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微生物 : Escherichia coli

微生物株情報

NBRC番号 3972
学名 Escherichia coli
別名（シノニム） 該当データなし
由来 IFO 3972 <- Takeda Chem. Ind., Ltd. <- Univ. Texas <- ATCC 8739 <- I.C. Gunsalus <- G.C. Crooks
他保存機関番号 ATCC 8739=CIP 53.126=DSM 1576=NCIB 8545
他株番号
参考文献
該当データなし

推定保有機能 >>詳細

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タイプパターン 構成遺伝子 該当CDS
Acid resistance (by GABA antiporter)(NFUNC_0071)
必須A
GAD
(NRULE_0231)
Glutamate decarboxylaseEcolC_2164 EcolC_0200
GADC
(NRULE_0234)
Glutamate/gamma-aminobutyrate antiporterEcolC_2165
Alanine racemization(NFUNC_0063)
必須A
ALR
(NRULE_0228)
Alanine racemaseEcolC_2435 EcolC_3975
Anthranilate biosynthesis(NFUNC_0038)
必須A
GLAT
(NRULE_0142)
Glutamine amidotransferaseEcolC_0352 EcolC_2364
TRPE
(NRULE_0143)
Anthranilate synthase component IEcolC_2363
Aromatic azo compounds degradation(NFUNC_0073)
必須A
AZOR
(NRULE_0236)
FMN-dependent NADH-azoreductaseEcolC_2246
Arsenical resistance(NFUNC_0004)
必須A
ARSB1
(NRULE_0015)
Arsenical pump membrane proteinEcolC_0214
ARSC1
(NRULE_0017)
Arsenate reductaseEcolC_1181 EcolC_0213
Bacitracin resistance(NFUNC_0022)
必須A
UPPP
(NRULE_0097)
Undecaprenyl-diphosphataseEcolC_0642
Beta-lactam antibiotic resistance(NFUNC_0033)
必須C
BLAC
(NRULE_0124)
Beta-lactamase class CEcolC_3860
Betaine biosynthesis (from choline)(NFUNC_0049)
必須A
BETA
(NRULE_0175)
Choline dehydrogenaseEcolC_3312
Biotin biosynthesis(NFUNC_0051)
必須A
BIOF
(NRULE_0182)
8-amino-7-oxononanoate synthaseEcolC_2867
BIOA
(NRULE_0183)
Adenosylmethionine-8-amino-7-oxononanoate aminotransferaseEcolC_2869
BIOD
(NRULE_0184)
ATP-dependent dethiobiotin synthetase BioDEcolC_2037 EcolC_2865
BIOB
(NRULE_0185)
Biotin synthaseEcolC_2868
Cephalosporin resistance(NFUNC_0048)
必須A
BLAC
(NRULE_0124)
Beta-lactamase class CEcolC_3860
Dihydroxy aromatic compounds degradation (via meta-cleavage pathway)(NFUNC_0011)
必須A
EDIO
(NRULE_0058)
extradiol dioxygenaseEcolC_3704 EcolC_0659 EcolC_3277
METAH
(NRULE_0059)
meta-cleavage compound hydrolaseEcolC_3276
HPDH
(NRULE_0063)
2-hydroxypent-2,4-dienoate hydrataseEcolC_3275
HOA
(NRULE_0064)
4-hydroxy-2-oxovalerate aldolaseEcolC_3273
ACDH
(NRULE_0065)
Acetaldehyde dehydrogenaseEcolC_3274
Folate biosynthesis(NFUNC_0044)
必須A
GLAT
(NRULE_0142)
Glutamine amidotransferaseEcolC_0352 EcolC_2364
DHPS
(NRULE_0144)
Dihydropteroate synthaseEcolC_0523
FOLM
(NRULE_0146)
Dihydrofolate reductase FolMEcolC_2024
FOLB
(NRULE_0158)
Dihydroneopterin aldolaseEcolC_0641 EcolC_1349
FOLK
(NRULE_0159)
2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinaseEcolC_3517
FOLC
(NRULE_0160)
Bifunctional protein FolCEcolC_1337
PABB
(NRULE_0161)
Para-aminobenzoate synthase component IEcolC_1821
PABC
(NRULE_0162)
Aminodeoxychorismate lyaseEcolC_2505
B
GLAT
(NRULE_0142)
Glutamine amidotransferaseEcolC_0352 EcolC_2364
DHPS
(NRULE_0144)
Dihydropteroate synthaseEcolC_0523
FOLA
(NRULE_0147)
Dihydrofolate reductaseEcolC_3607
FOLB
(NRULE_0158)
Dihydroneopterin aldolaseEcolC_1349 EcolC_0641
FOLK
(NRULE_0159)
2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinaseEcolC_3517
FOLC
(NRULE_0160)
Bifunctional protein FolCEcolC_1337
PABB
(NRULE_0161)
Para-aminobenzoate synthase component IEcolC_1821
PABC
(NRULE_0162)
Aminodeoxychorismate lyaseEcolC_2505
GABA biosynthesis(NFUNC_0066)
必須A
GAD
(NRULE_0231)
Glutamate decarboxylaseEcolC_0200 EcolC_2164
4-hydroxyphenylacetate degradation(NFUNC_0068)
必須A
HPAB1
(NRULE_0085)
4-hydroxyphenylacetate 3-monooxygenase oxygenase componentEcolC_3710
HPAC
(NRULE_0102)
4-hydroxyphenylacetate 3-monooxygenase reductase componentEcolC_3711
HPAD1
(NRULE_0193)
Homoprotocatechuate 2,3-dioxygenaseEcolC_3704
HPAE
(NRULE_0195)
5-carboxymethyl-2-hydroxymuconic-semialdehyde dehydrogenaseEcolC_3703
HPAF
(NRULE_0196)
5-carboxymethyl-2-hydroxymuconate Delta-isomeraseEcolC_3705
HPAG
(NRULE_0197)
5-oxopent-3-ene-1,2,5-tricarboxylate decarboxylase/2-hydroxyhepta-2,4-diene-1,7-dioate Delta-isomeraseEcolC_3702
HPAH
(NRULE_0198)
2-oxo-hepta-3-ene-1,7-dioate hydrataseEcolC_3706
HPAI
(NRULE_0199)
2,4-dihydroxyhept-2-ene-1,7-dioate aldolaseEcolC_3707
C
HPAB1
(NRULE_0085)
4-hydroxyphenylacetate 3-monooxygenase oxygenase componentEcolC_3710
FADR1
(NRULE_0101)
NADH-dependent flavin reductaseEcolC_3711 EcolC_2588 EcolC_2194
HPAD1
(NRULE_0193)
Homoprotocatechuate 2,3-dioxygenaseEcolC_3704
HPAE
(NRULE_0195)
5-carboxymethyl-2-hydroxymuconic-semialdehyde dehydrogenaseEcolC_3703
HPAF
(NRULE_0196)
5-carboxymethyl-2-hydroxymuconate Delta-isomeraseEcolC_3705
HPAG
(NRULE_0197)
5-oxopent-3-ene-1,2,5-tricarboxylate decarboxylase/2-hydroxyhepta-2,4-diene-1,7-dioate Delta-isomeraseEcolC_3702
HPAH
(NRULE_0198)
2-oxo-hepta-3-ene-1,7-dioate hydrataseEcolC_3706
HPAI
(NRULE_0199)
2,4-dihydroxyhept-2-ene-1,7-dioate aldolaseEcolC_3707
Macrolide antibiotic resistance(NFUNC_0045)
必須B
RLMA
(NRULE_0165)
23S rRNA (guanine-N(1))-methyltransferaseEcolC_1810
C
MACA
(NRULE_0166)
Macrolide-specific efflux protein MacAEcolC_2718
MACB
(NRULE_0167)
Macrolide export ATP-binding/permease protein MacBEcolC_2717
Metal-binding protein(NFUNC_0105)
必須A
MOP
(NRULE_0322)
Putative molybdenum-binding proteinEcolC_2307 EcolC_2901 EcolC_2897
B
MODE
(NRULE_0323)
Putative molybdate-dependent transcriptional regulatorEcolC_2901
C
MODA
(NRULE_0324)
Molybdate ABC transporter substrate-binding proteinEcolC_4101 EcolC_3995 EcolC_2899 EcolC_1254
E
CUER
(NRULE_0328)
Copper-responsive transcriptional regulator CueREcolC_3129
F
SOXR
(NRULE_0329)
Redox-sensitive transcriptional activator SoxREcolC_3964
G
ZNTR
(NRULE_0330)
Zinc-responsive transcriptional regulator ZntREcolC_0421
H
NIKR
(NRULE_0331)
Nickel-responsive transcriptional regulator NikREcolC_0235
I
ISCR
(NRULE_0332)
Rrf2 family transcriptional regulator IscREcolC_1146
Molybdate transport (ABC transporter)(NFUNC_0097)
必須A
MODA
(NRULE_0324)
Molybdate ABC transporter substrate-binding proteinEcolC_3995 EcolC_4101 EcolC_2899 EcolC_1254
任意 
MODE
(NRULE_0323)
Putative molybdate-dependent transcriptional regulatorEcolC_2901
 
MODB
(NRULE_0325)
Molybdate ABC transporter permease proteinEcolC_2898
 
MODC
(NRULE_0326)
Molybdate ABC transporter ATP-binding proteinEcolC_2897
(R)-pantothenate biosynthesis(NFUNC_0030)
必須A
PAND
(NRULE_0115)
Aspartate 1-decarboxylaseEcolC_3528
PANB
(NRULE_0116)
3-methyl-2-oxobutanoate hydroxymethyltransferaseEcolC_3525
PANE
(NRULE_0117)
2-dehydropantoate 2-reductaseEcolC_3208
PANC
(NRULE_0118)
Pantothenate synthetaseEcolC_3526
Phenol degradation(NFUNC_0028)
必須B
PHEA1
(NRULE_0083)
Aromatic ring hydroxylaseEcolC_3710
C
PHEA2
(NRULE_0084)
Aromatic ring hydroxylaseEcolC_3278
任意 
FDR2
(NRULE_0057)
Ferredoxin reductaseEcolC_1135
 
FDR1
(NRULE_0032)
Oxygenase electron transfer componentEcolC_2263 EcolC_1830 EcolC_2724
 
FDX1
(NRULE_0034)
Putative Rieske-type ferredoxinEcolC_1831 EcolC_1139 EcolC_1137
 
FADR1
(NRULE_0101)
NADH-dependent flavin reductaseEcolC_2588 EcolC_3711 EcolC_2194
Phytic acid hydrolysis(NFUNC_0085)
必須B
APPA
(NRULE_0259)
Periplasmic AppA proteinEcolC_2616
Polymyxin resistance(NFUNC_0036)
必須A
ARNA
(NRULE_0132)
Bifunctional polymyxin resistance protein ArnAEcolC_1394
ARNB
(NRULE_0133)
UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferaseEcolC_1396
ARNC
(NRULE_0134)
Undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferaseEcolC_1395
ARND
(NRULE_0135)
Probable 4-deoxy-4-formamido-L-arabinose-phosphoundecaprenol deformylase ArnDEcolC_1393
ARNE
(NRULE_0136)
Probable 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnEEcolC_1391
ARNF
(NRULE_0137)
Probable 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnFEcolC_1390
ARNT
(NRULE_0138)
Undecaprenyl phosphate-alpha-4-amino-4-deoxy-L-arabinose arabinosyl transferaseEcolC_1392
Riboflavin biosynthesis(NFUNC_0058)
必須A
RIBB
(NRULE_0200)
3,4-dihydroxy-2-butanone 4-phosphate synthaseEcolC_0656
RIBA
(NRULE_0201)
GTP cyclohydrolase-2EcolC_2349
RIBD
(NRULE_0202)
Riboflavin biosynthesis protein RibDEcolC_3219
RIBH
(NRULE_0203)
6,7-dimethyl-8-ribityllumazine synthaseEcolC_3218
RIBE
(NRULE_0204)
Riboflavin synthaseEcolC_1967
任意 
RIBF
(NRULE_0205)
Riboflavin biosynthesis protein RibFEcolC_3630
Trehalose biosynthesis (from NDP-glucose and glucose-6-phosphate)(NFUNC_0031)
必須A
TPS
(NRULE_0119)
Trehalose-phosphate synthaseEcolC_1738
TPP
(NRULE_0120)
Trehalose-6-phosphate phosphataseEcolC_1737
Uptake of osmoprotectant(NFUNC_0061)
必須A
OPUAC
(NRULE_0213)
Osmoprotectant ABC transporter substrate-binding proteinEcolC_1027
OPUAB
(NRULE_0214)
Osmoprotectant ABC transporter permease proteinEcolC_1028
OPUAA
(NRULE_0215)
Osmoprotectant ABC transporter ATP-binding proteinEcolC_1029
C
BCCT
(NRULE_0220)
BCCT family transporterEcolC_3309 EcolC_0734 EcolC_1832 EcolC_3615
D
PROP
(NRULE_0221)
Osmoprotectant transporterEcolC_3916
E
OPUE
(NRULE_0222)
Sodium/proline symporterEcolC_2580
Vitamin B6 biosynthesis (PdxA/PdxJ pathway)(NFUNC_0060)
必須A
EPD
(NRULE_0208)
D-erythrose-4-phosphate dehydrogenaseEcolC_0783
PDXB
(NRULE_0209)
Erythronate-4-phosphate dehydrogenaseEcolC_1332
SERC
(NRULE_0210)
Phosphoserine aminotransferaseEcolC_2689
PDXA
(NRULE_0211)
4-hydroxythreonine-4-phosphate dehydrogenaseEcolC_3603
PDXJ
(NRULE_0212)
Pyridoxine 5'-phosphate synthaseEcolC_1113

ゲノム配列情報

BioProject IDPRJNA18083
ローカスタグECOLC
INSDC entriesCP000946
ステータスComplete
解析状況
コンティグ数1
サイズ(bp) 4,746,218
遺伝子数 4,200
フィニッシングゴール
アセンブル方法
冗長度
シーケンス方法
参考文献

データダウンロード

ゲノム塩基配列 CDS塩基配列 CDSアミノ酸変換配列 遺伝子/ORF リスト
FASTA
gz		 FASTA
gz		 FASTA
gz		 TSV
uncompressed
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