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微生物 : Escherichia coli

微生物株情報

NBRC番号 13500
学名 Escherichia coli
別名（シノニム） 該当データなし
由来 IFO 13500 <- ATCC 9637 <- S.A. Waksman, W
他保存機関番号 ATCC 9637=NCIB 8666
他株番号
参考文献
21208457
The genome sequence of E. coli W (ATCC 9637): comparative genome analysis and an improved genome-scale reconstruction of E. coli. (BMC Genomics. 2011)

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タイプパターン 構成遺伝子 該当CDS
Acid resistance (by GABA antiporter)(NFUNC_0071)
必須A
GAD
(NRULE_0231)
Glutamate decarboxylaseWFL_18460 WFL_07935
GADC
(NRULE_0234)
Glutamate/gamma-aminobutyrate antiporterWFL_07930
Alanine racemization(NFUNC_0063)
必須A
ALR
(NRULE_0228)
Alanine racemaseWFL_21485 WFL_06245
Anthranilate biosynthesis(NFUNC_0038)
必須A
GLAT
(NRULE_0142)
Glutamine amidotransferaseWFL_06605 WFL_17660
TRPE
(NRULE_0143)
Anthranilate synthase component IWFL_06610
Aromatic azo compounds degradation(NFUNC_0073)
必須A
AZOR
(NRULE_0236)
FMN-dependent NADH-azoreductaseWFL_07530
Arsenical resistance(NFUNC_0004)
必須A
ARSB1
(NRULE_0015)
Arsenical pump membrane proteinWFL_18375
ARSC1
(NRULE_0017)
Arsenate reductaseWFL_13315 WFL_18380
Bacitracin resistance(NFUNC_0022)
必須A
UPPP
(NRULE_0097)
Undecaprenyl-diphosphataseWFL_16240
Beta-lactam antibiotic resistance(NFUNC_0033)
必須C
BLAC
(NRULE_0124)
Beta-lactamase class CWFL_21965
Betaine biosynthesis (from choline)(NFUNC_0049)
必須A
BETA
(NRULE_0175)
Choline dehydrogenaseWFL_01890
Biotin biosynthesis(NFUNC_0051)
必須A
BIOF
(NRULE_0182)
8-amino-7-oxononanoate synthaseWFL_04030
BIOA
(NRULE_0183)
Adenosylmethionine-8-amino-7-oxononanoate aminotransferaseWFL_04020
BIOD
(NRULE_0184)
ATP-dependent dethiobiotin synthetase BioDWFL_04040 WFL_08610
BIOB
(NRULE_0185)
Biotin synthaseWFL_04025
Cephalosporin resistance(NFUNC_0048)
必須A
BLAC
(NRULE_0124)
Beta-lactamase class CWFL_21965
Dihydroxy aromatic compounds degradation (via meta-cleavage pathway)(NFUNC_0011)
必須A
EDIO
(NRULE_0058)
extradiol dioxygenaseWFL_02095 WFL_16155 WFL_22950
METAH
(NRULE_0059)
meta-cleavage compound hydrolaseWFL_02100
HPDH
(NRULE_0063)
2-hydroxypent-2,4-dienoate hydrataseWFL_02105
HOA
(NRULE_0064)
4-hydroxy-2-oxovalerate aldolaseWFL_02115
ACDH
(NRULE_0065)
Acetaldehyde dehydrogenaseWFL_02110
Folate biosynthesis(NFUNC_0044)
必須A
GLAT
(NRULE_0142)
Glutamine amidotransferaseWFL_06605 WFL_17660
DHPS
(NRULE_0144)
Dihydropteroate synthaseWFL_16870
FOLM
(NRULE_0146)
Dihydrofolate reductase FolMWFL_08675
FOLB
(NRULE_0158)
Dihydroneopterin aldolaseWFL_12200 WFL_16245
FOLK
(NRULE_0159)
2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinaseWFL_00685
FOLC
(NRULE_0160)
Bifunctional protein FolCWFL_12260
PABB
(NRULE_0161)
Para-aminobenzoate synthase component IWFL_09735
PABC
(NRULE_0162)
Aminodeoxychorismate lyaseWFL_05880
B
GLAT
(NRULE_0142)
Glutamine amidotransferaseWFL_06605 WFL_17660
DHPS
(NRULE_0144)
Dihydropteroate synthaseWFL_16870
FOLA
(NRULE_0147)
Dihydrofolate reductaseWFL_00240
FOLB
(NRULE_0158)
Dihydroneopterin aldolaseWFL_16245 WFL_12200
FOLK
(NRULE_0159)
2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinaseWFL_00685
FOLC
(NRULE_0160)
Bifunctional protein FolCWFL_12260
PABB
(NRULE_0161)
Para-aminobenzoate synthase component IWFL_09735
PABC
(NRULE_0162)
Aminodeoxychorismate lyaseWFL_05880
GABA biosynthesis(NFUNC_0066)
必須A
GAD
(NRULE_0231)
Glutamate decarboxylaseWFL_07935 WFL_18460
4-hydroxyphenylacetate degradation(NFUNC_0068)
必須A
HPAB1
(NRULE_0085)
4-hydroxyphenylacetate 3-monooxygenase oxygenase componentWFL_22920
HPAC
(NRULE_0102)
4-hydroxyphenylacetate 3-monooxygenase reductase componentWFL_22915
HPAD1
(NRULE_0193)
Homoprotocatechuate 2,3-dioxygenaseWFL_22950
HPAE
(NRULE_0195)
5-carboxymethyl-2-hydroxymuconic-semialdehyde dehydrogenaseWFL_22955
HPAF
(NRULE_0196)
5-carboxymethyl-2-hydroxymuconate Delta-isomeraseWFL_22945
HPAG
(NRULE_0197)
5-oxopent-3-ene-1,2,5-tricarboxylate decarboxylase/2-hydroxyhepta-2,4-diene-1,7-dioate Delta-isomeraseWFL_22960
HPAH
(NRULE_0198)
2-oxo-hepta-3-ene-1,7-dioate hydrataseWFL_22940
HPAI
(NRULE_0199)
2,4-dihydroxyhept-2-ene-1,7-dioate aldolaseWFL_22935
C
HPAB1
(NRULE_0085)
4-hydroxyphenylacetate 3-monooxygenase oxygenase componentWFL_22920
FADR1
(NRULE_0101)
NADH-dependent flavin reductaseWFL_07780 WFL_05450 WFL_22915
HPAD1
(NRULE_0193)
Homoprotocatechuate 2,3-dioxygenaseWFL_22950
HPAE
(NRULE_0195)
5-carboxymethyl-2-hydroxymuconic-semialdehyde dehydrogenaseWFL_22955
HPAF
(NRULE_0196)
5-carboxymethyl-2-hydroxymuconate Delta-isomeraseWFL_22945
HPAG
(NRULE_0197)
5-oxopent-3-ene-1,2,5-tricarboxylate decarboxylase/2-hydroxyhepta-2,4-diene-1,7-dioate Delta-isomeraseWFL_22960
HPAH
(NRULE_0198)
2-oxo-hepta-3-ene-1,7-dioate hydrataseWFL_22940
HPAI
(NRULE_0199)
2,4-dihydroxyhept-2-ene-1,7-dioate aldolaseWFL_22935
Macrolide antibiotic resistance(NFUNC_0045)
必須B
RLMA
(NRULE_0165)
23S rRNA (guanine-N(1))-methyltransferaseWFL_09785
C
MACA
(NRULE_0166)
Macrolide-specific efflux protein MacAWFL_04805
MACB
(NRULE_0167)
Macrolide export ATP-binding/permease protein MacBWFL_04810
Metal-binding protein(NFUNC_0105)
必須A
MOP
(NRULE_0322)
Putative molybdenum-binding proteinWFL_03975 WFL_03955 WFL_06895
B
MODE
(NRULE_0323)
Putative molybdate-dependent transcriptional regulatorWFL_03955
C
MODA
(NRULE_0324)
Molybdate ABC transporter substrate-binding proteinWFL_03965 WFL_21385 WFL_12990 WFL_20815
E
CUER
(NRULE_0328)
Copper-responsive transcriptional regulator CueRWFL_02775
F
SOXR
(NRULE_0329)
Redox-sensitive transcriptional activator SoxRWFL_21535
G
ZNTR
(NRULE_0330)
Zinc-responsive transcriptional regulator ZntRWFL_17385
H
NIKR
(NRULE_0331)
Nickel-responsive transcriptional regulator NikRWFL_18280
I
ISCR
(NRULE_0332)
Rrf2 family transcriptional regulator IscRWFL_13500
Molybdate transport (ABC transporter)(NFUNC_0097)
必須A
MODA
(NRULE_0324)
Molybdate ABC transporter substrate-binding proteinWFL_20815 WFL_21385 WFL_12990 WFL_03965
任意 
MODE
(NRULE_0323)
Putative molybdate-dependent transcriptional regulatorWFL_03955
 
MODB
(NRULE_0325)
Molybdate ABC transporter permease proteinWFL_03970
 
MODC
(NRULE_0326)
Molybdate ABC transporter ATP-binding proteinWFL_03975
(R)-pantothenate biosynthesis(NFUNC_0030)
必須A
PAND
(NRULE_0115)
Aspartate 1-decarboxylaseWFL_00630
PANB
(NRULE_0116)
3-methyl-2-oxobutanoate hydroxymethyltransferaseWFL_00645
PANE
(NRULE_0117)
2-dehydropantoate 2-reductaseWFL_02445
PANC
(NRULE_0118)
Pantothenate synthetaseWFL_00640
Phenol degradation(NFUNC_0028)
必須B
PHEA1
(NRULE_0083)
Aromatic ring hydroxylaseWFL_22920
C
PHEA2
(NRULE_0084)
Aromatic ring hydroxylaseWFL_02090
任意 
FDR2
(NRULE_0057)
Ferredoxin reductaseWFL_13555
 
FDR1
(NRULE_0032)
Oxygenase electron transfer componentWFL_04775 WFL_07455 WFL_09690
 
FDX1
(NRULE_0034)
Putative Rieske-type ferredoxinWFL_13535 WFL_09685 WFL_13545
 
FADR1
(NRULE_0101)
NADH-dependent flavin reductaseWFL_07780 WFL_22915 WFL_05450
Phytic acid hydrolysis(NFUNC_0085)
必須B
APPA
(NRULE_0259)
Periplasmic AppA proteinWFL_05315
Polymyxin resistance(NFUNC_0036)
必須A
ARNA
(NRULE_0132)
Bifunctional polymyxin resistance protein ArnAWFL_11970
ARNB
(NRULE_0133)
UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferaseWFL_11960
ARNC
(NRULE_0134)
Undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferaseWFL_11965
ARND
(NRULE_0135)
Probable 4-deoxy-4-formamido-L-arabinose-phosphoundecaprenol deformylase ArnDWFL_11975
ARNE
(NRULE_0136)
Probable 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnEWFL_11985
ARNF
(NRULE_0137)
Probable 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnFWFL_11990
ARNT
(NRULE_0138)
Undecaprenyl phosphate-alpha-4-amino-4-deoxy-L-arabinose arabinosyl transferaseWFL_11980
Riboflavin biosynthesis(NFUNC_0058)
必須A
RIBB
(NRULE_0200)
3,4-dihydroxy-2-butanone 4-phosphate synthaseWFL_16170
RIBA
(NRULE_0201)
GTP cyclohydrolase-2WFL_06680
RIBD
(NRULE_0202)
Riboflavin biosynthesis protein RibDWFL_02390
RIBH
(NRULE_0203)
6,7-dimethyl-8-ribityllumazine synthaseWFL_02395
RIBE
(NRULE_0204)
Riboflavin synthaseWFL_08970
任意 
RIBF
(NRULE_0205)
Riboflavin biosynthesis protein RibFWFL_00125
Trehalose biosynthesis (from NDP-glucose and glucose-6-phosphate)(NFUNC_0031)
必須A
TPS
(NRULE_0119)
Trehalose-phosphate synthaseWFL_10160
TPP
(NRULE_0120)
Trehalose-6-phosphate phosphataseWFL_10165
Uptake of osmoprotectant(NFUNC_0061)
必須A
OPUAC
(NRULE_0213)
Osmoprotectant ABC transporter substrate-binding proteinWFL_14055
OPUAB
(NRULE_0214)
Osmoprotectant ABC transporter permease proteinWFL_14050
OPUAA
(NRULE_0215)
Osmoprotectant ABC transporter ATP-binding proteinWFL_14045
C
BCCT
(NRULE_0220)
BCCT family transporterWFL_09680 WFL_00200 WFL_01905
D
PROP
(NRULE_0221)
Osmoprotectant transporterWFL_21750
E
OPUE
(NRULE_0222)
Sodium/proline symporterWFL_05495
Vitamin B6 biosynthesis (PdxA/PdxJ pathway)(NFUNC_0060)
必須A
EPD
(NRULE_0208)
D-erythrose-4-phosphate dehydrogenaseWFL_15535
PDXB
(NRULE_0209)
Erythronate-4-phosphate dehydrogenaseWFL_12285
SERC
(NRULE_0210)
Phosphoserine aminotransferaseWFL_04945
PDXA
(NRULE_0211)
4-hydroxythreonine-4-phosphate dehydrogenaseWFL_00260
PDXJ
(NRULE_0212)
Pyridoxine 5'-phosphate synthaseWFL_13665

ゲノム配列情報

BioProject IDPRJNA62301
ローカスタグWFL
INSDC entriesCP002967
ステータスComplete
解析状況
コンティグ数3
サイズ(bp) 5,005,347
遺伝子数 4,731
フィニッシングゴール
アセンブル方法
冗長度
シーケンス方法
参考文献
  • Optical mapping and sequencing of the Escherichia coli KO11 genome reveal extensive chromosomal rearrangements, and multiple tandem copies of the Zymomonas mobilis pdc and adhB genes. (J Ind Microbiol Biotechnol. 2012) PMID: 22075923

データダウンロード

ゲノム塩基配列 CDS塩基配列 CDSアミノ酸変換配列 遺伝子/ORF リスト
FASTA
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