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微生物 : Streptomyces ghanaensis

微生物株情報

NBRC番号 15414
学名 Streptomyces ghanaensis
別名（シノニム） 該当データなし
由来 IFO 15414 <- JCM 4963 <- KCC S-0963 <- DSM 40746 <- Farbwerke Hoechst A.G. (FH 1290)
他保存機関番号 ATCC 14672=CBS 544.70=CECT 3210=DSM 40746=JCM 4963=NRRL B-12104
他株番号 FH 1290=KCC S-0963
参考文献
5883490
Moenomycin, a new antibiotic. I. Fermentation and isolation. (Antimicrob Agents Chemother (Bethesda). 1965)
19640006
Complete characterization of the seventeen step moenomycin biosynthetic pathway. (Biochemistry. 2009)

推定保有機能 >>詳細

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タイプパターン 構成遺伝子 該当CDS
D-allose biosynthesis(NFUNC_0077)
必須A
LRHI
(NRULE_0242)
L-rhamnose isomeraseSSFG_00600
Aminoglycoside resistance (by aminoglycoside N-acetyltransferase)(NFUNC_0041)
必須A
AAC3
(NRULE_0149)
Aminoglycoside N(3')-acetyltransferaseSSFG_05444
Aminoglycoside resistance (by aminoglycoside O-nucleotidyltransferase)(NFUNC_0042)
必須D
ANT3
(NRULE_0154)
Streptomycin 3''-adenylyltransferaseSSFG_06671
Aminoglycoside resistance (by aminoglycoside O-phosphotransferase)(NFUNC_0043)
必須A
APH6
(NRULE_0155)
Streptomycin 6-kinaseSSFG_06497 SSFG_03946 SSFG_02042
B
APH3
(NRULE_0156)
Aminoglycoside 3'-phosphotransferaseSSFG_07398
Ampicillin resistance(NFUNC_0046)
必須A
BLAA
(NRULE_0122)
Beta-lactamase class ASSFG_03503
Bacitracin resistance(NFUNC_0022)
必須A
UPPP
(NRULE_0097)
Undecaprenyl-diphosphataseSSFG_06033
Benzoate degradation (via hydroxylation by dioxygenase)(NFUNC_0017)
必須A
BENA
(NRULE_0046)
Benzoate 1,2-dioxygenase alpha subunitSSFG_07172
BENB
(NRULE_0047)
Benzoate 1,2-dioxygenase beta subunitSSFG_07173
BEND
(NRULE_0082)
1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenaseSSFG_07174
任意 
FDR1
(NRULE_0032)
Oxygenase electron transfer componentSSFG_06040 SSFG_07151 SSFG_03575
 
FDX1
(NRULE_0034)
Putative Rieske-type ferredoxinSSFG_00020 SSFG_01650 SSFG_05211 SSFG_05407 SSFG_05448 SSFG_05622 SSFG_06012 SSFG_07152 SSFG_07172 SSFG_00801
 
FDR2
(NRULE_0057)
Ferredoxin reductaseSSFG_05253 SSFG_06740 SSFG_04890
Beta-lactam antibiotic resistance(NFUNC_0033)
必須A
BLAA
(NRULE_0122)
Beta-lactamase class ASSFG_03503
Bioplastic degradation(NFUNC_0015)
必須B
PHAZ2
(NRULE_0080)
Poly(3-hydroxyalkanoate) depolymeraseSSFG_00644
Ectoine biosynthesis(NFUNC_0056)
必須A
ECTB
(NRULE_0186)
Diaminobutyrate--2-oxoglutarate transaminaseSSFG_05505
ECTA
(NRULE_0187)
L-2,4-diaminobutyric acid acetyltransferaseSSFG_05506
ECTC
(NRULE_0188)
L-ectoine synthaseSSFG_05504
GABA biosynthesis(NFUNC_0066)
必須A
GAD
(NRULE_0231)
Glutamate decarboxylaseSSFG_03204
Hydroxyectoine biosynthesis(NFUNC_0057)
必須A
ECTD
(NRULE_0189)
Ectoine hydroxylaseSSFG_05503
任意 
ECTB
(NRULE_0186)
Diaminobutyrate--2-oxoglutarate transaminaseSSFG_05505
 
ECTA
(NRULE_0187)
L-2,4-diaminobutyric acid acetyltransferaseSSFG_05506
 
ECTC
(NRULE_0188)
L-ectoine synthaseSSFG_05504
Kanamycin resistance(NFUNC_0052)
必須C
APH3
(NRULE_0156)
Aminoglycoside 3'-phosphotransferaseSSFG_07398
任意 
AAC3
(NRULE_0149)
Aminoglycoside N(3')-acetyltransferaseSSFG_05444
Macrolide antibiotic resistance(NFUNC_0045)
必須B
RLMA
(NRULE_0165)
23S rRNA (guanine-N(1))-methyltransferaseSSFG_00294
D
ERE
(NRULE_0168)
Erythromycin esteraseSSFG_00585 SSFG_00350
F
MGT
(NRULE_0170)
Macrolide glycosyltransferaseSSFG_01610
Metal-binding protein(NFUNC_0105)
必須A
MOP
(NRULE_0322)
Putative molybdenum-binding proteinSSFG_03944 SSFG_05996 SSFG_05993 SSFG_02086
C
MODA
(NRULE_0324)
Molybdate ABC transporter substrate-binding proteinSSFG_00090 SSFG_07877 SSFG_04399 SSFG_05428 SSFG_05484 SSFG_05995
F
SOXR
(NRULE_0329)
Redox-sensitive transcriptional activator SoxRSSFG_05681
Molybdate transport (ABC transporter)(NFUNC_0097)
必須A
MODA
(NRULE_0324)
Molybdate ABC transporter substrate-binding proteinSSFG_05428 SSFG_05995 SSFG_07877 SSFG_04399 SSFG_05484 SSFG_00090
任意 
MODB
(NRULE_0325)
Molybdate ABC transporter permease proteinSSFG_05994
Penicillin resistance(NFUNC_0047)
必須A
BLAA
(NRULE_0122)
Beta-lactamase class ASSFG_03503
Phenol degradation(NFUNC_0028)
必須B
PHEA1
(NRULE_0083)
Aromatic ring hydroxylaseSSFG_01849 SSFG_00361 SSFG_07682
任意 
FDR2
(NRULE_0057)
Ferredoxin reductaseSSFG_05253 SSFG_06740 SSFG_04890
 
FDR1
(NRULE_0032)
Oxygenase electron transfer componentSSFG_03575 SSFG_06040 SSFG_07151
 
FDX1
(NRULE_0034)
Putative Rieske-type ferredoxinSSFG_05622 SSFG_05407 SSFG_07172 SSFG_05448 SSFG_07152 SSFG_06012 SSFG_05211 SSFG_01650 SSFG_00801 SSFG_00020
 
FADR1
(NRULE_0101)
NADH-dependent flavin reductaseSSFG_06207 SSFG_07806 SSFG_07711 SSFG_03955 SSFG_03498 SSFG_01844 SSFG_01833 SSFG_00368
Protocatechuate degradation (beta-ketoadipate pathway)(NFUNC_0014)
必須A
PCAG
(NRULE_0066)
Protocatechuate 3,4-dioxygenase alpha subunitSSFG_00971
PCAH
(NRULE_0067)
Protocatechuate 3,4-dioxygenase beta subunitSSFG_00970
PCAB
(NRULE_0068)
3-carboxy-cis,cis-muconate cycloisomeraseSSFG_00972
PCAC
(NRULE_0069)
4-carboxymuconolactone decarboxylaseSSFG_00973
PCAD
(NRULE_0070)
3-oxoadipate enol-lactonaseSSFG_00973
PCAI
(NRULE_0072)
3-oxoadipate CoA-transferase subunit ASSFG_00968 SSFG_07167 SSFG_01806
PCAJ
(NRULE_0073)
3-oxoadipate CoA-transferase subunit BSSFG_07166 SSFG_00969 SSFG_01805 SSFG_00643
PCAF
(NRULE_0074)
Beta-ketoadipyl-CoA thiolaseSSFG_00870 SSFG_01807 SSFG_07165
B
PCAG
(NRULE_0066)
Protocatechuate 3,4-dioxygenase alpha subunitSSFG_00971
PCAH
(NRULE_0067)
Protocatechuate 3,4-dioxygenase beta subunitSSFG_00970
PCAB
(NRULE_0068)
3-carboxy-cis,cis-muconate cycloisomeraseSSFG_00972
PCAL
(NRULE_0071)
3-oxoadipate enol-lactone hydrolase/4-carboxymuconolactone decarboxylaseSSFG_00973
PCAI
(NRULE_0072)
3-oxoadipate CoA-transferase subunit ASSFG_01806 SSFG_07167 SSFG_00968
PCAJ
(NRULE_0073)
3-oxoadipate CoA-transferase subunit BSSFG_00643 SSFG_00969 SSFG_01805 SSFG_07166
PCAF
(NRULE_0074)
Beta-ketoadipyl-CoA thiolaseSSFG_07165 SSFG_00870 SSFG_01807
Streptogramin resistance(NFUNC_0027)
必須B
VGB
(NRULE_0114)
Virginiamycin B lyaseSSFG_03991
Streptomycin resistance(NFUNC_0054)
必須B
ANT3
(NRULE_0154)
Streptomycin 3''-adenylyltransferaseSSFG_06671
C
APH6
(NRULE_0155)
Streptomycin 6-kinaseSSFG_03946 SSFG_02042 SSFG_06497
任意 
APH3
(NRULE_0156)
Aminoglycoside 3'-phosphotransferaseSSFG_07398
Trehalose biosynthesis (from maltooligosaccharide)(NFUNC_0037)
必須A
TREY
(NRULE_0140)
Maltooligosyl trehalose synthaseSSFG_01618
TREZ
(NRULE_0141)
Malto-oligosyltrehalose trehalohydrolaseSSFG_01622
任意 
GLGX
(NRULE_0139)
Glycogen debranching enzymeSSFG_06481 SSFG_01617 SSFG_02235
Trehalose biosynthesis (from maltose)(NFUNC_0034)
必須B
TRES
(NRULE_0128)
Trehalose synthaseSSFG_02250 SSFG_06476
Uptake of osmoprotectant(NFUNC_0061)
必須B
EHUB
(NRULE_0216)
Ectoine ABC transporter substrate-binding proteinSSFG_04543
EHUC
(NRULE_0217)
Ectoine ABC transporter permease proteinSSFG_04542
EHUD
(NRULE_0218)
Ectoine ABC transporter permease proteinSSFG_04541
EHUA
(NRULE_0219)
Ectoine ABC transporter ATP-binding proteinSSFG_04540
C
BCCT
(NRULE_0220)
BCCT family transporterSSFG_00672 SSFG_01152 SSFG_00938
Vitamin B6 biosynthesis (PdxS/PdxT pathway)(NFUNC_0059)
必須A
PDXS
(NRULE_0206)
Pyridoxal biosynthesis lyase PdxSSSFG_05854
PDXT
(NRULE_0207)
Glutamine amidotransferase subunit PdxTSSFG_05855

ゲノム配列情報

BioProject IDPRJNA32145
ローカスタグSSFG
INSDC entriesABYA01000000
ステータスWGS
解析状況
コンティグ数616
サイズ(bp) 8,223,278
遺伝子数 7,891
フィニッシングゴール
アセンブル方法
冗長度11.6X
シーケンス方法
参考文献

データダウンロード

ゲノム塩基配列 CDS塩基配列 CDSアミノ酸変換配列 遺伝子/ORF リスト
FASTA
gz		 FASTA
gz		 FASTA
gz		 TSV
uncompressed
2.3 MB 2.1 MB 1.4 MB 568.8 KB