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微生物 : Acinetobacter sp.

微生物株情報

NBRC番号 100985
学名 Acinetobacter sp.
別名（シノニム） 該当データなし
由来 NITE <- MBIC01332 <- Marine Biotechnol. Inst. (H. Toki, T4)
他保存機関番号 MBIC 01332=FERM P-13368
他株番号 NITE 00141=T4
参考文献
10028249
Phylogenetic structures of the genus Acinetobacter based on gyrB sequences: comparison with the grouping by DNA-DNA hybridization. (Int J Syst Bacteriol. 1999)

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タイプパターン 構成遺伝子 該当CDS
Alanine racemization(NFUNC_0063)
必須A
ALR
(NRULE_0228)
Alanine racemaseACT4_002_00150 ACT4_001_00810
n-alkane hydroxylation(NFUNC_0008)
必須A
CYP153
(NRULE_0041)
Cytochrome P450 CYP153ACT4_067_00170
B
ALKB
(NRULE_0024)
Alkane 1-monooxygenaseACT4_036_00140 ACT4_038_01670
任意 
RUBA
(NRULE_0039)
RubredoxinACT4_013_00280
 
RUBB
(NRULE_0040)
Rubredoxin reductaseACT4_013_00270
 
FDX1
(NRULE_0034)
Putative Rieske-type ferredoxinACT4_036_00780 ACT4_052_00360 ACT4_052_00380 ACT4_047_00070 ACT4_040_00190 ACT4_038_00460
Anthranilate biosynthesis(NFUNC_0038)
必須A
GLAT
(NRULE_0142)
Glutamine amidotransferaseACT4_034_00145
TRPE
(NRULE_0143)
Anthranilate synthase component IACT4_014_01020
Aromatic azo compounds degradation(NFUNC_0073)
必須A
AZOR
(NRULE_0236)
FMN-dependent NADH-azoreductaseACT4_013_00690
Arsenical resistance(NFUNC_0004)
必須D
ARSB2
(NRULE_0016)
Arsenite resistance protein ArsBACT4_006_00510
ARSC1
(NRULE_0017)
Arsenate reductaseACT4_006_00480
E
ARSB2
(NRULE_0016)
Arsenite resistance protein ArsBACT4_006_00510
ARSC2
(NRULE_0018)
Arsenate reductaseACT4_006_00500
任意 
ARSH
(NRULE_0021)
ArsH proteinACT4_006_00520
Bacitracin resistance(NFUNC_0022)
必須A
UPPP
(NRULE_0097)
Undecaprenyl-diphosphataseACT4_021_00220 ACT4_015_00080
Benzoate degradation (via hydroxylation by dioxygenase)(NFUNC_0017)
必須A
BENA
(NRULE_0046)
Benzoate 1,2-dioxygenase alpha subunitACT4_038_00460
BENB
(NRULE_0047)
Benzoate 1,2-dioxygenase beta subunitACT4_038_00450
BEND
(NRULE_0082)
1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenaseACT4_038_00430
任意 
BENC
(NRULE_0055)
Benzoate 1,2-dioxygenase electron transfer componentACT4_038_00440
 
FDR1
(NRULE_0032)
Oxygenase electron transfer componentACT4_038_00440 ACT4_021_03500
 
FDX1
(NRULE_0034)
Putative Rieske-type ferredoxinACT4_038_00460 ACT4_040_00190 ACT4_047_00070 ACT4_052_00380 ACT4_052_00360 ACT4_036_00780
 
FDR2
(NRULE_0057)
Ferredoxin reductaseACT4_067_00160
Beta-lactam antibiotic resistance(NFUNC_0033)
必須C
BLAC
(NRULE_0124)
Beta-lactamase class CACT4_020_00170
Betaine biosynthesis (from choline)(NFUNC_0049)
必須A
BETA
(NRULE_0175)
Choline dehydrogenaseACT4_021_00420
Catechol degradation (beta-ketoadipate pathway)(NFUNC_0013)
必須A
CATA
(NRULE_0052)
Catechol 1,2-dioxygenaseACT4_038_00470
CATB2
(NRULE_0053)
(Chloro)muconate cycloisomeraseACT4_038_00490
CATC
(NRULE_0054)
Muconolactone isomeraseACT4_038_00480
PCAD
(NRULE_0070)
3-oxoadipate enol-lactonaseACT4_038_00380 ACT4_036_01070
PCAI
(NRULE_0072)
3-oxoadipate CoA-transferase subunit AACT4_038_00410 ACT4_064_00090 ACT4_036_01110
PCAJ
(NRULE_0073)
3-oxoadipate CoA-transferase subunit BACT4_038_00400 ACT4_036_01100 ACT4_064_00080
PCAF
(NRULE_0074)
Beta-ketoadipyl-CoA thiolaseACT4_038_00390 ACT4_036_01090
B
CATA
(NRULE_0052)
Catechol 1,2-dioxygenaseACT4_038_00470
CATC
(NRULE_0054)
Muconolactone isomeraseACT4_038_00480
PCAD
(NRULE_0070)
3-oxoadipate enol-lactonaseACT4_038_00380 ACT4_036_01070
PCAI
(NRULE_0072)
3-oxoadipate CoA-transferase subunit AACT4_064_00090 ACT4_036_01110 ACT4_038_00410
PCAJ
(NRULE_0073)
3-oxoadipate CoA-transferase subunit BACT4_036_01100 ACT4_038_00400 ACT4_064_00080
PCAF
(NRULE_0074)
Beta-ketoadipyl-CoA thiolaseACT4_036_01090 ACT4_038_00390
CATB1
(NRULE_0386)
Muconate cycloisomeraseACT4_038_00490
Cephalosporin resistance(NFUNC_0048)
必須A
BLAC
(NRULE_0124)
Beta-lactamase class CACT4_020_00170
Ectoine biosynthesis(NFUNC_0056)
必須A
ECTB
(NRULE_0186)
Diaminobutyrate--2-oxoglutarate transaminaseACT4_006_00920
ECTA
(NRULE_0187)
L-2,4-diaminobutyric acid acetyltransferaseACT4_006_00910
ECTC
(NRULE_0188)
L-ectoine synthaseACT4_006_00930
Hydroxyectoine biosynthesis(NFUNC_0057)
必須A
ECTD
(NRULE_0189)
Ectoine hydroxylaseACT4_006_00940
任意 
ECTB
(NRULE_0186)
Diaminobutyrate--2-oxoglutarate transaminaseACT4_006_00920
 
ECTA
(NRULE_0187)
L-2,4-diaminobutyric acid acetyltransferaseACT4_006_00910
 
ECTC
(NRULE_0188)
L-ectoine synthaseACT4_006_00930
Macrolide antibiotic resistance(NFUNC_0045)
必須B
RLMA
(NRULE_0165)
23S rRNA (guanine-N(1))-methyltransferaseACT4_019_01490
Metal-binding protein(NFUNC_0105)
必須C
MODA
(NRULE_0324)
Molybdate ABC transporter substrate-binding proteinACT4_023_01050 ACT4_007_00290
E
CUER
(NRULE_0328)
Copper-responsive transcriptional regulator CueRACT4_010_00160
F
SOXR
(NRULE_0329)
Redox-sensitive transcriptional activator SoxRACT4_006_00970
Molybdate transport (ABC transporter)(NFUNC_0097)
必須A
MODA
(NRULE_0324)
Molybdate ABC transporter substrate-binding proteinACT4_007_00290 ACT4_023_01050
任意 
MODB
(NRULE_0325)
Molybdate ABC transporter permease proteinACT4_023_01040
 
MODC
(NRULE_0326)
Molybdate ABC transporter ATP-binding proteinACT4_023_01030
Protocatechuate degradation (beta-ketoadipate pathway)(NFUNC_0014)
必須A
PCAG
(NRULE_0066)
Protocatechuate 3,4-dioxygenase alpha subunitACT4_036_01030
PCAH
(NRULE_0067)
Protocatechuate 3,4-dioxygenase beta subunitACT4_036_01040
PCAB
(NRULE_0068)
3-carboxy-cis,cis-muconate cycloisomeraseACT4_036_01080
PCAC
(NRULE_0069)
4-carboxymuconolactone decarboxylaseACT4_036_01050
PCAD
(NRULE_0070)
3-oxoadipate enol-lactonaseACT4_036_01070 ACT4_038_00380
PCAI
(NRULE_0072)
3-oxoadipate CoA-transferase subunit AACT4_036_01110 ACT4_038_00410 ACT4_064_00090
PCAJ
(NRULE_0073)
3-oxoadipate CoA-transferase subunit BACT4_038_00400 ACT4_036_01100 ACT4_064_00080
PCAF
(NRULE_0074)
Beta-ketoadipyl-CoA thiolaseACT4_038_00390 ACT4_036_01090
Riboflavin biosynthesis(NFUNC_0058)
必須A
RIBB
(NRULE_0200)
3,4-dihydroxy-2-butanone 4-phosphate synthaseACT4_021_01950 ACT4_020_00340
RIBA
(NRULE_0201)
GTP cyclohydrolase-2ACT4_020_00340 ACT4_019_00570
RIBD
(NRULE_0202)
Riboflavin biosynthesis protein RibDACT4_010_00390
RIBH
(NRULE_0203)
6,7-dimethyl-8-ribityllumazine synthaseACT4_020_00330
RIBE
(NRULE_0204)
Riboflavin synthaseACT4_010_00420
任意 
RIBF
(NRULE_0205)
Riboflavin biosynthesis protein RibFACT4_001_00070
Uptake of osmoprotectant(NFUNC_0061)
必須C
BCCT
(NRULE_0220)
BCCT family transporterACT4_001_01480 ACT4_021_02980 ACT4_021_00450
E
OPUE
(NRULE_0222)
Sodium/proline symporterACT4_028_00950

ゲノム配列情報

BioProject IDPRJNA71037
ローカスタグACT4
INSDC entriesBAEB00000000
ステータスWGS
解析状況High-Quality Draft
コンティグ数67
サイズ(bp) 3,518,097
遺伝子数 3,352
フィニッシングゴールNoncontiguous Finished
アセンブル方法Newbler v. 2.3
冗長度
シーケンス方法
  • Roche 454
参考文献

データダウンロード

ゲノム塩基配列 CDS塩基配列 CDSアミノ酸変換配列 遺伝子/ORF リスト
FASTA
gz		 FASTA
gz		 FASTA
gz		 TSV
uncompressed
1.1 MB 1005.5 KB 667.4 KB 258.1 KB