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微生物 : Shimwellia blattae

微生物株情報

NBRC番号 105725
学名 Shimwellia blattae
別名（シノニム） Escherichia blattae
由来 GTC 01342 <- DSM 4481 <- ATCC 29907 <- CDC 9005-74 <- N.R.H. Burgess
他保存機関番号 ATCC 29907=CIP 103175=CCUG 14803=GTC 01342=NCTC 12127=CIP 104942=DSM 4481=LMG 3030=JCM 1650=HAMBI 1692
他株番号 CDC 9005-74
参考文献
4571611
Aerobic bacteria occurring in the hind-gut of the cockroach, Blatta orientalis. (J Hyg (Lond). 1973)
19661513
Gram-negative bacteria associated with brewery yeasts: reclassification of Obesumbacterium proteus biogroup 2 as Shimwellia pseudoproteus gen. nov., sp. nov., and transfer of Escherichia blattae to Shimwellia blattae comb. nov. (Int J Syst Evol Microbiol. 2010)

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タイプパターン 構成遺伝子 該当CDS
Alanine racemization(NFUNC_0063)
必須A
ALR
(NRULE_0228)
Alanine racemaseEB105725_41_00100 EB105725_24_00110
Anthranilate biosynthesis(NFUNC_0038)
必須A
GLAT
(NRULE_0142)
Glutamine amidotransferaseEB105725_36_00380 EB105725_19_00070
TRPE
(NRULE_0143)
Anthranilate synthase component IEB105725_19_00080
Anthranilate degradation (via hydroxylation)(NFUNC_0018)
必須A
ANTA
(NRULE_0044)
Anthranilate 1,2-dioxygenase large subunitEB105725_04_00070
ANTB
(NRULE_0045)
Anthranilate 1,2-dioxygenase small subunitEB105725_04_00060
任意 
ANTC
(NRULE_0081)
Anthranilate 1,2-dioxygenase electron transfer componentEB105725_04_00050
 
FDR1
(NRULE_0032)
Oxygenase electron transfer componentEB105725_33_00340 EB105725_26_00430 EB105725_23_00430 EB105725_19_00570 EB105725_04_03030 EB105725_04_00050 EB105725_03_01080
 
FDX1
(NRULE_0034)
Putative Rieske-type ferredoxinEB105725_23_00450 EB105725_04_02040 EB105725_04_00070 EB105725_20_00500 EB105725_20_00520 EB105725_26_00440 EB105725_26_00460
 
FDR2
(NRULE_0057)
Ferredoxin reductaseEB105725_20_00560
Aromatic azo compounds degradation(NFUNC_0073)
必須A
AZOR
(NRULE_0236)
FMN-dependent NADH-azoreductaseEB105725_26_00280 EB105725_21_00570 EB105725_21_00430
Arsenical resistance(NFUNC_0004)
必須A
ARSB1
(NRULE_0015)
Arsenical pump membrane proteinEB105725_15_00210
ARSC1
(NRULE_0017)
Arsenate reductaseEB105725_15_00220 EB105725_12_00830
任意 
ARSA
(NRULE_0014)
Arsenical pump-driving ATPaseEB105725_15_00200
 
ARSD
(NRULE_0020)
Arsenical resistance operon trans-acting repressor ArsDEB105725_15_00190
Bacitracin resistance(NFUNC_0022)
必須A
UPPP
(NRULE_0097)
Undecaprenyl-diphosphataseEB105725_20_00080
Beta-lactam antibiotic resistance(NFUNC_0033)
必須C
BLAC
(NRULE_0124)
Beta-lactamase class CEB105725_04_01180
Biotin biosynthesis(NFUNC_0051)
必須A
BIOF
(NRULE_0182)
8-amino-7-oxononanoate synthaseEB105725_03_00260
BIOA
(NRULE_0183)
Adenosylmethionine-8-amino-7-oxononanoate aminotransferaseEB105725_03_00240
BIOD
(NRULE_0184)
ATP-dependent dethiobiotin synthetase BioDEB105725_03_00280 EB105725_05_02200
BIOB
(NRULE_0185)
Biotin synthaseEB105725_03_00250
Catechol degradation (beta-ketoadipate pathway)(NFUNC_0013)
必須A
CATA
(NRULE_0052)
Catechol 1,2-dioxygenaseEB105725_23_00460
CATB2
(NRULE_0053)
(Chloro)muconate cycloisomeraseEB105725_23_00480
CATC
(NRULE_0054)
Muconolactone isomeraseEB105725_23_00470
PCAD
(NRULE_0070)
3-oxoadipate enol-lactonaseEB105725_23_00490
PCAI
(NRULE_0072)
3-oxoadipate CoA-transferase subunit AEB105725_23_00520
PCAJ
(NRULE_0073)
3-oxoadipate CoA-transferase subunit BEB105725_23_00510
PCAF
(NRULE_0074)
Beta-ketoadipyl-CoA thiolaseEB105725_19_00620 EB105725_23_00500
B
CATA
(NRULE_0052)
Catechol 1,2-dioxygenaseEB105725_23_00460
CATC
(NRULE_0054)
Muconolactone isomeraseEB105725_23_00470
PCAD
(NRULE_0070)
3-oxoadipate enol-lactonaseEB105725_23_00490
PCAI
(NRULE_0072)
3-oxoadipate CoA-transferase subunit AEB105725_23_00520
PCAJ
(NRULE_0073)
3-oxoadipate CoA-transferase subunit BEB105725_23_00510
PCAF
(NRULE_0074)
Beta-ketoadipyl-CoA thiolaseEB105725_19_00620 EB105725_23_00500
CATB1
(NRULE_0386)
Muconate cycloisomeraseEB105725_23_00480
Cephalosporin resistance(NFUNC_0048)
必須A
BLAC
(NRULE_0124)
Beta-lactamase class CEB105725_04_01180
Dihydroxy aromatic compounds degradation (via meta-cleavage pathway)(NFUNC_0011)
必須A
EDIO
(NRULE_0058)
extradiol dioxygenaseEB105725_09_00110 EB105725_26_00150 EB105725_20_00180
METAH
(NRULE_0059)
meta-cleavage compound hydrolaseEB105725_09_00120
HPDH
(NRULE_0063)
2-hydroxypent-2,4-dienoate hydrataseEB105725_09_00130
HOA
(NRULE_0064)
4-hydroxy-2-oxovalerate aldolaseEB105725_09_00150
ACDH
(NRULE_0065)
Acetaldehyde dehydrogenaseEB105725_09_00140
Folate biosynthesis(NFUNC_0044)
必須A
GLAT
(NRULE_0142)
Glutamine amidotransferaseEB105725_19_00070 EB105725_36_00380
DHPS
(NRULE_0144)
Dihydropteroate synthaseEB105725_14_00960
FOLM
(NRULE_0146)
Dihydrofolate reductase FolMEB105725_05_02010
FOLB
(NRULE_0158)
Dihydroneopterin aldolaseEB105725_04_00400 EB105725_20_00070
FOLK
(NRULE_0159)
2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinaseEB105725_11_00600
FOLC
(NRULE_0160)
Bifunctional protein FolCEB105725_04_00300
PABB
(NRULE_0161)
Para-aminobenzoate synthase component IEB105725_24_00300
PABC
(NRULE_0162)
Aminodeoxychorismate lyaseEB105725_05_00410
B
GLAT
(NRULE_0142)
Glutamine amidotransferaseEB105725_36_00380 EB105725_19_00070
DHPS
(NRULE_0144)
Dihydropteroate synthaseEB105725_14_00960
FOLA
(NRULE_0147)
Dihydrofolate reductaseEB105725_11_01420
FOLB
(NRULE_0158)
Dihydroneopterin aldolaseEB105725_04_00400 EB105725_20_00070
FOLK
(NRULE_0159)
2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinaseEB105725_11_00600
FOLC
(NRULE_0160)
Bifunctional protein FolCEB105725_04_00300
PABB
(NRULE_0161)
Para-aminobenzoate synthase component IEB105725_24_00300
PABC
(NRULE_0162)
Aminodeoxychorismate lyaseEB105725_05_00410
Macrolide antibiotic resistance(NFUNC_0045)
必須B
RLMA
(NRULE_0165)
23S rRNA (guanine-N(1))-methyltransferaseEB105725_38_00350
Metal-binding protein(NFUNC_0105)
必須A
MOP
(NRULE_0322)
Putative molybdenum-binding proteinEB105725_03_00140 EB105725_03_00100
B
MODE
(NRULE_0323)
Putative molybdate-dependent transcriptional regulatorEB105725_03_00100
C
MODA
(NRULE_0324)
Molybdate ABC transporter substrate-binding proteinEB105725_03_00120 EB105725_12_00570 EB105725_17_00720
E
CUER
(NRULE_0328)
Copper-responsive transcriptional regulator CueREB105725_01_00500
F
SOXR
(NRULE_0329)
Redox-sensitive transcriptional activator SoxREB105725_13_00060
G
ZNTR
(NRULE_0330)
Zinc-responsive transcriptional regulator ZntREB105725_45_00150
H
NIKR
(NRULE_0331)
Nickel-responsive transcriptional regulator NikREB105725_23_00130
I
ISCR
(NRULE_0332)
Rrf2 family transcriptional regulator IscREB105725_12_01210
Molybdate transport (ABC transporter)(NFUNC_0097)
必須A
MODA
(NRULE_0324)
Molybdate ABC transporter substrate-binding proteinEB105725_17_00720 EB105725_03_00120 EB105725_12_00570
任意 
MODE
(NRULE_0323)
Putative molybdate-dependent transcriptional regulatorEB105725_03_00100
 
MODB
(NRULE_0325)
Molybdate ABC transporter permease proteinEB105725_03_00130
 
MODC
(NRULE_0326)
Molybdate ABC transporter ATP-binding proteinEB105725_03_00140
(R)-pantothenate biosynthesis(NFUNC_0030)
必須A
PAND
(NRULE_0115)
Aspartate 1-decarboxylaseEB105725_11_00630
PANB
(NRULE_0116)
3-methyl-2-oxobutanoate hydroxymethyltransferaseEB105725_11_00610
PANE
(NRULE_0117)
2-dehydropantoate 2-reductaseEB105725_34_00230
PANC
(NRULE_0118)
Pantothenate synthetaseEB105725_11_00620
Phenol degradation(NFUNC_0028)
必須B
PHEA1
(NRULE_0083)
Aromatic ring hydroxylaseEB105725_26_00210
C
PHEA2
(NRULE_0084)
Aromatic ring hydroxylaseEB105725_09_00100
任意 
FDR2
(NRULE_0057)
Ferredoxin reductaseEB105725_20_00560
 
FDR1
(NRULE_0032)
Oxygenase electron transfer componentEB105725_33_00340 EB105725_04_03030 EB105725_04_00050 EB105725_03_01080 EB105725_26_00430 EB105725_19_00570 EB105725_23_00430
 
FDX1
(NRULE_0034)
Putative Rieske-type ferredoxinEB105725_20_00500 EB105725_04_00070 EB105725_26_00460 EB105725_26_00440 EB105725_04_02040 EB105725_20_00520 EB105725_23_00450
 
FADR1
(NRULE_0101)
NADH-dependent flavin reductaseEB105725_26_00220 EB105725_03_00460 EB105725_01_00770
Riboflavin biosynthesis(NFUNC_0058)
必須A
RIBB
(NRULE_0200)
3,4-dihydroxy-2-butanone 4-phosphate synthaseEB105725_20_00160
RIBA
(NRULE_0201)
GTP cyclohydrolase-2EB105725_19_00220
RIBD
(NRULE_0202)
Riboflavin biosynthesis protein RibDEB105725_34_00330
RIBH
(NRULE_0203)
6,7-dimethyl-8-ribityllumazine synthaseEB105725_34_00320
RIBE
(NRULE_0204)
Riboflavin synthaseEB105725_05_01430
任意 
RIBF
(NRULE_0205)
Riboflavin biosynthesis protein RibFEB105725_11_01720
Trehalose biosynthesis (from NDP-glucose and glucose-6-phosphate)(NFUNC_0031)
必須A
TPS
(NRULE_0119)
Trehalose-phosphate synthaseEB105725_04_03540
TPP
(NRULE_0120)
Trehalose-6-phosphate phosphataseEB105725_04_03530
Uptake of osmoprotectant(NFUNC_0061)
必須A
OPUAC
(NRULE_0213)
Osmoprotectant ABC transporter substrate-binding proteinEB105725_31_00490
OPUAB
(NRULE_0214)
Osmoprotectant ABC transporter permease proteinEB105725_31_00480
OPUAA
(NRULE_0215)
Osmoprotectant ABC transporter ATP-binding proteinEB105725_31_00470
C
BCCT
(NRULE_0220)
BCCT family transporterEB105725_11_01520 EB105725_04_02030 EB105725_57_00030
D
PROP
(NRULE_0221)
Osmoprotectant transporterEB105725_04_02890
E
OPUE
(NRULE_0222)
Sodium/proline symporterEB105725_33_00460 EB105725_03_01960
Vitamin B6 biosynthesis (PdxA/PdxJ pathway)(NFUNC_0060)
必須A
EPD
(NRULE_0208)
D-erythrose-4-phosphate dehydrogenaseEB105725_20_00670
PDXB
(NRULE_0209)
Erythronate-4-phosphate dehydrogenaseEB105725_04_00250
SERC
(NRULE_0210)
Phosphoserine aminotransferaseEB105725_03_01360
PDXA
(NRULE_0211)
4-hydroxythreonine-4-phosphate dehydrogenaseEB105725_11_00730 EB105725_11_01380
PDXJ
(NRULE_0212)
Pyridoxine 5'-phosphate synthaseEB105725_12_01460

ゲノム配列情報

BioProject IDPRJDB16
ローカスタグEB105725
INSDC entriesBAHA00000000
ステータスWGS
解析状況High-Quality Draft
コンティグ数74
サイズ(bp) 4,032,904
遺伝子数 3,781
フィニッシングゴールNoncontiguous Finished
アセンブル方法Newbler v. 2.6
冗長度
シーケンス方法
  • 454 GS-FLX Titanium
  • Illumina HiSeq 1000
参考文献

データダウンロード

ゲノム塩基配列 CDS塩基配列 CDSアミノ酸変換配列 遺伝子/ORF リスト
FASTA
gz		 FASTA
gz		 FASTA
gz		 TSV
uncompressed
1.2 MB 1.1 MB 790.3 KB 330.3 KB