微生物 : Escherichia coli
微生物株情報
NBRC番号 | 12713 |
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学名 | Escherichia coli |
別名(シノニム) | 該当データなし |
由来 | IFO 12713 <- J. Lederberg, W3110 |
他保存機関番号 | |
他株番号 | |
参考文献 |
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推定保有機能 >>詳細
ゲノム配列情報
BioProject ID | PRJNA16351 |
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ローカスタグ | Y75 |
INSDC entries | AP009048 |
ステータス | Complete |
解析状況 | |
コンティグ数 | 1 |
サイズ(bp) | 4,646,332 |
遺伝子数 | 4,227 |
フィニッシングゴール | |
アセンブル方法 | |
冗長度 | |
シーケンス方法 |
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参考文献
- Nucleotide sequence of an insertion element, IS1. (Proc Natl Acad Sci U S A. 1978) PMID: 273224
- Nucleotide sequence of the operator-promoter region of the galactose operon of Escherichia coli. (Proc Natl Acad Sci U S A. 1977) PMID: 319453
- Nucleotide sequence of the L-arabinose regulatory region of Escherichia coli K12. (J Biol Chem. 1978) PMID: 357433
- Complementary sequences 1700 nucleotides apart form a ribonuclease III cleavage site in Escherichia coli ribosomal precursor RNA. (Proc Natl Acad Sci U S A. 1978) PMID: 358189
- DNA sequence of the araBAD promoter in Escherichia coli B/r. (Proc Natl Acad Sci U S A. 1978) PMID: 368797
- DNA sequence of the transposable element IS1. (Mol Gen Genet. 1979) PMID: 375010
- Cloning, sequence analysis, and overexpression of Escherichia coli folK, the gene coding for 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase. (J Bacteriol. 1992) PMID: 1325970
- The genes encoding the two carboxyltransferase subunits of Escherichia coli acetyl-CoA carboxylase. (J Biol Chem. 1992) PMID: 1355089
- The Crl protein activates cryptic genes for curli formation and fibronectin binding in Escherichia coli HB101. (Mol Microbiol. 1992) PMID: 1357528
- Comparison of the expression of the seven ribosomal RNA operons in Escherichia coli. (EMBO J. 1992) PMID: 1396599
- Identification and characterization of the smbA gene, a suppressor of the mukB null mutant of Escherichia coli. (J Bacteriol. 1992) PMID: 1447125
- Identification, cloning, and characterization of rcsF, a new regulator gene for exopolysaccharide synthesis that suppresses the division mutation ftsZ84 in Escherichia coli K-12. (J Bacteriol. 1992) PMID: 1459951
- Structural requirements for the processing of Escherichia coli 5 S ribosomal RNA by RNase E in vitro. (J Mol Biol. 1992) PMID: 1474579
- Systematic sequencing of the Escherichia coli genome: analysis of the 0-2.4 min region. (Nucleic Acids Res. 1992) PMID: 1630901
- Molecular cloning and DNA sequence of dniR, a gene affecting anaerobic expression of the Escherichia coli hexaheme nitrite reductase. (FEMS Microbiol Lett. 1991) PMID: 1663890
- Nucleotide sequence and functions of mrk determinants necessary for expression of type 3 fimbriae in Klebsiella pneumoniae. (J Bacteriol. 1991) PMID: 1670938
- Gene sequences and comparison of the fimbrial subunits representative of Bacteroides nodosus serotypes A to I: class I and class II strains. (Mol Microbiol. 1991) PMID: 1675419
- Identification and sequence of the drpA gene from Escherichia coli. (J Bacteriol. 1990) PMID: 1688424
- Peptidase D gene (pepD) of Escherichia coli K-12: nucleotide sequence, transcript mapping, and comparison with other peptidase genes. (J Bacteriol. 1990) PMID: 1695895
- ERIC sequences: a novel family of repetitive elements in the genomes of Escherichia coli, Salmonella typhimurium and other enterobacteria. (Mol Microbiol. 1991) PMID: 1713281
- Use of site-directed mutagenesis to enhance the epitope-shielding effect of covalent modification of proteins with polyethylene glycol. (Proc Natl Acad Sci U S A. 1991) PMID: 1714590
- The nucleotide sequence of a voltage-gated chloride channel from the electric organ of Torpedo californica. (Biochim Biophys Acta. 1991) PMID: 1721838
- Nucleotide and deduced amino acid sequence of the recA gene of Vibrio cholerae. (Nucleic Acids Res. 1992) PMID: 1741267
- Four types of IS1 with differences in nucleotide sequence reside in the Escherichia coli K-12 chromosome. (Gene. 1991) PMID: 1849492
- Nucleotide sequence of the fixABC region of Azorhizobium caulinodans ORS571: similarity of the fixB product with eukaryotic flavoproteins, characterization of fixX, and identification of nifW. (Mol Gen Genet. 1991) PMID: 1850088
- Identification of the promoter region of the ribosome-releasing factor cistron (frr). (J Bacteriol. 1991) PMID: 1860827
- Structural genes of glutamate 1-semialdehyde aminotransferase for porphyrin synthesis in a cyanobacterium and Escherichia coli. (Mol Gen Genet. 1991) PMID: 1900346
- Topographic analysis of the toxic Gef protein from Escherichia coli. (Mol Microbiol. 1991) PMID: 1943700
- The gef gene from Escherichia coli is regulated at the level of translation. (Mol Microbiol. 1991) PMID: 1943701
- Products of three accessory genes, pilB, pilC, and pilD, are required for biogenesis of Pseudomonas aeruginosa pili. (J Bacteriol. 1990) PMID: 1971619
- Cloning and nucleotide sequence of the firA gene and the firA200(Ts) allele from Escherichia coli. (J Bacteriol. 1991) PMID: 1987124
- The ompH gene of Yersinia enterocolitica: cloning, sequencing, expression, and comparison with known enterobacterial ompH sequences. (J Bacteriol. 1991) PMID: 1991717
- Requirement of the RNA helicase-like protein PRP22 for release of messenger RNA from spliceosomes. (Nature. 1991) PMID: 1992352
- Nucleotide sequence of the lsp-dapB interval in Escherichia coli. (Nucleic Acids Res. 1991) PMID: 2011499
- Nucleotide sequence and characterization of the sfs1 gene: sfs1 is involved in CRP*-dependent mal gene expression in Escherichia coli. (J Bacteriol. 1991) PMID: 2013578
- The cloning and DNA sequence of the gene for the glutathione-regulated potassium-efflux system KefC of Escherichia coli. (Mol Microbiol. 1991) PMID: 2046548
- Levanase operon of Bacillus subtilis includes a fructose-specific phosphotransferase system regulating the expression of the operon. (J Mol Biol. 1990) PMID: 2117666
- Aphidicolin inhibits DNA polymerase II of Escherichia coli, an alpha-like DNA polymerase. (Nucleic Acids Res. 1990) PMID: 2124684
- Structure and regulation of the gene for dGTP triphosphohydrolase from Escherichia coli. (Proc Natl Acad Sci U S A. 1990) PMID: 2157212
- Identification and characterization of a new Escherichia coli gene that is a dosage-dependent suppressor of a dnaK deletion mutation. (J Bacteriol. 1990) PMID: 2180916
- The nucleotide sequence of leuA from Salmonella typhimurium. (Nucleic Acids Res. 1990) PMID: 2181403
- Molecular analysis of the structural gene for yeast transaldolase. (Eur J Biochem. 1990) PMID: 2185015
- The nucleotide sequence of leuC from Salmonella typhimurium. (Nucleic Acids Res. 1990) PMID: 2190189
- Partition of tRNA synthetases into two classes based on mutually exclusive sets of sequence motifs. (Nature. 1990) PMID: 2203971
- Nucleotide sequence of Rhizobium loti nodI. (Nucleic Acids Res. 1990) PMID: 2251131
- Cloning and sequencing of a bile acid-inducible operon from Eubacterium sp. strain VPI 12708. (J Bacteriol. 1990) PMID: 2254270
- Nucleotide sequence and deletion analysis of the polB gene of Escherichia coli. (DNA Cell Biol. 1990) PMID: 2261080
- Molecular characterization of the nodulation gene, nodT, from two biovars of Rhizobium leguminosarum. (Mol Microbiol. 1990) PMID: 2338917
- Nucleotide sequence of a gene, hpt, for hypoxanthine phosphoribosyltransferase from Vibrio harveyi. (Nucleic Acids Res. 1990) PMID: 2388850
- Nucleotide sequences of the sfuA, sfuB, and sfuC genes of Serratia marcescens suggest a periplasmic-binding-protein-dependent iron transport mechanism. (J Bacteriol. 1990) PMID: 2404942
- Nucleotide sequence of the aroP gene encoding the general aromatic amino acid transport protein of Escherichia coli K-12: homology with yeast transport proteins. (Nucleic Acids Res. 1990) PMID: 2408019
- Structure of the DNA distal to the gene for ribosomal protein S20 in Escherichia coli K12: presence of a strong terminator and an IS1 element. (Nucleic Acids Res. 1986) PMID: 2429258
- Complementary DNA and derived amino acid sequence of the precursor of one of the three protein components of the inter-alpha-trypsin inhibitor complex. (FEBS Lett. 1988) PMID: 2450046
- Genetics and sequence analysis of the pcnB locus, an Escherichia coli gene involved in plasmid copy number control. (J Bacteriol. 1989) PMID: 2537812
- IS421, a new insertion sequence in Escherichia coli. (FEBS Lett. 1989) PMID: 2542093
- Accurate mapping of the Escherichia coli pepD gene by sequence analysis of its 5' flanking region. (Mol Gen Genet. 1989) PMID: 2651887
- Spermidine biosynthesis in Escherichia coli: promoter and termination regions of the speED operon. (J Bacteriol. 1989) PMID: 2666401
- Overlap between pdxA and ksgA in the complex pdxA-ksgA-apaG-apaH operon of Escherichia coli K-12. (J Bacteriol. 1989) PMID: 2670894
- Molecular cloning and expression of ribosome releasing factor. (J Biol Chem. 1989) PMID: 2684966
- Signalling proteins in enterobacterial AmpC beta-lactamase regulation. (Mol Microbiol. 1989) PMID: 2691840
- Characterization of a leuA gene and an ARS element from Mucor circinelloides. (Gene. 1989) PMID: 2693214
- Molecular cloning and nucleotide sequence of cDNAs encoding the precursors of rat long chain acyl-coenzyme A, short chain acyl-coenzyme A, and isovaleryl-coenzyme A dehydrogenases. Sequence homology of four enzymes of the acyl-CoA dehydrogenase family. (J Biol Chem. 1989) PMID: 2777793
- Molecular cloning and sequence analysis of the cDNA for rat mitochondrial enoyl-CoA hydratase. Structural and evolutionary relationships linked to the bifunctional enzyme of the peroxisomal beta-oxidation system. (Eur J Biochem. 1989) PMID: 2806264
- Nucleotide sequence of the Escherichia coli gene for lipid A disaccharide synthase. (J Bacteriol. 1987) PMID: 2824445
- Sequencing of the gene ant which affects the Na+/H+ antiporter activity in Escherichia coli. (J Biol Chem. 1988) PMID: 2839489
- Human dioxin-inducible cytosolic NAD(P)H:menadione oxidoreductase. cDNA sequence and localization of gene to chromosome 16. (J Biol Chem. 1988) PMID: 2843525
- Nucleotide sequence of the gene encoding the GMP reductase of Escherichia coli K12. (Biochem J. 1988) PMID: 2904262
- Characterization of the ileS-lsp operon in Escherichia coli. Identification of an open reading frame upstream of the ileS gene and potential promoter(s) for the ileS-lsp operon. (J Biol Chem. 1985) PMID: 2985604
- Transcriptional organization of the convergent overlapping dnaQ-rnh genes of Escherichia coli. (J Biol Chem. 1985) PMID: 2987244
- Characterization of the 3' end of the leucine operon of Salmonella typhimurium. (Mol Gen Genet. 1985) PMID: 2993799
- Molecular cloning and sequencing of the gene for CDP-diglyceride synthetase of Escherichia coli. (J Biol Chem. 1985) PMID: 2995358
- Structural analysis of a new GC-specific insertion element IS186. (FEBS Lett. 1985) PMID: 2996940
- Nucleotide sequence of the Escherichia coli dnaJ gene and purification of the gene product. (J Biol Chem. 1986) PMID: 3003084
- Glutamyl-tRNA synthetase of Escherichia coli. Isolation and primary structure of the gltX gene and homology with other aminoacyl-tRNA synthetases. (J Biol Chem. 1986) PMID: 3015933
- Cloning and characterization of a cDNA encoding the rat brain glucose-transporter protein. (Proc Natl Acad Sci U S A. 1986) PMID: 3016720
- Iron hydroxamate transport of Escherichia coli: nucleotide sequence of the fhuB gene and identification of the protein. (Mol Gen Genet. 1986) PMID: 3020380
- DNA sequence and coding properties of mutD(dnaQ) a dominant Escherichia coli mutator gene. (J Mol Biol. 1986) PMID: 3023634
- Transcription control of the aroP gene in Escherichia coli K-12: analysis of operator mutants. (J Bacteriol. 1987) PMID: 3025182
- Processing of the initiation methionine from proteins: properties of the Escherichia coli methionine aminopeptidase and its gene structure. (J Bacteriol. 1987) PMID: 3027045
- Organization and partial sequence of a DNA region of the Rhizobium leguminosarum symbiotic plasmid pRL6JI containing the genes fixABC, nifA, nifB and a novel open reading frame. (Nucleic Acids Res. 1987) PMID: 3029674
- The gene for Escherichia coli diadenosine tetraphosphatase is located immediately clockwise to folA and forms an operon with ksgA. (Mol Gen Genet. 1986) PMID: 3031429
- The hisT-purF region of the Escherichia coli K-12 chromosome. Identification of additional genes of the hisT and purF operons. (J Biol Chem. 1987) PMID: 3040734
- Characterization of the cyn operon in Escherichia coli K12. (J Biol Chem. 1988) PMID: 3049588
- Sequence analysis and regulation of the htrA gene of Escherichia coli: a sigma 32-independent mechanism of heat-inducible transcription. (Nucleic Acids Res. 1988) PMID: 3057437
- Protein fusions of beta-galactosidase to the ferrichrome-iron receptor of Escherichia coli K-12. (J Bacteriol. 1986) PMID: 3079747
- Primary structures and catalytic properties of isoenzymes encoded by the two 4-coumarate: CoA ligase genes in parsley. (Eur J Biochem. 1988) PMID: 3169018
- First committed step of lipid A biosynthesis in Escherichia coli: sequence of the lpxA gene. (J Bacteriol. 1988) PMID: 3277952
- A newly discovered tRNA(1Asp) gene (aspV) of Escherichia coli K12. (Mol Gen Genet. 1987) PMID: 3295485
- fhuC and fhuD genes for iron (III)-ferrichrome transport into Escherichia coli K-12. (J Bacteriol. 1987) PMID: 3301821
- Sequence analysis of the Escherichia coli dnaE gene. (J Bacteriol. 1987) PMID: 3316192
- The speEspeD operon of Escherichia coli. Formation and processing of a proenzyme form of S-adenosylmethionine decarboxylase. (J Biol Chem. 1987) PMID: 3316212
- Nucleotide sequence and organization of copper resistance genes from Pseudomonas syringae pv. tomato. (J Bacteriol. 1988) PMID: 3372485
- Structure and function of dnaQ and mutD mutators of Escherichia coli. (Mol Gen Genet. 1986) PMID: 3540531
- DNA base changes and alkylation following in vivo exposure of Escherichia coli to N-methyl-N-nitrosourea or N-ethyl-N-nitrosourea. (Proc Natl Acad Sci U S A. 1987) PMID: 3540961
- The organization of the araBAD operon of Escherichia coli. (Gene. 1986) PMID: 3549454
- The nucleotide sequences of the ponA and ponB genes encoding penicillin-binding protein 1A and 1B of Escherichia coli K12. (Eur J Biochem. 1985) PMID: 3882429
- Consensus sequence for Escherichia coli heat shock gene promoters. (Proc Natl Acad Sci U S A. 1985) PMID: 3887408
- Repetitive extragenic palindromic (REP) sequences in the Escherichia coli gdhA gene. (Gene. 1985) PMID: 3902576
- Analysis of the Escherichia coli proBA locus by DNA and protein sequencing. (Nucleic Acids Res. 1984) PMID: 6089111
- Regulation of expression and nucleotide sequence of the Escherichia coli dapD gene. (J Biol Chem. 1984) PMID: 6094577
- Nucleotide sequence and expression of the Escherichia coli dapB gene. (J Biol Chem. 1984) PMID: 6094578
- Factors governing the expression of a bacterial gene in mammalian cells. (Mol Cell Biol. 1981) PMID: 6100966
- Nucleotide sequence of the E coli gene coding for dihydrofolate reductase. (Nucleic Acids Res. 1980) PMID: 6159575
- The Escherichia coli L-arabinose operon: binding sites of the regulatory proteins and a mechanism of positive and negative regulation. (Proc Natl Acad Sci U S A. 1980) PMID: 6251457
- Nucleotide sequence of the thrB gene of E. coli, and its two adjacent regions; the thrAB and thrBC junctions. (Nucleic Acids Res. 1981) PMID: 6259626
- Mechanism of araC autoregulation and the domains of two overlapping promoters, Pc and PBAD, in the L-arabinose regulatory region of Escherichia coli. (Proc Natl Acad Sci U S A. 1981) PMID: 6262769
- Nucleotide sequence of the gene for ribosomal protein S20 and its flanking regions. (J Biol Chem. 1981) PMID: 6267039
- Organization and nucleotide sequence of a new ribosomal operon in Escherichia coli containing the genes for ribosomal protein S2 and elongation factor Ts. (Nucleic Acids Res. 1981) PMID: 6272196
- Is the amino acid but not the nucleotide sequence of the Escherichia coli araC gene conserved? (J Mol Biol. 1982) PMID: 6283093
- Sequence of the malK gene in E.coli K12. (Nucleic Acids Res. 1982) PMID: 6296778
- Low levels of RNase H activity in Escherichia coli FB2 rnh result from a single-base change in the structural gene of RNase H. (J Bacteriol. 1983) PMID: 6302075
- Nucleotide sequence of thrC and of the transcription termination region of the threonine operon in Escherichia coli K12. (Nucleic Acids Res. 1983) PMID: 6316258
- Major heat shock gene of Drosophila and the Escherichia coli heat-inducible dnaK gene are homologous. (Proc Natl Acad Sci U S A. 1984) PMID: 6322174
- Nucleotide sequence of the xanthine guanine phosphoribosyl transferase gene of E. coli. (Nucleic Acids Res. 1983) PMID: 6324102
- Nucleotide sequence of the Escherichia coli xanthine-guanine phosphoribosyl transferase gene. (Nucleic Acids Res. 1983) PMID: 6324103
- Complete nucleotide sequence of phoE, the structural gene for the phosphate limitation inducible outer membrane pore protein of Escherichia coli K12. (J Mol Biol. 1983) PMID: 6341601
- The pyruvate dehydrogenase complex of Escherichia coli K12. Nucleotide sequence encoding the pyruvate dehydrogenase component. (Eur J Biochem. 1983) PMID: 6343085
- The pyruvate dehydrogenase complex of Escherichia coli K12. Nucleotide sequence encoding the dihydrolipoamide acetyltransferase component. (Eur J Biochem. 1983) PMID: 6345153
- Nucleotide sequence of the lipoamide dehydrogenase gene of Escherichia coli K12. (Eur J Biochem. 1983) PMID: 6352260
- Nucleotide sequence of the Escherichia coli prolipoprotein signal peptidase (lsp) gene. (Proc Natl Acad Sci U S A. 1984) PMID: 6374664
- Multiple regulatory signals in the control region of the Escherichia coli carAB operon. (Proc Natl Acad Sci U S A. 1984) PMID: 6377309
- Nucleotide sequence and analysis of deletion mutants of the Escherichia coli gpt gene in plasmid pSV2 gpt. (Gene. 1984) PMID: 6396164
- Structural and functional organization of the gpt gene region of Escherichia coli. (Gene. 1984) PMID: 6397401
- Nucleotide sequence of the thrA gene of Escherichia coli. (Proc Natl Acad Sci U S A. 1980) PMID: 7003595
- DNA sequence of the araC regulatory gene from Escherichia coli B/r. (Nucleic Acids Res. 1980) PMID: 7008027
- Purified lexA protein is a repressor of the recA and lexA genes. (Proc Natl Acad Sci U S A. 1981) PMID: 7027255
- Cloning and organization of the abc and mdl genes of Escherichia coli: relationship to eukaryotic multidrug resistance. (Gene. 1993) PMID: 7904973
- Ribosome recycling factor (ribosome releasing factor) is essential for bacterial growth. (Proc Natl Acad Sci U S A. 1994) PMID: 8183897
- Systematic sequencing of the Escherichia coli genome: analysis of the 2.4-4.1 min (110,917-193,643 bp) region. (Nucleic Acids Res. 1994) PMID: 8202364
- Rhs elements of Escherichia coli K-12: complex composites of shared and unique components that have different evolutionary histories. (J Bacteriol. 1993) PMID: 8387990
- The genes of the glutamine synthetase adenylylation cascade are not regulated by nitrogen in Escherichia coli. (Mol Microbiol. 1993) PMID: 8412694
- Characterization of the gcd gene from Escherichia coli K-12 W3110 and regulation of its expression. (J Bacteriol. 1993) PMID: 8419307
- A 718-kb DNA sequence of the Escherichia coli K-12 genome corresponding to the 12.7-28.0 min region on the linkage map. (DNA Res. 1996) PMID: 8905232
- The 2'-5' RNA ligase of Escherichia coli. Purification, cloning, and genomic disruption. (J Biol Chem. 1996) PMID: 8940112
- A 570-kb DNA sequence of the Escherichia coli K-12 genome corresponding to the 28.0-40.1 min region on the linkage map. (DNA Res. 1996) PMID: 9097039
- A 460-kb DNA sequence of the Escherichia coli K-12 genome corresponding to the 40.1-50.0 min region on the linkage map. (DNA Res. 1996) PMID: 9097040
- Construction of a contiguous 874-kb sequence of the Escherichia coli -K12 genome corresponding to 50.0-68.8 min on the linkage map and analysis of its sequence features. (DNA Res. 1997) PMID: 9205837
- Escherichia coli K-12: a cooperatively developed annotation snapshot--2005. (Nucleic Acids Res. 2006) PMID: 16397293
- Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110. (Mol Syst Biol. 2006) PMID: 16738553
データダウンロード
ゲノム塩基配列 | CDS塩基配列 | CDSアミノ酸変換配列 | 遺伝子/ORF リスト |
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FASTA gz |
FASTA gz |
FASTA gz |
TSV uncompressed |
1.4 MB | 1.3 MB | 867.8 KB | 374.4 KB |