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Microbe : Enterobacter cloacae subsp. cloacae

Microbe Description

NBRC No. 13535
Scientific name Enterobacter cloacae subsp. cloacae
Synonymous name Not assigned
History IFO 13535 <- ATCC 13047 <- CDC 442-68
Other culture collection No. ATCC 13047=NCDC 279-56=NCDC 442-68=NCTC 10005=CCUG 28448=CCUG 29301=CCUG 6323=CIP 60.85=DSM 30054=HAMBI 1295=HAMBI 96=JCM 1232=LMG 2783
Other No. CDC 442-68=WDCM 00083
Reference
Not assigned

Functional Potential >>Details

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TypePattern Component Gene CDS
Alanine racemization(NFUNC_0063)
RequireA
ALR
(NRULE_0228)
Alanine racemaseECL_01514 ECL_00311
Anthranilate biosynthesis(NFUNC_0038)
RequireA
GLAT
(NRULE_0142)
Glutamine amidotransferaseECL_04737 ECL_01728
TRPE
(NRULE_0143)
Anthranilate synthase component IECL_01729
Aromatic azo compounds degradation(NFUNC_0073)
RequireA
AZOR
(NRULE_0236)
FMN-dependent NADH-azoreductaseECL_02091
Arsenical resistance(NFUNC_0004)
RequireA
ARSB1
(NRULE_0015)
Arsenical pump membrane proteinECL_00466 ECL_02870 ECL_A099
ARSC1
(NRULE_0017)
Arsenate reductaseECL_00465 ECL_02871 ECL_03781 ECL_A100
B
ARSB1
(NRULE_0015)
Arsenical pump membrane proteinECL_00466 ECL_02870 ECL_A099
ARSC2
(NRULE_0018)
Arsenate reductaseECL_00469 ECL_00464 ECL_03833
D
ARSB2
(NRULE_0016)
Arsenite resistance protein ArsBECL_03834
ARSC1
(NRULE_0017)
Arsenate reductaseECL_A100 ECL_00465 ECL_02871 ECL_03781
E
ARSB2
(NRULE_0016)
Arsenite resistance protein ArsBECL_03834
ARSC2
(NRULE_0018)
Arsenate reductaseECL_00464 ECL_03833 ECL_00469
Participant 
ARSA
(NRULE_0014)
Arsenical pump-driving ATPaseECL_A098 ECL_A102 ECL_00467
 
ARSD
(NRULE_0020)
Arsenical resistance operon trans-acting repressor ArsDECL_00468 ECL_A103 ECL_A097
 
ARSH
(NRULE_0021)
ArsH proteinECL_03832 ECL_A105 ECL_00459
Bacitracin resistance(NFUNC_0022)
RequireA
UPPP
(NRULE_0097)
Undecaprenyl-diphosphataseECL_04383
Beta-lactam antibiotic resistance(NFUNC_0033)
RequireC
BLAC
(NRULE_0124)
Beta-lactamase class CECL_00553
Betaine biosynthesis (from choline)(NFUNC_0049)
RequireA
BETA
(NRULE_0175)
Choline dehydrogenaseECL_03123
Biotin biosynthesis(NFUNC_0051)
RequireA
BIOF
(NRULE_0182)
8-amino-7-oxononanoate synthaseECL_02960
BIOA
(NRULE_0183)
Adenosylmethionine-8-amino-7-oxononanoate aminotransferaseECL_02962
BIOD
(NRULE_0184)
ATP-dependent dethiobiotin synthetase BioDECL_02958 ECL_02219
BIOB
(NRULE_0185)
Biotin synthaseECL_02961
Cephalosporin resistance(NFUNC_0048)
RequireA
BLAC
(NRULE_0124)
Beta-lactamase class CECL_00553
Folate biosynthesis(NFUNC_0044)
RequireA
GLAT
(NRULE_0142)
Glutamine amidotransferaseECL_01728 ECL_04737
DHPS
(NRULE_0144)
Dihydropteroate synthaseECL_03814 ECL_04556
FOLM
(NRULE_0146)
Dihydrofolate reductase FolMECL_02267
FOLB
(NRULE_0158)
Dihydroneopterin aldolaseECL_03652 ECL_04384
FOLK
(NRULE_0159)
2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinaseECL_00946
FOLC
(NRULE_0160)
Bifunctional protein FolCECL_03664
PABB
(NRULE_0161)
Para-aminobenzoate synthase component IECL_01492
PABC
(NRULE_0162)
Aminodeoxychorismate lyaseECL_02540
B
GLAT
(NRULE_0142)
Glutamine amidotransferaseECL_01728 ECL_04737
DHPS
(NRULE_0144)
Dihydropteroate synthaseECL_04556 ECL_03814
FOLA
(NRULE_0147)
Dihydrofolate reductaseECL_00846
FOLB
(NRULE_0158)
Dihydroneopterin aldolaseECL_03652 ECL_04384
FOLK
(NRULE_0159)
2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinaseECL_00946
FOLC
(NRULE_0160)
Bifunctional protein FolCECL_03664
PABB
(NRULE_0161)
Para-aminobenzoate synthase component IECL_01492
PABC
(NRULE_0162)
Aminodeoxychorismate lyaseECL_02540
Fosfomycin resistance(NFUNC_0023)
RequireA
FOSA
(NRULE_0098)
Glutathione transferase FosAECL_00705
Macrolide antibiotic resistance(NFUNC_0045)
RequireB
RLMA
(NRULE_0165)
23S rRNA (guanine-N(1))-methyltransferaseECL_01482
C
MACA
(NRULE_0166)
Macrolide-specific efflux protein MacAECL_02771
MACB
(NRULE_0167)
Macrolide export ATP-binding/permease protein MacBECL_00381 ECL_02770
Mercury resistance(NFUNC_0005)
RequireA
MERA
(NRULE_0008)
Mercuric reductaseECL_A232 ECL_03824 ECL_A045
Metal-binding protein(NFUNC_0105)
RequireA
MOP
(NRULE_0322)
Putative molybdenum-binding proteinECL_02976 ECL_02972 ECL_02648 ECL_04172
B
MODE
(NRULE_0323)
Putative molybdate-dependent transcriptional regulatorECL_02976
C
MODA
(NRULE_0324)
Molybdate ABC transporter substrate-binding proteinECL_05060 ECL_02974 ECL_03176 ECL_03257 ECL_01119 ECL_03753
E
CUER
(NRULE_0328)
Copper-responsive transcriptional regulator CueRECL_01254
F
SOXR
(NRULE_0329)
Redox-sensitive transcriptional activator SoxRECL_00321
G
ZNTR
(NRULE_0330)
Zinc-responsive transcriptional regulator ZntRECL_04669
I
ISCR
(NRULE_0332)
Rrf2 family transcriptional regulator IscRECL_03880
Molybdate transport (ABC transporter)(NFUNC_0097)
RequireA
MODA
(NRULE_0324)
Molybdate ABC transporter substrate-binding proteinECL_03176 ECL_05060 ECL_03753 ECL_03257 ECL_02974 ECL_01119
Participant 
MODE
(NRULE_0323)
Putative molybdate-dependent transcriptional regulatorECL_02976
 
MODB
(NRULE_0325)
Molybdate ABC transporter permease proteinECL_02973
 
MODC
(NRULE_0326)
Molybdate ABC transporter ATP-binding proteinECL_02972
(R)-pantothenate biosynthesis(NFUNC_0030)
RequireA
PAND
(NRULE_0115)
Aspartate 1-decarboxylaseECL_00943
PANB
(NRULE_0116)
3-methyl-2-oxobutanoate hydroxymethyltransferaseECL_00945
PANE
(NRULE_0117)
2-dehydropantoate 2-reductaseECL_03147 ECL_01182
PANC
(NRULE_0118)
Pantothenate synthetaseECL_00944
Phenol degradation(NFUNC_0028)
RequireB
PHEA1
(NRULE_0083)
Aromatic ring hydroxylaseECL_00750
Participant 
FDR1
(NRULE_0032)
Oxygenase electron transfer componentECL_02779 ECL_01062 ECL_02149
 
FDX1
(NRULE_0034)
Putative Rieske-type ferredoxinECL_02669 ECL_04264 ECL_04266
 
FADR1
(NRULE_0101)
NADH-dependent flavin reductaseECL_02627 ECL_03076 ECL_01887 ECL_00749
Polymyxin resistance(NFUNC_0036)
RequireA
ARNA
(NRULE_0132)
Bifunctional polymyxin resistance protein ArnAECL_04861
ARNB
(NRULE_0133)
UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferaseECL_04863
ARNC
(NRULE_0134)
Undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferaseECL_04862
ARND
(NRULE_0135)
Probable 4-deoxy-4-formamido-L-arabinose-phosphoundecaprenol deformylase ArnDECL_04860
ARNE
(NRULE_0136)
Probable 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnEECL_04858
ARNF
(NRULE_0137)
Probable 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnFECL_04857
ARNT
(NRULE_0138)
Undecaprenyl phosphate-alpha-4-amino-4-deoxy-L-arabinose arabinosyl transferaseECL_04859
Riboflavin biosynthesis(NFUNC_0058)
RequireA
RIBB
(NRULE_0200)
3,4-dihydroxy-2-butanone 4-phosphate synthaseECL_04376
RIBA
(NRULE_0201)
GTP cyclohydrolase-2ECL_01744
RIBD
(NRULE_0202)
Riboflavin biosynthesis protein RibDECL_01172
RIBH
(NRULE_0203)
6,7-dimethyl-8-ribityllumazine synthaseECL_01173
RIBE
(NRULE_0204)
Riboflavin synthaseECL_02345
Participant 
RIBF
(NRULE_0205)
Riboflavin biosynthesis protein RibFECL_00833
Trehalose biosynthesis (from maltooligosaccharide)(NFUNC_0037)
RequireA
TREY
(NRULE_0140)
Maltooligosyl trehalose synthaseECL_01950
TREZ
(NRULE_0141)
Malto-oligosyltrehalose trehalohydrolaseECL_01949
Participant 
GLGX
(NRULE_0139)
Glycogen debranching enzymeECL_01951 ECL_04793
Trehalose biosynthesis (from NDP-glucose and glucose-6-phosphate)(NFUNC_0031)
RequireA
TPS
(NRULE_0119)
Trehalose-phosphate synthaseECL_01398
TPP
(NRULE_0120)
Trehalose-6-phosphate phosphataseECL_01397
Uptake of osmoprotectant(NFUNC_0061)
RequireA
OPUAC
(NRULE_0213)
Osmoprotectant ABC transporter substrate-binding proteinECL_04019
OPUAB
(NRULE_0214)
Osmoprotectant ABC transporter permease proteinECL_04018
OPUAA
(NRULE_0215)
Osmoprotectant ABC transporter ATP-binding proteinECL_04017 ECL_02216
C
BCCT
(NRULE_0220)
BCCT family transporterECL_02496 ECL_03120
D
PROP
(NRULE_0221)
Osmoprotectant transporterECL_00368
E
OPUE
(NRULE_0222)
Sodium/proline symporterECL_02618
Vitamin B6 biosynthesis (PdxA/PdxJ pathway)(NFUNC_0060)
RequireA
EPD
(NRULE_0208)
D-erythrose-4-phosphate dehydrogenaseECL_04247
PDXB
(NRULE_0209)
Erythronate-4-phosphate dehydrogenaseECL_03669
SERC
(NRULE_0210)
Phosphoserine aminotransferaseECL_02746
PDXA
(NRULE_0211)
4-hydroxythreonine-4-phosphate dehydrogenaseECL_01996 ECL_00850
PDXJ
(NRULE_0212)
Pyridoxine 5'-phosphate synthaseECL_03902

Genomic Overview

BioProject IDPRJNA45793
Locus_tag
INSDC entriesCP001918
Sequence statusComplete
Current status
Contig number3
Size(bp) 5,598,796
Gene 5,518
Finishing goal
Assembly method
Coverage
Technology
Reference
  • Complete genome sequence of Enterobacter cloacae subsp. cloacae type strain ATCC 13047. (J Bacteriol. 2010) PMID: 20207761

Data Download

Genomic nucleotide sequence Nucleotide sequence of the coding regions Translation of the coding sequneces List of genes / ORFs
FASTA
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FASTA
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FASTA
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TSV
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1.7 MB 1.5 MB 1.0 MB 422.7 KB