTC 3436=PCM 2576=NBRC 16049=BCRC 13698=CCUG 47138
他株番号 Nagura 8539=IMET 7569=KCC A-0228=3884
参考文献
該当データなし

推定保有機能 >>詳細

Download
タイプパターン 構成遺伝子 該当CDS
Alanine racemization(NFUNC_0063)
必須A
ALR
(NRULE_0228)
Alanine racemaseGOSPT_115_01000
n-alkane hydroxylation(NFUNC_0008)
必須B
ALKB
(NRULE_0024)
Alkane 1-monooxygenaseGOSPT_119_00610
C
MMA
(NRULE_0027)
Multicomponent monooxygenase alpha subunitGOSPT_087_00030 GOSPT_087_00010
MMB
(NRULE_0028)
Multicomponent monooxygenase beta subunitGOSPT_087_00030 GOSPT_087_00010
FDR1
(NRULE_0032)
Oxygenase electron transfer componentGOSPT_087_00020 GOSPT_089_00190 GOSPT_096_00110 GOSPT_109_00150 GOSPT_117_00460 GOSPT_141_00310 GOSPT_006_00540 GOSPT_042_00240 GOSPT_051_00380 GOSPT_054_00130 GOSPT_069_00110
MME
(NRULE_0033)
Multicomponent monooxygenase effector proteinGOSPT_087_00050
任意 
RUBA
(NRULE_0039)
RubredoxinGOSPT_119_00610
 
FDX1
(NRULE_0034)
Putative Rieske-type ferredoxinGOSPT_045_00330 GOSPT_045_00100 GOSPT_044_00070 GOSPT_141_00330 GOSPT_152_00300 GOSPT_109_00160 GOSPT_065_00780 GOSPT_058_00080
Anthranilate biosynthesis(NFUNC_0038)
必須A
GLAT
(NRULE_0142)
Glutamine amidotransferaseGOSPT_062_00180
TRPE
(NRULE_0143)
Anthranilate synthase component IGOSPT_124_00210
Arsenical resistance(NFUNC_0004)
必須D
ARSB2
(NRULE_0016)
Arsenite resistance protein ArsBGOSPT_082_00120
ARSC1
(NRULE_0017)
Arsenate reductaseGOSPT_089_00550
Bacitracin resistance(NFUNC_0022)
必須A
UPPP
(NRULE_0097)
Undecaprenyl-diphosphataseGOSPT_051_00930 GOSPT_077_00030 GOSPT_022_01600
Benzoate degradation (via hydroxylation by dioxygenase)(NFUNC_0017)
必須A
BENA
(NRULE_0046)
Benzoate 1,2-dioxygenase alpha subunitGOSPT_141_00330
BENB
(NRULE_0047)
Benzoate 1,2-dioxygenase beta subunitGOSPT_141_00320
BEND
(NRULE_0082)
1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenaseGOSPT_141_00310
任意 
BENC
(NRULE_0055)
Benzoate 1,2-dioxygenase electron transfer componentGOSPT_141_00310
 
FDR1
(NRULE_0032)
Oxygenase electron transfer componentGOSPT_006_00540 GOSPT_042_00240 GOSPT_051_00380 GOSPT_054_00130 GOSPT_069_00110 GOSPT_087_00020 GOSPT_089_00190 GOSPT_096_00110 GOSPT_109_00150 GOSPT_117_00460 GOSPT_141_00310
 
FDX1
(NRULE_0034)
Putative Rieske-type ferredoxinGOSPT_152_00300 GOSPT_044_00070 GOSPT_045_00100 GOSPT_045_00330 GOSPT_058_00080 GOSPT_065_00780 GOSPT_109_00160 GOSPT_141_00330
 
FDR2
(NRULE_0057)
Ferredoxin reductaseGOSPT_096_00080 GOSPT_025_00720
Betaine biosynthesis (from choline)(NFUNC_0049)
必須C
CHOX
(NRULE_0178)
Choline oxidaseGOSPT_109_00030
Ectoine biosynthesis(NFUNC_0056)
必須A
ECTB
(NRULE_0186)
Diaminobutyrate--2-oxoglutarate transaminaseGOSPT_051_00830
ECTA
(NRULE_0187)
L-2,4-diaminobutyric acid acetyltransferaseGOSPT_051_00820
ECTC
(NRULE_0188)
L-ectoine synthaseGOSPT_051_00840
GABA biosynthesis(NFUNC_0066)
必須A
GAD
(NRULE_0231)
Glutamate decarboxylaseGOSPT_091_00050
Hydroxyectoine biosynthesis(NFUNC_0057)
必須A
ECTD
(NRULE_0189)
Ectoine hydroxylaseGOSPT_004_00560
任意 
ECTB
(NRULE_0186)
Diaminobutyrate--2-oxoglutarate transaminaseGOSPT_051_00830
 
ECTA
(NRULE_0187)
L-2,4-diaminobutyric acid acetyltransferaseGOSPT_051_00820
 
ECTC
(NRULE_0188)
L-ectoine synthaseGOSPT_051_00840
Mercury resistance(NFUNC_0005)
必須A
MERA
(NRULE_0008)
Mercuric reductaseGOSPT_024_00050
Metal-binding protein(NFUNC_0105)
必須A
MOP
(NRULE_0322)
Putative molybdenum-binding proteinGOSPT_009_00160 GOSPT_052_00070 GOSPT_086_00140 GOSPT_007_00060
C
MODA
(NRULE_0324)
Molybdate ABC transporter substrate-binding proteinGOSPT_052_00100 GOSPT_086_00150
F
SOXR
(NRULE_0329)
Redox-sensitive transcriptional activator SoxRGOSPT_089_00010
Molybdate transport (ABC transporter)(NFUNC_0097)
必須A
MODA
(NRULE_0324)
Molybdate ABC transporter substrate-binding proteinGOSPT_086_00150 GOSPT_052_00100
任意 
MODB
(NRULE_0325)
Molybdate ABC transporter permease proteinGOSPT_086_00160
(R)-pantothenate biosynthesis(NFUNC_0030)
必須A
PAND
(NRULE_0115)
Aspartate 1-decarboxylaseGOSPT_103_00510
PANB
(NRULE_0116)
3-methyl-2-oxobutanoate hydroxymethyltransferaseGOSPT_072_00340
PANE
(NRULE_0117)
2-dehydropantoate 2-reductaseGOSPT_088_00210
PANC
(NRULE_0118)
Pantothenate synthetaseGOSPT_103_00530
Phenol degradation(NFUNC_0028)
必須C
PHEA2
(NRULE_0084)
Aromatic ring hydroxylaseGOSPT_003_00210
任意 
FDR2
(NRULE_0057)
Ferredoxin reductaseGOSPT_025_00720 GOSPT_096_00080
 
FDR1
(NRULE_0032)
Oxygenase electron transfer componentGOSPT_054_00130 GOSPT_051_00380 GOSPT_087_00020 GOSPT_089_00190 GOSPT_096_00110 GOSPT_006_00540 GOSPT_042_00240 GOSPT_117_00460 GOSPT_141_00310 GOSPT_109_00150 GOSPT_069_00110
 
MME
(NRULE_0033)
Multicomponent monooxygenase effector proteinGOSPT_087_00050
 
FDX1
(NRULE_0034)
Putative Rieske-type ferredoxinGOSPT_065_00780 GOSPT_152_00300 GOSPT_141_00330 GOSPT_109_00160 GOSPT_058_00080 GOSPT_045_00330 GOSPT_045_00100 GOSPT_044_00070
 
FADR1
(NRULE_0101)
NADH-dependent flavin reductaseGOSPT_004_00390 GOSPT_028_00050 GOSPT_045_00360 GOSPT_085_00850
Trehalose biosynthesis (from maltooligosaccharide)(NFUNC_0037)
必須A
TREY
(NRULE_0140)
Maltooligosyl trehalose synthaseGOSPT_058_00840
TREZ
(NRULE_0141)
Malto-oligosyltrehalose trehalohydrolaseGOSPT_058_00740
任意 
GLGX
(NRULE_0139)
Glycogen debranching enzymeGOSPT_058_00850 GOSPT_072_00120
Trehalose biosynthesis (from NDP-glucose and glucose-6-phosphate)(NFUNC_0031)
必須A
TPS
(NRULE_0119)
Trehalose-phosphate synthaseGOSPT_142_00060
TPP
(NRULE_0120)
Trehalose-6-phosphate phosphataseGOSPT_142_00070
Uptake of osmoprotectant(NFUNC_0061)
必須C
BCCT
(NRULE_0220)
BCCT family transporterGOSPT_109_00070
Vitamin B6 biosynthesis (PdxS/PdxT pathway)(NFUNC_0059)
必須A
PDXS
(NRULE_0206)
Pyridoxal biosynthesis lyase PdxSGOSPT_064_00070
PDXT
(NRULE_0207)
Glutamine amidotransferase subunit PdxTGOSPT_064_00020

ゲノム配列情報

BioProject IDPRJDA73363
ローカスタグGOSPT
INSDC entriesBAFC00000000
ステータスWGS
解析状況High-Quality Draft
コンティグ数158
サイズ(bp) 4,952,979
遺伝子数 4,592
フィニッシングゴールNoncontiguous Finished
アセンブル方法Newbler v. 2.3
冗長度
シーケンス方法
  • Roche 454
参考文献

データダウンロード

ゲノム塩基配列 CDS塩基配列 CDSアミノ酸変換配列 遺伝子/ORF リスト
FASTA
gz		 FASTA
gz		 FASTA
gz		 TSV
uncompressed
1.4 MB 1.4 MB 932.6 KB 353.7 KB