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Microbe : Serratia odorifera

Microbe Description

NBRC No. 102598
Scientific name Serratia odorifera
Synonymous name Not assigned
History JCM 1243 <- Y. Kosako, 331 <- R. Sakazaki, 331 <- P.A.D. Grimont, 1073
Other culture collection No. ATCC 33077=BCRC 12223=CCM 3388=CCUG 14508=CECT 867=CIP 79.1=DSM 4582=IAM 13542=JCM 1243=NCTC 11214
Other No. CDC 1979-77=ICPB 3995=331=1073
Reference
Not assigned

Functional Potential >>Details

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TypePattern Component Gene CDS
Alanine racemization(NFUNC_0063)
RequireA
ALR
(NRULE_0228)
Alanine racemaseHMPREF0758_1776
Aminoglycoside resistance (by aminoglycoside O-phosphotransferase)(NFUNC_0043)
RequireA
APH6
(NRULE_0155)
Streptomycin 6-kinaseHMPREF0758_3888
Anthranilate biosynthesis(NFUNC_0038)
RequireA
GLAT
(NRULE_0142)
Glutamine amidotransferaseHMPREF0758_3546 HMPREF0758_1000
TRPE
(NRULE_0143)
Anthranilate synthase component IHMPREF0758_3547
Aromatic azo compounds degradation(NFUNC_0073)
RequireA
AZOR
(NRULE_0236)
FMN-dependent NADH-azoreductaseHMPREF0758_3629
Arsenical resistance(NFUNC_0004)
RequireA
ARSB1
(NRULE_0015)
Arsenical pump membrane proteinHMPREF0758_3144
ARSC1
(NRULE_0017)
Arsenate reductaseHMPREF0758_2596 HMPREF0758_3145
Bacitracin resistance(NFUNC_0022)
RequireA
UPPP
(NRULE_0097)
Undecaprenyl-diphosphataseHMPREF0758_1936
Beta-lactam antibiotic resistance(NFUNC_0033)
RequireC
BLAC
(NRULE_0124)
Beta-lactamase class CHMPREF0758_3355
Betaine biosynthesis (from choline)(NFUNC_0049)
RequireA
BETA
(NRULE_0175)
Choline dehydrogenaseHMPREF0758_4630
Biotin biosynthesis(NFUNC_0051)
RequireA
BIOF
(NRULE_0182)
8-amino-7-oxononanoate synthaseHMPREF0758_4797
BIOA
(NRULE_0183)
Adenosylmethionine-8-amino-7-oxononanoate aminotransferaseHMPREF0758_4799
BIOD
(NRULE_0184)
ATP-dependent dethiobiotin synthetase BioDHMPREF0758_4795 HMPREF0758_3827
BIOB
(NRULE_0185)
Biotin synthaseHMPREF0758_4798
Cephalosporin resistance(NFUNC_0048)
RequireA
BLAC
(NRULE_0124)
Beta-lactamase class CHMPREF0758_3355
Folate biosynthesis(NFUNC_0044)
RequireA
GLAT
(NRULE_0142)
Glutamine amidotransferaseHMPREF0758_3546 HMPREF0758_1000
DHPS
(NRULE_0144)
Dihydropteroate synthaseHMPREF0758_0809
FOLM
(NRULE_0146)
Dihydrofolate reductase FolMHMPREF0758_3637
FOLB
(NRULE_0158)
Dihydroneopterin aldolaseHMPREF0758_1935 HMPREF0758_2769
FOLK
(NRULE_0159)
2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinaseHMPREF0758_2161
FOLC
(NRULE_0160)
Bifunctional protein FolCHMPREF0758_2759
PABB
(NRULE_0161)
Para-aminobenzoate synthase component IHMPREF0758_3332
PABC
(NRULE_0162)
Aminodeoxychorismate lyaseHMPREF0758_4184
B
GLAT
(NRULE_0142)
Glutamine amidotransferaseHMPREF0758_1000 HMPREF0758_3546
DHPS
(NRULE_0144)
Dihydropteroate synthaseHMPREF0758_0809
FOLA
(NRULE_0147)
Dihydrofolate reductaseHMPREF0758_0557
FOLB
(NRULE_0158)
Dihydroneopterin aldolaseHMPREF0758_2769 HMPREF0758_1935
FOLK
(NRULE_0159)
2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinaseHMPREF0758_2161
FOLC
(NRULE_0160)
Bifunctional protein FolCHMPREF0758_2759
PABB
(NRULE_0161)
Para-aminobenzoate synthase component IHMPREF0758_3332
PABC
(NRULE_0162)
Aminodeoxychorismate lyaseHMPREF0758_4184
Fosfomycin resistance(NFUNC_0023)
RequireA
FOSA
(NRULE_0098)
Glutathione transferase FosAHMPREF0758_3311
Macrolide antibiotic resistance(NFUNC_0045)
RequireB
RLMA
(NRULE_0165)
23S rRNA (guanine-N(1))-methyltransferaseHMPREF0758_3320
C
MACA
(NRULE_0166)
Macrolide-specific efflux protein MacAHMPREF0758_4461
MACB
(NRULE_0167)
Macrolide export ATP-binding/permease protein MacBHMPREF0758_4460
Metal-binding protein(NFUNC_0105)
RequireA
MOP
(NRULE_0322)
Putative molybdenum-binding proteinHMPREF0758_4806 HMPREF0758_4811
B
MODE
(NRULE_0323)
Putative molybdate-dependent transcriptional regulatorHMPREF0758_4811
C
MODA
(NRULE_0324)
Molybdate ABC transporter substrate-binding proteinHMPREF0758_2649 HMPREF0758_0710 HMPREF0758_0984 HMPREF0758_4808
E
CUER
(NRULE_0328)
Copper-responsive transcriptional regulator CueRHMPREF0758_0140
G
ZNTR
(NRULE_0330)
Zinc-responsive transcriptional regulator ZntRHMPREF0758_0934
Molybdate transport (ABC transporter)(NFUNC_0097)
RequireA
MODA
(NRULE_0324)
Molybdate ABC transporter substrate-binding proteinHMPREF0758_0984 HMPREF0758_2649 HMPREF0758_0710 HMPREF0758_4808
Participant 
MODE
(NRULE_0323)
Putative molybdate-dependent transcriptional regulatorHMPREF0758_4811
 
MODB
(NRULE_0325)
Molybdate ABC transporter permease proteinHMPREF0758_4807
 
MODC
(NRULE_0326)
Molybdate ABC transporter ATP-binding proteinHMPREF0758_4806
(R)-pantothenate biosynthesis(NFUNC_0030)
RequireA
PAND
(NRULE_0115)
Aspartate 1-decarboxylaseHMPREF0758_2156
PANB
(NRULE_0116)
3-methyl-2-oxobutanoate hydroxymethyltransferaseHMPREF0758_2158
PANE
(NRULE_0117)
2-dehydropantoate 2-reductaseHMPREF0758_0213 HMPREF0758_3058
PANC
(NRULE_0118)
Pantothenate synthetaseHMPREF0758_2157
Phenol degradation(NFUNC_0028)
RequireB
PHEA1
(NRULE_0083)
Aromatic ring hydroxylaseHMPREF0758_0649
Participant 
FDR1
(NRULE_0032)
Oxygenase electron transfer componentHMPREF0758_4466 HMPREF0758_0326 HMPREF0758_3095
 
FDX1
(NRULE_0034)
Putative Rieske-type ferredoxinHMPREF0758_2180 HMPREF0758_2182
 
FADR1
(NRULE_0101)
NADH-dependent flavin reductaseHMPREF0758_3756 HMPREF0758_0648 HMPREF0758_3034 HMPREF0758_4664
Pyrroloquinoline quinone biosynthesis(NFUNC_0020)
RequireA
PQQC
(NRULE_0092)
Pyrroloquinoline-quinone synthaseHMPREF0758_3730
Participant 
PQQB
(NRULE_0091)
Coenzyme PQQ synthesis protein BHMPREF0758_3731
 
PQQD
(NRULE_0093)
Coenzyme PQQ synthesis protein DHMPREF0758_3729
 
PQQE
(NRULE_0094)
Coenzyme PQQ synthesis protein EHMPREF0758_3728
Riboflavin biosynthesis(NFUNC_0058)
RequireA
RIBB
(NRULE_0200)
3,4-dihydroxy-2-butanone 4-phosphate synthaseHMPREF0758_1946
RIBA
(NRULE_0201)
GTP cyclohydrolase-2HMPREF0758_3564
RIBD
(NRULE_0202)
Riboflavin biosynthesis protein RibDHMPREF0758_0227
RIBH
(NRULE_0203)
6,7-dimethyl-8-ribityllumazine synthaseHMPREF0758_0226
RIBE
(NRULE_0204)
Riboflavin synthaseHMPREF0758_3930
Participant 
RIBF
(NRULE_0205)
Riboflavin biosynthesis protein RibFHMPREF0758_0575
Streptomycin resistance(NFUNC_0054)
RequireC
APH6
(NRULE_0155)
Streptomycin 6-kinaseHMPREF0758_3888
Uptake of osmoprotectant(NFUNC_0061)
RequireA
OPUAC
(NRULE_0213)
Osmoprotectant ABC transporter substrate-binding proteinHMPREF0758_2387 HMPREF0758_2386
OPUAB
(NRULE_0214)
Osmoprotectant ABC transporter permease proteinHMPREF0758_2388
OPUAA
(NRULE_0215)
Osmoprotectant ABC transporter ATP-binding proteinHMPREF0758_0467 HMPREF0758_2389
C
BCCT
(NRULE_0220)
BCCT family transporterHMPREF0758_4634 HMPREF0758_4285
D
PROP
(NRULE_0221)
Osmoprotectant transporterHMPREF0758_4232
E
OPUE
(NRULE_0222)
Sodium/proline symporterHMPREF0758_3241
Vitamin B6 biosynthesis (PdxA/PdxJ pathway)(NFUNC_0060)
RequireA
EPD
(NRULE_0208)
D-erythrose-4-phosphate dehydrogenaseHMPREF0758_2198
PDXB
(NRULE_0209)
Erythronate-4-phosphate dehydrogenaseHMPREF0758_2754
SERC
(NRULE_0210)
Phosphoserine aminotransferaseHMPREF0758_4386
PDXA
(NRULE_0211)
4-hydroxythreonine-4-phosphate dehydrogenaseHMPREF0758_0552 HMPREF0758_2145
PDXJ
(NRULE_0212)
Pyridoxine 5'-phosphate synthaseHMPREF0758_2458

Genomic Overview

BioProject IDPRJNA40087
Locus_tagHMPREF0758
INSDC entriesADBY00000000
Sequence statusWGS
Current status
Contig number91
Size(bp) 5,125,678
Gene 5,121
Finishing goal
Assembly method
Coverage11x
Technology
  • 454
  • ABI
Reference

Data Download

Genomic nucleotide sequence Nucleotide sequence of the coding regions Translation of the coding sequneces List of genes / ORFs
FASTA
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FASTA
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FASTA
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TSV
uncompressed
1.5 MB 1.4 MB 968.8 KB 444.2 KB