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微生物 : Gordonia alkanivorans

微生物株情報

NBRC番号 16433
学名 Gordonia alkanivorans
別名（シノニム） Gordonia niti
由来 IFO 16433 <- DSM 44369 <- Hans-Knoll Inst., Jena (C. Kummer, HKI 0136)
他保存機関番号 DSM 44369=JCM 10677=CIP 106363
他株番号 HKI 0136
参考文献
10555331
Gordonia alkanivorans sp. nov., isolated from tar-contaminated soil. (Int J Syst Bacteriol. 1999)

推定保有機能 >>詳細

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タイプパターン 構成遺伝子 該当CDS
Alanine racemization(NFUNC_0063)
必須A
ALR
(NRULE_0228)
Alanine racemaseGOALK_112_00030
n-alkane hydroxylation(NFUNC_0008)
必須A
CYP153
(NRULE_0041)
Cytochrome P450 CYP153GOALK_030_00300
C
MMA
(NRULE_0027)
Multicomponent monooxygenase alpha subunitGOALK_097_00610 GOALK_097_00590
MMB
(NRULE_0028)
Multicomponent monooxygenase beta subunitGOALK_097_00610 GOALK_097_00590
FDR1
(NRULE_0032)
Oxygenase electron transfer componentGOALK_046_00030 GOALK_047_00140 GOALK_050_02720 GOALK_056_01700 GOALK_092_00710 GOALK_097_02350 GOALK_097_00600 GOALK_097_00840 GOALK_118_00150 GOALK_118_00240 GOALK_120_01060 GOALK_122_00020 GOALK_026_00820
MME
(NRULE_0033)
Multicomponent monooxygenase effector proteinGOALK_097_00620
任意 
FDX1
(NRULE_0034)
Putative Rieske-type ferredoxinGOALK_002_01210 GOALK_026_00690 GOALK_092_00560 GOALK_035_00050 GOALK_045_00600 GOALK_047_00120 GOALK_050_01650 GOALK_086_00020 GOALK_056_01250
Aminoglycoside resistance (by aminoglycoside O-phosphotransferase)(NFUNC_0043)
必須A
APH6
(NRULE_0155)
Streptomycin 6-kinaseGOALK_089_00400
Aniline degradation (conversion into catechol)(NFUNC_0075)
必須A
ATDA1
(NRULE_0240)
Gamma-glutamylanilide synthetaseGOALK_035_00090
ATDA3
(NRULE_0357)
Aniline dioxygenase large subunitGOALK_035_00050
ATDA4
(NRULE_0358)
Aniline dioxygenase small subunitGOALK_035_00060
任意 
FDR1
(NRULE_0032)
Oxygenase electron transfer componentGOALK_056_01700 GOALK_026_00820 GOALK_046_00030 GOALK_047_00140 GOALK_050_02720 GOALK_092_00710 GOALK_122_00020 GOALK_120_01060 GOALK_118_00240 GOALK_118_00150 GOALK_097_00840 GOALK_097_00600 GOALK_097_02350
 
FDX1
(NRULE_0034)
Putative Rieske-type ferredoxinGOALK_026_00690 GOALK_002_01210 GOALK_050_01650 GOALK_056_01250 GOALK_086_00020 GOALK_092_00560 GOALK_047_00120 GOALK_045_00600 GOALK_035_00050
 
FDR2
(NRULE_0057)
Ferredoxin reductaseGOALK_065_00110 GOALK_035_00110
Anthranilate biosynthesis(NFUNC_0038)
必須A
GLAT
(NRULE_0142)
Glutamine amidotransferaseGOALK_120_01870 GOALK_117_00210
TRPE
(NRULE_0143)
Anthranilate synthase component IGOALK_066_00120
Arsenical resistance(NFUNC_0004)
必須D
ARSB2
(NRULE_0016)
Arsenite resistance protein ArsBGOALK_114_00300 GOALK_105_00020
ARSC1
(NRULE_0017)
Arsenate reductaseGOALK_038_00940
Bacitracin resistance(NFUNC_0022)
必須A
UPPP
(NRULE_0097)
Undecaprenyl-diphosphataseGOALK_099_00970
Benzoate degradation (via hydroxylation by dioxygenase)(NFUNC_0017)
必須A
BENA
(NRULE_0046)
Benzoate 1,2-dioxygenase alpha subunitGOALK_047_00120
BENB
(NRULE_0047)
Benzoate 1,2-dioxygenase beta subunitGOALK_047_00130
BEND
(NRULE_0082)
1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenaseGOALK_047_00140
任意 
BENC
(NRULE_0055)
Benzoate 1,2-dioxygenase electron transfer componentGOALK_047_00140
 
FDR1
(NRULE_0032)
Oxygenase electron transfer componentGOALK_118_00150 GOALK_026_00820 GOALK_046_00030 GOALK_047_00140 GOALK_050_02720 GOALK_056_01700 GOALK_092_00710 GOALK_097_02350 GOALK_097_00600 GOALK_097_00840 GOALK_118_00240 GOALK_120_01060 GOALK_122_00020
 
FDX1
(NRULE_0034)
Putative Rieske-type ferredoxinGOALK_045_00600 GOALK_047_00120 GOALK_092_00560 GOALK_086_00020 GOALK_056_01250 GOALK_050_01650 GOALK_002_01210 GOALK_026_00690 GOALK_035_00050
 
FDR2
(NRULE_0057)
Ferredoxin reductaseGOALK_065_00110 GOALK_035_00110
Betaine biosynthesis (from choline)(NFUNC_0049)
必須C
CHOX
(NRULE_0178)
Choline oxidaseGOALK_050_01160
Ectoine biosynthesis(NFUNC_0056)
必須A
ECTB
(NRULE_0186)
Diaminobutyrate--2-oxoglutarate transaminaseGOALK_040_00390
ECTA
(NRULE_0187)
L-2,4-diaminobutyric acid acetyltransferaseGOALK_040_00380
ECTC
(NRULE_0188)
L-ectoine synthaseGOALK_040_00400
GABA biosynthesis(NFUNC_0066)
必須A
GAD
(NRULE_0231)
Glutamate decarboxylaseGOALK_060_00450
Mercury resistance(NFUNC_0005)
必須A
MERA
(NRULE_0008)
Mercuric reductaseGOALK_060_00910
Metal-binding protein(NFUNC_0105)
必須A
MOP
(NRULE_0322)
Putative molybdenum-binding proteinGOALK_072_00080 GOALK_045_00050 GOALK_045_00080 GOALK_045_00010
C
MODA
(NRULE_0324)
Molybdate ABC transporter substrate-binding proteinGOALK_045_00070 GOALK_072_00110
F
SOXR
(NRULE_0329)
Redox-sensitive transcriptional activator SoxRGOALK_038_00430
Molybdate transport (ABC transporter)(NFUNC_0097)
必須A
MODA
(NRULE_0324)
Molybdate ABC transporter substrate-binding proteinGOALK_045_00070 GOALK_072_00110
任意 
MODB
(NRULE_0325)
Molybdate ABC transporter permease proteinGOALK_045_00060
Phenol degradation(NFUNC_0028)
必須B
PHEA1
(NRULE_0083)
Aromatic ring hydroxylaseGOALK_038_00960 GOALK_065_00040
任意 
FDR2
(NRULE_0057)
Ferredoxin reductaseGOALK_065_00110 GOALK_035_00110
 
FDR1
(NRULE_0032)
Oxygenase electron transfer componentGOALK_026_00820 GOALK_122_00020 GOALK_120_01060 GOALK_118_00240 GOALK_118_00150 GOALK_097_00840 GOALK_097_00600 GOALK_097_02350 GOALK_092_00710 GOALK_056_01700 GOALK_050_02720 GOALK_047_00140 GOALK_046_00030
 
MME
(NRULE_0033)
Multicomponent monooxygenase effector proteinGOALK_097_00620
 
FDX1
(NRULE_0034)
Putative Rieske-type ferredoxinGOALK_035_00050 GOALK_026_00690 GOALK_002_01210 GOALK_045_00600 GOALK_092_00560 GOALK_086_00020 GOALK_056_01250 GOALK_050_01650 GOALK_047_00120
 
FADR1
(NRULE_0101)
NADH-dependent flavin reductaseGOALK_038_00980 GOALK_050_01680 GOALK_033_01250 GOALK_026_00790 GOALK_026_00060 GOALK_067_00250 GOALK_079_00080 GOALK_092_00120 GOALK_110_00430 GOALK_065_00050
Streptomycin resistance(NFUNC_0054)
必須C
APH6
(NRULE_0155)
Streptomycin 6-kinaseGOALK_089_00400
Thiocyanate hydrolase(NFUNC_0003)
必須A
SCNA
(NRULE_0003)
Thiocyanate hydrolase subunit alphaGOALK_120_01460
SCNB
(NRULE_0004)
Thiocyanate hydrolase subunit betaGOALK_120_01460
SCNC
(NRULE_0005)
Thiocyanate hydrolase subunit gammaGOALK_120_01470
B
SCNA
(NRULE_0003)
Thiocyanate hydrolase subunit alphaGOALK_120_01460
SCNC
(NRULE_0005)
Thiocyanate hydrolase subunit gammaGOALK_120_01470
C
SCNB
(NRULE_0004)
Thiocyanate hydrolase subunit betaGOALK_120_01460
SCNC
(NRULE_0005)
Thiocyanate hydrolase subunit gammaGOALK_120_01470
Trehalose biosynthesis (from maltooligosaccharide)(NFUNC_0037)
必須A
TREY
(NRULE_0140)
Maltooligosyl trehalose synthaseGOALK_084_00180
TREZ
(NRULE_0141)
Malto-oligosyltrehalose trehalohydrolaseGOALK_002_01900
任意 
GLGX
(NRULE_0139)
Glycogen debranching enzymeGOALK_084_00170
Trehalose biosynthesis (from NDP-glucose and glucose-6-phosphate)(NFUNC_0031)
必須A
TPS
(NRULE_0119)
Trehalose-phosphate synthaseGOALK_050_00720
TPP
(NRULE_0120)
Trehalose-6-phosphate phosphataseGOALK_050_00710 GOALK_014_00440
Uptake of osmoprotectant(NFUNC_0061)
必須C
BCCT
(NRULE_0220)
BCCT family transporterGOALK_038_00480 GOALK_050_01180
Vitamin B6 biosynthesis (PdxS/PdxT pathway)(NFUNC_0059)
必須A
PDXS
(NRULE_0206)
Pyridoxal biosynthesis lyase PdxSGOALK_014_00360
PDXT
(NRULE_0207)
Glutamine amidotransferase subunit PdxTGOALK_014_00300

ゲノム配列情報

BioProject IDPRJNA66367
ローカスタグGOALK
INSDC entriesBACI00000000
ステータスWGS
解析状況High-Quality Draft
コンティグ数132
サイズ(bp) 5,071,550
遺伝子数 4,655
フィニッシングゴールNoncontiguous Finished
アセンブル方法Newbler v. 2.3
冗長度
シーケンス方法
  • Roche 454
参考文献

データダウンロード

ゲノム塩基配列 CDS塩基配列 CDSアミノ酸変換配列 遺伝子/ORF リスト
FASTA
gz		 FASTA
gz		 FASTA
gz		 TSV
uncompressed
1.5 MB 1.4 MB 961.1 KB 363.6 KB