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Microbe : Rhizobium tropici

Microbe Description

NBRC No. 15247
Scientific name Rhizobium tropici
Synonymous name Not assigned
History IFO 15247 <- Cent. Investigacion-UNAM (E. Martinez-Romero, CIAT 899)
Other culture collection No. ATCC 49672=DSM 11418=HAMBI 1163=IAM 14206=JCM 21072=LMG 9503=OUT 30011
Other No. CIAT 899
Reference
1715738
Rhizobium tropici, a novel species nodulating Phaseolus vulgaris L. beans and Leucaena sp. trees. (Int J Syst Bacteriol. 1991)

Functional Potential >>Details

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TypePattern Component Gene CDS
Alanine racemization(NFUNC_0063)
RequireA
ALR
(NRULE_0228)
Alanine racemaseRTCIAT899_PC06965 RTCIAT899_CH06025
D-allose biosynthesis(NFUNC_0077)
RequireA
LRHI
(NRULE_0242)
L-rhamnose isomeraseRTCIAT899_PC02900
Aminoglycoside resistance (by aminoglycoside O-phosphotransferase)(NFUNC_0043)
RequireA
APH6
(NRULE_0155)
Streptomycin 6-kinaseRTCIAT899_PC02855
B
APH3
(NRULE_0156)
Aminoglycoside 3'-phosphotransferaseRTCIAT899_CH00745
Ampicillin resistance(NFUNC_0046)
RequireA
BLAA
(NRULE_0122)
Beta-lactamase class ARTCIAT899_CH05265
Anthranilate biosynthesis(NFUNC_0038)
RequireA
GLAT
(NRULE_0142)
Glutamine amidotransferaseRTCIAT899_CH12950
TRPE
(NRULE_0143)
Anthranilate synthase component IRTCIAT899_CH12950
Arginine degradation(NFUNC_0074)
RequireA
ARGI
(NRULE_0239)
ArginaseRTCIAT899_CH16615
Aromatic azo compounds degradation(NFUNC_0073)
RequireA
AZOR
(NRULE_0236)
FMN-dependent NADH-azoreductaseRTCIAT899_CH07715
Bacitracin resistance(NFUNC_0022)
RequireA
UPPP
(NRULE_0097)
Undecaprenyl-diphosphataseRTCIAT899_PC04860 RTCIAT899_CH01930
Beta-lactam antibiotic resistance(NFUNC_0033)
RequireA
BLAA
(NRULE_0122)
Beta-lactamase class ARTCIAT899_CH05265
C
BLAC
(NRULE_0124)
Beta-lactamase class CRTCIAT899_PC04360
Betaine biosynthesis (from choline)(NFUNC_0049)
RequireA
BETA
(NRULE_0175)
Choline dehydrogenaseRTCIAT899_CH04945
Bioplastic degradation(NFUNC_0015)
RequireA
PHAZ1
(NRULE_0023)
Intracellular poly(3-hydroxyalkanoate) depolymeraseRTCIAT899_CH00090
B
PHAZ2
(NRULE_0080)
Poly(3-hydroxyalkanoate) depolymeraseRTCIAT899_CH06585
Bioplastic synthesis(NFUNC_0001)
RequireA
PHAC1
(NRULE_0010)
Poly(3-hydroxyalkanoate) polymeraseRTCIAT899_CH08060
Participant 
PHAB
(NRULE_0011)
Acetoacetyl-CoA reductaseRTCIAT899_CH18010
 
PHAP1
(NRULE_0374)
PhasinRTCIAT899_CH08450 RTCIAT899_CH03625 RTCIAT899_PB00665
Cephalosporin resistance(NFUNC_0048)
RequireA
BLAC
(NRULE_0124)
Beta-lactamase class CRTCIAT899_PC04360
Participant 
BLAA
(NRULE_0122)
Beta-lactamase class ARTCIAT899_CH05265
Kanamycin resistance(NFUNC_0052)
RequireC
APH3
(NRULE_0156)
Aminoglycoside 3'-phosphotransferaseRTCIAT899_CH00745
Metal-binding protein(NFUNC_0105)
RequireA
MOP
(NRULE_0322)
Putative molybdenum-binding proteinRTCIAT899_CH00360 RTCIAT899_CH03495 RTCIAT899_CH11630 RTCIAT899_PC03550 RTCIAT899_CH18475 RTCIAT899_CH17815 RTCIAT899_PC04770 RTCIAT899_PC07890 RTCIAT899_PC09115 RTCIAT899_CH17670 RTCIAT899_CH15760
C
MODA
(NRULE_0324)
Molybdate ABC transporter substrate-binding proteinRTCIAT899_PC04070 RTCIAT899_CH03475 RTCIAT899_CH00950 RTCIAT899_CH10855 RTCIAT899_CH18465
E
CUER
(NRULE_0328)
Copper-responsive transcriptional regulator CueRRTCIAT899_PC09590
F
SOXR
(NRULE_0329)
Redox-sensitive transcriptional activator SoxRRTCIAT899_CH16685
H
NIKR
(NRULE_0331)
Nickel-responsive transcriptional regulator NikRRTCIAT899_PC07025
Molybdate transport (ABC transporter)(NFUNC_0097)
RequireA
MODA
(NRULE_0324)
Molybdate ABC transporter substrate-binding proteinRTCIAT899_PC04070 RTCIAT899_CH00950 RTCIAT899_CH10855 RTCIAT899_CH03475 RTCIAT899_CH18465
Participant 
MODB
(NRULE_0325)
Molybdate ABC transporter permease proteinRTCIAT899_CH18470
 
MODC
(NRULE_0326)
Molybdate ABC transporter ATP-binding proteinRTCIAT899_CH18475 RTCIAT899_CH00960
Nitrile hydratase(NFUNC_0002)
RequireA
NHAA
(NRULE_0001)
Nitrile hydratase subunit alphaRTCIAT899_CH10995
NHAB
(NRULE_0002)
Nitrile hydratase subunit betaRTCIAT899_CH10990
Participant 
P14K
(NRULE_0006)
Nitrile hydratase activator P14KRTCIAT899_CH10985
 
COBW
(NRULE_0007)
CobW/P47K family proteinRTCIAT899_CH10510 RTCIAT899_CH10620 RTCIAT899_CH15430 RTCIAT899_CH16545 RTCIAT899_PC08775
Nitrogenase(NFUNC_0094)
RequireA
NIFD
(NRULE_0347)
Nitrogenase molybdenum-iron protein alpha chainRTCIAT899_PB01570
NIFK
(NRULE_0348)
Nitrogenase molybdenum-iron protein beta chainRTCIAT899_PB01575
VNFH
(NRULE_0353)
Nitrogenase reductaseRTCIAT899_PB01565
Penicillin resistance(NFUNC_0047)
RequireA
BLAA
(NRULE_0122)
Beta-lactamase class ARTCIAT899_CH05265
Phenol degradation(NFUNC_0028)
RequireB
PHEA1
(NRULE_0083)
Aromatic ring hydroxylaseRTCIAT899_PC03915
Participant 
FDR2
(NRULE_0057)
Ferredoxin reductaseRTCIAT899_PC07065 RTCIAT899_CH05730
 
FDR1
(NRULE_0032)
Oxygenase electron transfer componentRTCIAT899_CH04355 RTCIAT899_PC09270 RTCIAT899_PC02410 RTCIAT899_PC00090
 
FDX1
(NRULE_0034)
Putative Rieske-type ferredoxinRTCIAT899_PC01360 RTCIAT899_CH04350 RTCIAT899_PC07060 RTCIAT899_PC05280 RTCIAT899_CH12765 RTCIAT899_PC02580
 
FADR1
(NRULE_0101)
NADH-dependent flavin reductaseRTCIAT899_CH09735 RTCIAT899_CH14015 RTCIAT899_PC03910 RTCIAT899_PC07815 RTCIAT899_PC08155 RTCIAT899_CH09335 RTCIAT899_CH18405 RTCIAT899_PA00795
Protocatechuate degradation (beta-ketoadipate pathway)(NFUNC_0014)
RequireA
PCAG
(NRULE_0066)
Protocatechuate 3,4-dioxygenase alpha subunitRTCIAT899_PC07370
PCAH
(NRULE_0067)
Protocatechuate 3,4-dioxygenase beta subunitRTCIAT899_PC07375
PCAB
(NRULE_0068)
3-carboxy-cis,cis-muconate cycloisomeraseRTCIAT899_PC07365
PCAC
(NRULE_0069)
4-carboxymuconolactone decarboxylaseRTCIAT899_PC07380
PCAD
(NRULE_0070)
3-oxoadipate enol-lactonaseRTCIAT899_PC07385
PCAI
(NRULE_0072)
3-oxoadipate CoA-transferase subunit ARTCIAT899_PC07420
PCAJ
(NRULE_0073)
3-oxoadipate CoA-transferase subunit BRTCIAT899_PC07425
PCAF
(NRULE_0074)
Beta-ketoadipyl-CoA thiolaseRTCIAT899_PC07430
Streptomycin resistance(NFUNC_0054)
RequireC
APH6
(NRULE_0155)
Streptomycin 6-kinaseRTCIAT899_PC02855
Participant 
APH3
(NRULE_0156)
Aminoglycoside 3'-phosphotransferaseRTCIAT899_CH00745
Trehalose biosynthesis (from maltose)(NFUNC_0034)
RequireB
TRES
(NRULE_0128)
Trehalose synthaseRTCIAT899_CH12010
Trehalose biosynthesis (from NDP-glucose and glucose-6-phosphate)(NFUNC_0031)
RequireA
TPS
(NRULE_0119)
Trehalose-phosphate synthaseRTCIAT899_CH02085
TPP
(NRULE_0120)
Trehalose-6-phosphate phosphataseRTCIAT899_CH02090
Uptake of osmoprotectant(NFUNC_0061)
RequireB
EHUB
(NRULE_0216)
Ectoine ABC transporter substrate-binding proteinRTCIAT899_PC08130
EHUC
(NRULE_0217)
Ectoine ABC transporter permease proteinRTCIAT899_PC08125
EHUD
(NRULE_0218)
Ectoine ABC transporter permease proteinRTCIAT899_PC08120
EHUA
(NRULE_0219)
Ectoine ABC transporter ATP-binding proteinRTCIAT899_PC08115

Genomic Overview

BioProject IDPRJNA42391
Locus_tag
INSDC entriesCP004015
Sequence statusComplete
Current status
Contig number4
Size(bp) 6,686,334
Gene 6,287
Finishing goal
Assembly method
Coverage
Technology
Reference
  • Genomic basis of broad host range and environmental adaptability of Rhizobium tropici CIAT 899 and Rhizobium sp. PRF 81 which are used in inoculants for common bean (Phaseolus vulgaris L.). (BMC Genomics. 2012) PMID: 23270491

Data Download

Genomic nucleotide sequence Nucleotide sequence of the coding regions Translation of the coding sequneces List of genes / ORFs
FASTA
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FASTA
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FASTA
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TSV
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2.0 MB 1.7 MB 1.2 MB 553.1 KB