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Microbe : Geodermatophilus obscurus

Microbe Description

NBRC No. 13315
Scientific name Geodermatophilus obscurus
Synonymous name Not assigned
History IFO 13315 <- KCC A-0152 <- Schering Corp. (G.M. Luedemann, G-20)
Other culture collection No. ATCC 25078=DSM 43160=JCM 3152=NRRL B-3577=VKM Ac-658
Other No.
Reference
21304698
Complete genome sequence of Geodermatophilus obscurus type strain (G-20). (Stand Genomic Sci. 2010)

Functional Potential >>Details

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TypePattern Component Gene CDS
Alanine racemization(NFUNC_0063)
RequireA
ALR
(NRULE_0228)
Alanine racemaseGobs_4462
Anthranilate biosynthesis(NFUNC_0038)
RequireA
GLAT
(NRULE_0142)
Glutamine amidotransferaseGobs_0034
TRPE
(NRULE_0143)
Anthranilate synthase component IGobs_3220
Aromatic azo compounds degradation(NFUNC_0073)
RequireA
AZOR
(NRULE_0236)
FMN-dependent NADH-azoreductaseGobs_1788
Bacitracin resistance(NFUNC_0022)
RequireA
UPPP
(NRULE_0097)
Undecaprenyl-diphosphataseGobs_2660
Benzoate degradation (via hydroxylation by dioxygenase)(NFUNC_0017)
RequireA
BENA
(NRULE_0046)
Benzoate 1,2-dioxygenase alpha subunitGobs_1297
BENB
(NRULE_0047)
Benzoate 1,2-dioxygenase beta subunitGobs_1298
BEND
(NRULE_0082)
1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenaseGobs_1299
Participant 
BENC
(NRULE_0055)
Benzoate 1,2-dioxygenase electron transfer componentGobs_1299
 
FDR1
(NRULE_0032)
Oxygenase electron transfer componentGobs_2761 Gobs_2825 Gobs_2855 Gobs_1903 Gobs_2899 Gobs_5060 Gobs_1299
 
FDX1
(NRULE_0034)
Putative Rieske-type ferredoxinGobs_2893 Gobs_2913 Gobs_3342 Gobs_4736 Gobs_3052 Gobs_0217 Gobs_0485 Gobs_1297 Gobs_2066 Gobs_2826 Gobs_2853
Betaine biosynthesis (from choline)(NFUNC_0049)
RequireA
BETA
(NRULE_0175)
Choline dehydrogenaseGobs_1710
Bioplastic degradation(NFUNC_0015)
RequireA
PHAZ1
(NRULE_0023)
Intracellular poly(3-hydroxyalkanoate) depolymeraseGobs_3745
B
PHAZ2
(NRULE_0080)
Poly(3-hydroxyalkanoate) depolymeraseGobs_1173
Macrolide antibiotic resistance(NFUNC_0045)
RequireB
RLMA
(NRULE_0165)
23S rRNA (guanine-N(1))-methyltransferaseGobs_1348
D
ERE
(NRULE_0168)
Erythromycin esteraseGobs_3856
Metal-binding protein(NFUNC_0105)
RequireA
MOP
(NRULE_0322)
Putative molybdenum-binding proteinGobs_4972 Gobs_4968 Gobs_2792
C
MODA
(NRULE_0324)
Molybdate ABC transporter substrate-binding proteinGobs_4970
F
SOXR
(NRULE_0329)
Redox-sensitive transcriptional activator SoxRGobs_0531
Molybdate transport (ABC transporter)(NFUNC_0097)
RequireA
MODA
(NRULE_0324)
Molybdate ABC transporter substrate-binding proteinGobs_4970
Participant 
MODB
(NRULE_0325)
Molybdate ABC transporter permease proteinGobs_4969
(R)-pantothenate biosynthesis(NFUNC_0030)
RequireA
PAND
(NRULE_0115)
Aspartate 1-decarboxylaseGobs_0633
PANB
(NRULE_0116)
3-methyl-2-oxobutanoate hydroxymethyltransferaseGobs_3402
PANE
(NRULE_0117)
2-dehydropantoate 2-reductaseGobs_3881
PANC
(NRULE_0118)
Pantothenate synthetaseGobs_0632
Protocatechuate degradation (beta-ketoadipate pathway)(NFUNC_0014)
RequireA
PCAG
(NRULE_0066)
Protocatechuate 3,4-dioxygenase alpha subunitGobs_2187
PCAH
(NRULE_0067)
Protocatechuate 3,4-dioxygenase beta subunitGobs_2186
PCAB
(NRULE_0068)
3-carboxy-cis,cis-muconate cycloisomeraseGobs_2188
PCAC
(NRULE_0069)
4-carboxymuconolactone decarboxylaseGobs_2190
PCAD
(NRULE_0070)
3-oxoadipate enol-lactonaseGobs_2189
PCAI
(NRULE_0072)
3-oxoadipate CoA-transferase subunit AGobs_4337 Gobs_3086
PCAJ
(NRULE_0073)
3-oxoadipate CoA-transferase subunit BGobs_3085 Gobs_4338
PCAF
(NRULE_0074)
Beta-ketoadipyl-CoA thiolaseGobs_3827
Pyrroloquinoline quinone biosynthesis(NFUNC_0020)
RequireA
PQQC
(NRULE_0092)
Pyrroloquinoline-quinone synthaseGobs_2454
Participant 
PQQB
(NRULE_0091)
Coenzyme PQQ synthesis protein BGobs_2453
 
PQQE
(NRULE_0094)
Coenzyme PQQ synthesis protein EGobs_2456
Trehalose biosynthesis (from maltooligosaccharide)(NFUNC_0037)
RequireA
TREY
(NRULE_0140)
Maltooligosyl trehalose synthaseGobs_1957
TREZ
(NRULE_0141)
Malto-oligosyltrehalose trehalohydrolaseGobs_1952
Participant 
GLGX
(NRULE_0139)
Glycogen debranching enzymeGobs_1958 Gobs_4097
Trehalose biosynthesis (from maltose)(NFUNC_0034)
RequireB
TRES
(NRULE_0128)
Trehalose synthaseGobs_4101
Trehalose biosynthesis (from NDP-glucose and glucose-6-phosphate)(NFUNC_0031)
RequireA
TPS
(NRULE_0119)
Trehalose-phosphate synthaseGobs_5012
TPP
(NRULE_0120)
Trehalose-6-phosphate phosphataseGobs_5011
Uptake of osmoprotectant(NFUNC_0061)
RequireC
BCCT
(NRULE_0220)
BCCT family transporterGobs_4898 Gobs_2851 Gobs_2906 Gobs_2914 Gobs_1709
Vitamin B6 biosynthesis (PdxS/PdxT pathway)(NFUNC_0059)
RequireA
PDXS
(NRULE_0206)
Pyridoxal biosynthesis lyase PdxSGobs_3182
PDXT
(NRULE_0207)
Glutamine amidotransferase subunit PdxTGobs_3180

Genomic Overview

BioProject IDPRJNA29547
Locus_tagGOBS
INSDC entriesCP001867
Sequence statusComplete
Current status
Contig number1
Size(bp) 5,322,497
Gene 4,811
Finishing goal
Assembly method
Coverage
Technology
Reference
  • Complete genome sequence of Geodermatophilus obscurus type strain (G-20). (Stand Genomic Sci. 2010) PMID: 21304698

Data Download

Genomic nucleotide sequence Nucleotide sequence of the coding regions Translation of the coding sequneces List of genes / ORFs
FASTA
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FASTA
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FASTA
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TSV
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1.5 MB 1.3 MB 932.7 KB 376.1 KB