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Microbe : Escherichia coli

Microbe Description

NBRC No. 3972
Scientific name Escherichia coli
Synonymous name Not assigned
History IFO 3972 <- Takeda Chem. Ind., Ltd. <- Univ. Texas <- ATCC 8739 <- I.C. Gunsalus <- G.C. Crooks
Other culture collection No. ATCC 8739=CIP 53.126=DSM 1576=NCIB 8545
Other No.
Reference
Not assigned

Functional Potential >>Details

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TypePattern Component Gene CDS
Acid resistance (by GABA antiporter)(NFUNC_0071)
RequireA
GAD
(NRULE_0231)
Glutamate decarboxylaseEcolC_2164 EcolC_0200
GADC
(NRULE_0234)
Glutamate/gamma-aminobutyrate antiporterEcolC_2165
Alanine racemization(NFUNC_0063)
RequireA
ALR
(NRULE_0228)
Alanine racemaseEcolC_2435 EcolC_3975
Anthranilate biosynthesis(NFUNC_0038)
RequireA
GLAT
(NRULE_0142)
Glutamine amidotransferaseEcolC_0352 EcolC_2364
TRPE
(NRULE_0143)
Anthranilate synthase component IEcolC_2363
Aromatic azo compounds degradation(NFUNC_0073)
RequireA
AZOR
(NRULE_0236)
FMN-dependent NADH-azoreductaseEcolC_2246
Arsenical resistance(NFUNC_0004)
RequireA
ARSB1
(NRULE_0015)
Arsenical pump membrane proteinEcolC_0214
ARSC1
(NRULE_0017)
Arsenate reductaseEcolC_1181 EcolC_0213
Bacitracin resistance(NFUNC_0022)
RequireA
UPPP
(NRULE_0097)
Undecaprenyl-diphosphataseEcolC_0642
Beta-lactam antibiotic resistance(NFUNC_0033)
RequireC
BLAC
(NRULE_0124)
Beta-lactamase class CEcolC_3860
Betaine biosynthesis (from choline)(NFUNC_0049)
RequireA
BETA
(NRULE_0175)
Choline dehydrogenaseEcolC_3312
Biotin biosynthesis(NFUNC_0051)
RequireA
BIOF
(NRULE_0182)
8-amino-7-oxononanoate synthaseEcolC_2867
BIOA
(NRULE_0183)
Adenosylmethionine-8-amino-7-oxononanoate aminotransferaseEcolC_2869
BIOD
(NRULE_0184)
ATP-dependent dethiobiotin synthetase BioDEcolC_2037 EcolC_2865
BIOB
(NRULE_0185)
Biotin synthaseEcolC_2868
Cephalosporin resistance(NFUNC_0048)
RequireA
BLAC
(NRULE_0124)
Beta-lactamase class CEcolC_3860
Dihydroxy aromatic compounds degradation (via meta-cleavage pathway)(NFUNC_0011)
RequireA
EDIO
(NRULE_0058)
extradiol dioxygenaseEcolC_3704 EcolC_0659 EcolC_3277
METAH
(NRULE_0059)
meta-cleavage compound hydrolaseEcolC_3276
HPDH
(NRULE_0063)
2-hydroxypent-2,4-dienoate hydrataseEcolC_3275
HOA
(NRULE_0064)
4-hydroxy-2-oxovalerate aldolaseEcolC_3273
ACDH
(NRULE_0065)
Acetaldehyde dehydrogenaseEcolC_3274
Folate biosynthesis(NFUNC_0044)
RequireA
GLAT
(NRULE_0142)
Glutamine amidotransferaseEcolC_0352 EcolC_2364
DHPS
(NRULE_0144)
Dihydropteroate synthaseEcolC_0523
FOLM
(NRULE_0146)
Dihydrofolate reductase FolMEcolC_2024
FOLB
(NRULE_0158)
Dihydroneopterin aldolaseEcolC_0641 EcolC_1349
FOLK
(NRULE_0159)
2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinaseEcolC_3517
FOLC
(NRULE_0160)
Bifunctional protein FolCEcolC_1337
PABB
(NRULE_0161)
Para-aminobenzoate synthase component IEcolC_1821
PABC
(NRULE_0162)
Aminodeoxychorismate lyaseEcolC_2505
B
GLAT
(NRULE_0142)
Glutamine amidotransferaseEcolC_0352 EcolC_2364
DHPS
(NRULE_0144)
Dihydropteroate synthaseEcolC_0523
FOLA
(NRULE_0147)
Dihydrofolate reductaseEcolC_3607
FOLB
(NRULE_0158)
Dihydroneopterin aldolaseEcolC_1349 EcolC_0641
FOLK
(NRULE_0159)
2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinaseEcolC_3517
FOLC
(NRULE_0160)
Bifunctional protein FolCEcolC_1337
PABB
(NRULE_0161)
Para-aminobenzoate synthase component IEcolC_1821
PABC
(NRULE_0162)
Aminodeoxychorismate lyaseEcolC_2505
GABA biosynthesis(NFUNC_0066)
RequireA
GAD
(NRULE_0231)
Glutamate decarboxylaseEcolC_0200 EcolC_2164
4-hydroxyphenylacetate degradation(NFUNC_0068)
RequireA
HPAB1
(NRULE_0085)
4-hydroxyphenylacetate 3-monooxygenase oxygenase componentEcolC_3710
HPAC
(NRULE_0102)
4-hydroxyphenylacetate 3-monooxygenase reductase componentEcolC_3711
HPAD1
(NRULE_0193)
Homoprotocatechuate 2,3-dioxygenaseEcolC_3704
HPAE
(NRULE_0195)
5-carboxymethyl-2-hydroxymuconic-semialdehyde dehydrogenaseEcolC_3703
HPAF
(NRULE_0196)
5-carboxymethyl-2-hydroxymuconate Delta-isomeraseEcolC_3705
HPAG
(NRULE_0197)
5-oxopent-3-ene-1,2,5-tricarboxylate decarboxylase/2-hydroxyhepta-2,4-diene-1,7-dioate Delta-isomeraseEcolC_3702
HPAH
(NRULE_0198)
2-oxo-hepta-3-ene-1,7-dioate hydrataseEcolC_3706
HPAI
(NRULE_0199)
2,4-dihydroxyhept-2-ene-1,7-dioate aldolaseEcolC_3707
C
HPAB1
(NRULE_0085)
4-hydroxyphenylacetate 3-monooxygenase oxygenase componentEcolC_3710
FADR1
(NRULE_0101)
NADH-dependent flavin reductaseEcolC_3711 EcolC_2588 EcolC_2194
HPAD1
(NRULE_0193)
Homoprotocatechuate 2,3-dioxygenaseEcolC_3704
HPAE
(NRULE_0195)
5-carboxymethyl-2-hydroxymuconic-semialdehyde dehydrogenaseEcolC_3703
HPAF
(NRULE_0196)
5-carboxymethyl-2-hydroxymuconate Delta-isomeraseEcolC_3705
HPAG
(NRULE_0197)
5-oxopent-3-ene-1,2,5-tricarboxylate decarboxylase/2-hydroxyhepta-2,4-diene-1,7-dioate Delta-isomeraseEcolC_3702
HPAH
(NRULE_0198)
2-oxo-hepta-3-ene-1,7-dioate hydrataseEcolC_3706
HPAI
(NRULE_0199)
2,4-dihydroxyhept-2-ene-1,7-dioate aldolaseEcolC_3707
Macrolide antibiotic resistance(NFUNC_0045)
RequireB
RLMA
(NRULE_0165)
23S rRNA (guanine-N(1))-methyltransferaseEcolC_1810
C
MACA
(NRULE_0166)
Macrolide-specific efflux protein MacAEcolC_2718
MACB
(NRULE_0167)
Macrolide export ATP-binding/permease protein MacBEcolC_2717
Metal-binding protein(NFUNC_0105)
RequireA
MOP
(NRULE_0322)
Putative molybdenum-binding proteinEcolC_2307 EcolC_2901 EcolC_2897
B
MODE
(NRULE_0323)
Putative molybdate-dependent transcriptional regulatorEcolC_2901
C
MODA
(NRULE_0324)
Molybdate ABC transporter substrate-binding proteinEcolC_4101 EcolC_3995 EcolC_2899 EcolC_1254
E
CUER
(NRULE_0328)
Copper-responsive transcriptional regulator CueREcolC_3129
F
SOXR
(NRULE_0329)
Redox-sensitive transcriptional activator SoxREcolC_3964
G
ZNTR
(NRULE_0330)
Zinc-responsive transcriptional regulator ZntREcolC_0421
H
NIKR
(NRULE_0331)
Nickel-responsive transcriptional regulator NikREcolC_0235
I
ISCR
(NRULE_0332)
Rrf2 family transcriptional regulator IscREcolC_1146
Molybdate transport (ABC transporter)(NFUNC_0097)
RequireA
MODA
(NRULE_0324)
Molybdate ABC transporter substrate-binding proteinEcolC_3995 EcolC_4101 EcolC_2899 EcolC_1254
Participant 
MODE
(NRULE_0323)
Putative molybdate-dependent transcriptional regulatorEcolC_2901
 
MODB
(NRULE_0325)
Molybdate ABC transporter permease proteinEcolC_2898
 
MODC
(NRULE_0326)
Molybdate ABC transporter ATP-binding proteinEcolC_2897
(R)-pantothenate biosynthesis(NFUNC_0030)
RequireA
PAND
(NRULE_0115)
Aspartate 1-decarboxylaseEcolC_3528
PANB
(NRULE_0116)
3-methyl-2-oxobutanoate hydroxymethyltransferaseEcolC_3525
PANE
(NRULE_0117)
2-dehydropantoate 2-reductaseEcolC_3208
PANC
(NRULE_0118)
Pantothenate synthetaseEcolC_3526
Phenol degradation(NFUNC_0028)
RequireB
PHEA1
(NRULE_0083)
Aromatic ring hydroxylaseEcolC_3710
C
PHEA2
(NRULE_0084)
Aromatic ring hydroxylaseEcolC_3278
Participant 
FDR2
(NRULE_0057)
Ferredoxin reductaseEcolC_1135
 
FDR1
(NRULE_0032)
Oxygenase electron transfer componentEcolC_2263 EcolC_1830 EcolC_2724
 
FDX1
(NRULE_0034)
Putative Rieske-type ferredoxinEcolC_1831 EcolC_1139 EcolC_1137
 
FADR1
(NRULE_0101)
NADH-dependent flavin reductaseEcolC_2588 EcolC_3711 EcolC_2194
Phytic acid hydrolysis(NFUNC_0085)
RequireB
APPA
(NRULE_0259)
Periplasmic AppA proteinEcolC_2616
Polymyxin resistance(NFUNC_0036)
RequireA
ARNA
(NRULE_0132)
Bifunctional polymyxin resistance protein ArnAEcolC_1394
ARNB
(NRULE_0133)
UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferaseEcolC_1396
ARNC
(NRULE_0134)
Undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferaseEcolC_1395
ARND
(NRULE_0135)
Probable 4-deoxy-4-formamido-L-arabinose-phosphoundecaprenol deformylase ArnDEcolC_1393
ARNE
(NRULE_0136)
Probable 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnEEcolC_1391
ARNF
(NRULE_0137)
Probable 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnFEcolC_1390
ARNT
(NRULE_0138)
Undecaprenyl phosphate-alpha-4-amino-4-deoxy-L-arabinose arabinosyl transferaseEcolC_1392
Riboflavin biosynthesis(NFUNC_0058)
RequireA
RIBB
(NRULE_0200)
3,4-dihydroxy-2-butanone 4-phosphate synthaseEcolC_0656
RIBA
(NRULE_0201)
GTP cyclohydrolase-2EcolC_2349
RIBD
(NRULE_0202)
Riboflavin biosynthesis protein RibDEcolC_3219
RIBH
(NRULE_0203)
6,7-dimethyl-8-ribityllumazine synthaseEcolC_3218
RIBE
(NRULE_0204)
Riboflavin synthaseEcolC_1967
Participant 
RIBF
(NRULE_0205)
Riboflavin biosynthesis protein RibFEcolC_3630
Trehalose biosynthesis (from NDP-glucose and glucose-6-phosphate)(NFUNC_0031)
RequireA
TPS
(NRULE_0119)
Trehalose-phosphate synthaseEcolC_1738
TPP
(NRULE_0120)
Trehalose-6-phosphate phosphataseEcolC_1737
Uptake of osmoprotectant(NFUNC_0061)
RequireA
OPUAC
(NRULE_0213)
Osmoprotectant ABC transporter substrate-binding proteinEcolC_1027
OPUAB
(NRULE_0214)
Osmoprotectant ABC transporter permease proteinEcolC_1028
OPUAA
(NRULE_0215)
Osmoprotectant ABC transporter ATP-binding proteinEcolC_1029
C
BCCT
(NRULE_0220)
BCCT family transporterEcolC_3309 EcolC_0734 EcolC_1832 EcolC_3615
D
PROP
(NRULE_0221)
Osmoprotectant transporterEcolC_3916
E
OPUE
(NRULE_0222)
Sodium/proline symporterEcolC_2580
Vitamin B6 biosynthesis (PdxA/PdxJ pathway)(NFUNC_0060)
RequireA
EPD
(NRULE_0208)
D-erythrose-4-phosphate dehydrogenaseEcolC_0783
PDXB
(NRULE_0209)
Erythronate-4-phosphate dehydrogenaseEcolC_1332
SERC
(NRULE_0210)
Phosphoserine aminotransferaseEcolC_2689
PDXA
(NRULE_0211)
4-hydroxythreonine-4-phosphate dehydrogenaseEcolC_3603
PDXJ
(NRULE_0212)
Pyridoxine 5'-phosphate synthaseEcolC_1113

Genomic Overview

BioProject IDPRJNA18083
Locus_tagECOLC
INSDC entriesCP000946
Sequence statusComplete
Current status
Contig number1
Size(bp) 4,746,218
Gene 4,200
Finishing goal
Assembly method
Coverage
Technology
Reference

Data Download

Genomic nucleotide sequence Nucleotide sequence of the coding regions Translation of the coding sequneces List of genes / ORFs
FASTA
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FASTA
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FASTA
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TSV
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1.4 MB 1.2 MB 890.7 KB 343.1 KB