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微生物 : Streptomyces sviceus

微生物株情報

NBRC番号 13980
学名 Streptomyces sviceus
別名(シノニム) 該当データなし
由来 IFO 13980 <- NRRL 5439 <- The Upjohn Co. (UC 5370)
他保存機関番号 NRRL 5439
他株番号
参考文献
4790601
U-42, 126, a new antimetabolite antibiotic: production, biological activity, and taxonomy of the producing microorganism. (Antimicrob Agents Chemother. 1973)

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タイプパターン 構成遺伝子 該当CDS
Alanine racemization(NFUNC_0063)
必須A
ALR
(NRULE_0228)
Alanine racemaseSSEG_11044
D-allose biosynthesis(NFUNC_0077)
必須A
LRHI
(NRULE_0242)
L-rhamnose isomeraseSSEG_04705
Aminoglycoside resistance (by aminoglycoside N-acetyltransferase)(NFUNC_0041)
必須A
AAC3
(NRULE_0149)
Aminoglycoside N(3')-acetyltransferaseSSEG_08760
Aminoglycoside resistance (by aminoglycoside O-phosphotransferase)(NFUNC_0043)
必須A
APH6
(NRULE_0155)
Streptomycin 6-kinaseSSEG_08349 SSEG_03921 SSEG_06914
Ampicillin resistance(NFUNC_0046)
必須A
BLAA
(NRULE_0122)
Beta-lactamase class ASSEG_04136
Anthranilate biosynthesis(NFUNC_0038)
必須A
GLAT
(NRULE_0142)
Glutamine amidotransferaseSSEG_09021 SSEG_09050
TRPE
(NRULE_0143)
Anthranilate synthase component ISSEG_06640
Bacitracin resistance(NFUNC_0022)
必須A
UPPP
(NRULE_0097)
Undecaprenyl-diphosphataseSSEG_06085 SSEG_05420
Beta-lactam antibiotic resistance(NFUNC_0033)
必須A
BLAA
(NRULE_0122)
Beta-lactamase class ASSEG_04136
Betaine biosynthesis (from choline)(NFUNC_0049)
必須A
BETA
(NRULE_0175)
Choline dehydrogenaseSSEG_05612
Bioplastic degradation(NFUNC_0015)
必須B
PHAZ2
(NRULE_0080)
Poly(3-hydroxyalkanoate) depolymeraseSSEG_07012
Ectoine biosynthesis(NFUNC_0056)
必須A
ECTB
(NRULE_0186)
Diaminobutyrate--2-oxoglutarate transaminaseSSEG_08021
ECTA
(NRULE_0187)
L-2,4-diaminobutyric acid acetyltransferaseSSEG_08020
ECTC
(NRULE_0188)
L-ectoine synthaseSSEG_08022
Freeze resistance (by antifreeze protein)(NFUNC_0019)
必須A
AFP
(NRULE_0089)
Ice-structuring proteinSSEG_04317
GABA biosynthesis(NFUNC_0066)
必須A
GAD
(NRULE_0231)
Glutamate decarboxylaseSSEG_04411
Hyaluronan degradation(NFUNC_0069)
必須A
HYSA
(NRULE_0232)
Hyaluronate lyaseSSEG_00502
Hydroxyectoine biosynthesis(NFUNC_0057)
必須A
ECTD
(NRULE_0189)
Ectoine hydroxylaseSSEG_08023
任意 
ECTB
(NRULE_0186)
Diaminobutyrate--2-oxoglutarate transaminaseSSEG_08021
 
ECTA
(NRULE_0187)
L-2,4-diaminobutyric acid acetyltransferaseSSEG_08020
 
ECTC
(NRULE_0188)
L-ectoine synthaseSSEG_08022
Macrolide antibiotic resistance(NFUNC_0045)
必須D
ERE
(NRULE_0168)
Erythromycin esteraseSSEG_05416
F
MGT
(NRULE_0170)
Macrolide glycosyltransferaseSSEG_10308
Metal-binding protein(NFUNC_0105)
必須A
MOP
(NRULE_0322)
Putative molybdenum-binding proteinSSEG_02800 SSEG_00324 SSEG_02796
C
MODA
(NRULE_0324)
Molybdate ABC transporter substrate-binding proteinSSEG_07854 SSEG_09047 SSEG_07465
F
SOXR
(NRULE_0329)
Redox-sensitive transcriptional activator SoxRSSEG_06220
Molybdate transport (ABC transporter)(NFUNC_0097)
必須A
MODA
(NRULE_0324)
Molybdate ABC transporter substrate-binding proteinSSEG_07465 SSEG_07854 SSEG_09047
任意 
MODB
(NRULE_0325)
Molybdate ABC transporter permease proteinSSEG_09046
(R)-pantothenate biosynthesis(NFUNC_0030)
必須A
PAND
(NRULE_0115)
Aspartate 1-decarboxylaseSSEG_05564
PANB
(NRULE_0116)
3-methyl-2-oxobutanoate hydroxymethyltransferaseSSEG_05663
PANE
(NRULE_0117)
2-dehydropantoate 2-reductaseSSEG_06162 SSEG_01908 SSEG_10291
PANC
(NRULE_0118)
Pantothenate synthetaseSSEG_09484
Penicillin resistance(NFUNC_0047)
必須A
BLAA
(NRULE_0122)
Beta-lactamase class ASSEG_04136
Protocatechuate degradation (beta-ketoadipate pathway)(NFUNC_0014)
必須A
PCAG
(NRULE_0066)
Protocatechuate 3,4-dioxygenase alpha subunitSSEG_08942
PCAH
(NRULE_0067)
Protocatechuate 3,4-dioxygenase beta subunitSSEG_02435
PCAB
(NRULE_0068)
3-carboxy-cis,cis-muconate cycloisomeraseSSEG_08941
PCAC
(NRULE_0069)
4-carboxymuconolactone decarboxylaseSSEG_08940 SSEG_06952
PCAD
(NRULE_0070)
3-oxoadipate enol-lactonaseSSEG_08940
PCAI
(NRULE_0072)
3-oxoadipate CoA-transferase subunit ASSEG_08945
PCAJ
(NRULE_0073)
3-oxoadipate CoA-transferase subunit BSSEG_08944
PCAF
(NRULE_0074)
Beta-ketoadipyl-CoA thiolaseSSEG_03720 SSEG_08943
B
PCAG
(NRULE_0066)
Protocatechuate 3,4-dioxygenase alpha subunitSSEG_08942
PCAH
(NRULE_0067)
Protocatechuate 3,4-dioxygenase beta subunitSSEG_02435
PCAB
(NRULE_0068)
3-carboxy-cis,cis-muconate cycloisomeraseSSEG_08941
PCAL
(NRULE_0071)
3-oxoadipate enol-lactone hydrolase/4-carboxymuconolactone decarboxylaseSSEG_08940
PCAI
(NRULE_0072)
3-oxoadipate CoA-transferase subunit ASSEG_08945
PCAJ
(NRULE_0073)
3-oxoadipate CoA-transferase subunit BSSEG_08944
PCAF
(NRULE_0074)
Beta-ketoadipyl-CoA thiolaseSSEG_03720 SSEG_08943
Streptomycin resistance(NFUNC_0054)
必須C
APH6
(NRULE_0155)
Streptomycin 6-kinaseSSEG_08349 SSEG_03921 SSEG_06914
Trehalose biosynthesis (from maltooligosaccharide)(NFUNC_0037)
必須A
TREY
(NRULE_0140)
Maltooligosyl trehalose synthaseSSEG_07983
TREZ
(NRULE_0141)
Malto-oligosyltrehalose trehalohydrolaseSSEG_11204
任意 
GLGX
(NRULE_0139)
Glycogen debranching enzymeSSEG_07982 SSEG_10504 SSEG_00594
Trehalose biosynthesis (from maltose)(NFUNC_0034)
必須B
TRES
(NRULE_0128)
Trehalose synthaseSSEG_08421 SSEG_09736
Uptake of osmoprotectant(NFUNC_0061)
必須B
EHUB
(NRULE_0216)
Ectoine ABC transporter substrate-binding proteinSSEG_08534
EHUC
(NRULE_0217)
Ectoine ABC transporter permease proteinSSEG_08535
EHUD
(NRULE_0218)
Ectoine ABC transporter permease proteinSSEG_08536
EHUA
(NRULE_0219)
Ectoine ABC transporter ATP-binding proteinSSEG_08537
C
BCCT
(NRULE_0220)
BCCT family transporterSSEG_02476
Vancomycin resistance (via D-Ala-D-Lac precursor)(NFUNC_0089)
必須A
VANA
(NRULE_0265)
D-alanine--D-lactate ligaseSSEG_10121
VANH
(NRULE_0266)
D-specific alpha-keto acid dehydrogenaseSSEG_10120
VANX
(NRULE_0267)
D-alanyl-D-alanine dipeptidaseSSEG_10122
任意 
VANR
(NRULE_0284)
Two-component system response regulator VanRSSEG_08352
 
VANS
(NRULE_0290)
Two-component system histidine kinase VanSSSEG_08353 SSEG_10728
 
VANJ
(NRULE_0295)
Teicoplanin resistance proteinSSEG_06237
 
VANK
(NRULE_0296)
Glycyltransferase VanKSSEG_07177
 
MURF2
(NRULE_0297)
UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-lactate ligaseSSEG_07178
Vitamin B6 biosynthesis (PdxS/PdxT pathway)(NFUNC_0059)
必須A
PDXS
(NRULE_0206)
Pyridoxal biosynthesis lyase PdxSSSEG_05033
PDXT
(NRULE_0207)
Glutamine amidotransferase subunit PdxTSSEG_05032

ゲノム配列情報

BioProject IDPRJNA28555
ローカスタグSSEG
INSDC entriesABJJ02000000
ステータスWGS
解析状況
コンティグ数552
サイズ(bp) 9,055,790
遺伝子数 8,205
フィニッシングゴール
アセンブル方法Arachne v. April 2007
冗長度8x
シーケンス方法
  • ABI
参考文献

データダウンロード

ゲノム塩基配列 CDS塩基配列 CDSアミノ酸変換配列 遺伝子/ORF リスト
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