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Microbe : Cupriavidus metallidurans

Microbe Description

NBRC No. 102507
Scientific name Cupriavidus metallidurans
Synonymous name Ralstonia metallidurans
Wautersia metallidurans
History IAM 14785 <- H. Kim, CH34
Other culture collection No. ATCC 43123=CCUG 13724=CCUG 38400=CIP 107179=DSM 2839=IAM 14785=JCM 21315=KCTC 12956=LMG 1195
Other No. CH34
Reference
11594608
Classification of metal-resistant bacteria from industrial biotopes as Ralstonia campinensis sp. nov., Ralstonia metallidurans sp. nov. and Ralstonia basilensis Steinle et al. 1998 emend. (Int J Syst Evol Microbiol. 2001)
15023939
Wautersia gen. nov., a novel genus accommodating the phylogenetic lineage including Ralstonia eutropha and related species, and proposal of Ralstonia [Pseudomonas] syzygii (Roberts et al. 1990) comb. nov. (Int J Syst Evol Microbiol. 2004)
15545472
Taxonomy of the genus Cupriavidus: a tale of lost and found. (Int J Syst Evol Microbiol. 2004)

Functional Potential >>Details

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TypePattern Component Gene CDS
Alanine racemization(NFUNC_0063)
RequireA
ALR
(NRULE_0228)
Alanine racemaseRmet_1400
n-alkane hydroxylation(NFUNC_0008)
RequireC
MMA
(NRULE_0027)
Multicomponent monooxygenase alpha subunitRmet_1312 Rmet_1316 Rmet_1328 Rmet_1784 Rmet_1330 Rmet_1786
MMB
(NRULE_0028)
Multicomponent monooxygenase beta subunitRmet_1316 Rmet_1786 Rmet_1784 Rmet_1330 Rmet_1328 Rmet_1312
FDR1
(NRULE_0032)
Oxygenase electron transfer componentRmet_1326 Rmet_1311 Rmet_3373 Rmet_3630 Rmet_4884 Rmet_4932 Rmet_5517 Rmet_5549 Rmet_0543 Rmet_1782 Rmet_2861
MME
(NRULE_0033)
Multicomponent monooxygenase effector proteinRmet_1313 Rmet_1785 Rmet_1329
Participant 
RUBA
(NRULE_0039)
RubredoxinRmet_3710 Rmet_0668 Rmet_1289 Rmet_3952
 
MMG1
(NRULE_0029)
Multicomponent monooxygenase gamma subunitRmet_1327 Rmet_1783
 
MMG2
(NRULE_0030)
Multicomponent monooxygenase gamma subunitRmet_1315
 
FDX1
(NRULE_0034)
Putative Rieske-type ferredoxinRmet_1812 Rmet_5546 Rmet_4882 Rmet_3230 Rmet_2618 Rmet_2437 Rmet_1314 Rmet_5548
Anthranilate biosynthesis(NFUNC_0038)
RequireA
GLAT
(NRULE_0142)
Glutamine amidotransferaseRmet_3179
TRPE
(NRULE_0143)
Anthranilate synthase component IRmet_3178
Arginine degradation(NFUNC_0074)
RequireA
ARGI
(NRULE_0239)
ArginaseRmet_3926
Aromatic azo compounds degradation(NFUNC_0073)
RequireA
AZOR
(NRULE_0236)
FMN-dependent NADH-azoreductaseRmet_1590 Rmet_3438
Arsenical resistance(NFUNC_0004)
RequireD
ARSB2
(NRULE_0016)
Arsenite resistance protein ArsBRmet_0330
ARSC1
(NRULE_0017)
Arsenate reductaseRmet_0329 Rmet_3436
E
ARSB2
(NRULE_0016)
Arsenite resistance protein ArsBRmet_0330
ARSC2
(NRULE_0018)
Arsenate reductaseRmet_0331
Participant 
ARSH
(NRULE_0021)
ArsH proteinRmet_0328
Bacitracin resistance(NFUNC_0022)
RequireA
UPPP
(NRULE_0097)
Undecaprenyl-diphosphataseRmet_2705
Benzoate degradation (via hydroxylation by dioxygenase)(NFUNC_0017)
RequireA
BENA
(NRULE_0046)
Benzoate 1,2-dioxygenase alpha subunitRmet_4882
BENB
(NRULE_0047)
Benzoate 1,2-dioxygenase beta subunitRmet_4883
BEND
(NRULE_0082)
1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenaseRmet_4885
Participant 
BENC
(NRULE_0055)
Benzoate 1,2-dioxygenase electron transfer componentRmet_4884
 
FDR1
(NRULE_0032)
Oxygenase electron transfer componentRmet_0543 Rmet_4932 Rmet_4884 Rmet_3630 Rmet_3373 Rmet_2861 Rmet_1782 Rmet_1326 Rmet_1311 Rmet_5549 Rmet_5517
 
FDX1
(NRULE_0034)
Putative Rieske-type ferredoxinRmet_2437 Rmet_2618 Rmet_3230 Rmet_4882 Rmet_5546 Rmet_1812 Rmet_5548 Rmet_1314
Beta-lactam antibiotic resistance(NFUNC_0033)
RequireC
BLAC
(NRULE_0124)
Beta-lactamase class CRmet_1776
Bioplastic degradation(NFUNC_0015)
RequireA
PHAZ1
(NRULE_0023)
Intracellular poly(3-hydroxyalkanoate) depolymeraseRmet_2701 Rmet_1017
B
PHAZ2
(NRULE_0080)
Poly(3-hydroxyalkanoate) depolymeraseRmet_3823
Participant 
PHAY
(NRULE_0022)
D-(-)-3-hydroxybutyrate oligomer hydrolaseRmet_1960
Bioplastic synthesis(NFUNC_0001)
RequireA
PHAC1
(NRULE_0010)
Poly(3-hydroxyalkanoate) polymeraseRmet_1671 Rmet_1356
Participant 
PHAB
(NRULE_0011)
Acetoacetyl-CoA reductaseRmet_5123 Rmet_1333 Rmet_1358
 
PHAP1
(NRULE_0374)
PhasinRmet_1200 Rmet_5043
Catechol degradation (beta-ketoadipate pathway)(NFUNC_0013)
RequireA
CATA
(NRULE_0052)
Catechol 1,2-dioxygenaseRmet_4881 Rmet_1781
CATB2
(NRULE_0053)
(Chloro)muconate cycloisomeraseRmet_4878
CATC
(NRULE_0054)
Muconolactone isomeraseRmet_4677 Rmet_4877
PCAD
(NRULE_0070)
3-oxoadipate enol-lactonaseRmet_4016 Rmet_4676 Rmet_4875 Rmet_0084
PCAI
(NRULE_0072)
3-oxoadipate CoA-transferase subunit ARmet_5059 Rmet_3667
PCAJ
(NRULE_0073)
3-oxoadipate CoA-transferase subunit BRmet_5060 Rmet_3668
PCAF
(NRULE_0074)
Beta-ketoadipyl-CoA thiolaseRmet_3669
B
CATA
(NRULE_0052)
Catechol 1,2-dioxygenaseRmet_1781 Rmet_4881
CATC
(NRULE_0054)
Muconolactone isomeraseRmet_4877 Rmet_4677
PCAD
(NRULE_0070)
3-oxoadipate enol-lactonaseRmet_4676 Rmet_4875 Rmet_0084 Rmet_4016
PCAI
(NRULE_0072)
3-oxoadipate CoA-transferase subunit ARmet_3667 Rmet_5059
PCAJ
(NRULE_0073)
3-oxoadipate CoA-transferase subunit BRmet_3668 Rmet_5060
PCAF
(NRULE_0074)
Beta-ketoadipyl-CoA thiolaseRmet_3669
CATB1
(NRULE_0386)
Muconate cycloisomeraseRmet_4878
C
CATA
(NRULE_0052)
Catechol 1,2-dioxygenaseRmet_1781 Rmet_4881
CATC
(NRULE_0054)
Muconolactone isomeraseRmet_4677 Rmet_4877
PCAL
(NRULE_0071)
3-oxoadipate enol-lactone hydrolase/4-carboxymuconolactone decarboxylaseRmet_4016
PCAI
(NRULE_0072)
3-oxoadipate CoA-transferase subunit ARmet_5059 Rmet_3667
PCAJ
(NRULE_0073)
3-oxoadipate CoA-transferase subunit BRmet_3668 Rmet_5060
PCAF
(NRULE_0074)
Beta-ketoadipyl-CoA thiolaseRmet_3669
CATB1
(NRULE_0386)
Muconate cycloisomeraseRmet_4878
D
CATA
(NRULE_0052)
Catechol 1,2-dioxygenaseRmet_1781 Rmet_4881
CATB2
(NRULE_0053)
(Chloro)muconate cycloisomeraseRmet_4878
CATC
(NRULE_0054)
Muconolactone isomeraseRmet_4677 Rmet_4877
PCAL
(NRULE_0071)
3-oxoadipate enol-lactone hydrolase/4-carboxymuconolactone decarboxylaseRmet_4016
PCAI
(NRULE_0072)
3-oxoadipate CoA-transferase subunit ARmet_5059 Rmet_3667
PCAJ
(NRULE_0073)
3-oxoadipate CoA-transferase subunit BRmet_3668 Rmet_5060
PCAF
(NRULE_0074)
Beta-ketoadipyl-CoA thiolaseRmet_3669
Cephalosporin resistance(NFUNC_0048)
RequireA
BLAC
(NRULE_0124)
Beta-lactamase class CRmet_1776
Dihydroxy aromatic compounds degradation (via meta-cleavage pathway)(NFUNC_0011)
RequireA
EDIO
(NRULE_0058)
extradiol dioxygenaseRmet_1324 Rmet_3709 Rmet_3401
METAH
(NRULE_0059)
meta-cleavage compound hydrolaseRmet_1306
HPDH
(NRULE_0063)
2-hydroxypent-2,4-dienoate hydrataseRmet_1321
HOA
(NRULE_0064)
4-hydroxy-2-oxovalerate aldolaseRmet_5209 Rmet_1319
ACDH
(NRULE_0065)
Acetaldehyde dehydrogenaseRmet_5208 Rmet_1320
B
EDIO
(NRULE_0058)
extradiol dioxygenaseRmet_3401 Rmet_1324 Rmet_3709
2HMSD
(NRULE_0060)
2-hydroxymuconic semialdehyde dehydrogenaseRmet_5206 Rmet_1322
4OT
(NRULE_0061)
4-oxalocrotonate tautomeraseRmet_1317 Rmet_0808
4OD
(NRULE_0062)
4-oxalocrotonate decarboxylaseRmet_1318
HPDH
(NRULE_0063)
2-hydroxypent-2,4-dienoate hydrataseRmet_1321
HOA
(NRULE_0064)
4-hydroxy-2-oxovalerate aldolaseRmet_1319 Rmet_5209
ACDH
(NRULE_0065)
Acetaldehyde dehydrogenaseRmet_1320 Rmet_5208
GABA biosynthesis(NFUNC_0066)
RequireA
GAD
(NRULE_0231)
Glutamate decarboxylaseRmet_1766
Mercury resistance(NFUNC_0005)
RequireA
MERA
(NRULE_0008)
Mercuric reductaseRmet_6183 Rmet_6174
Metal-binding protein(NFUNC_0105)
RequireA
MOP
(NRULE_0322)
Putative molybdenum-binding proteinRmet_2234 Rmet_5121 Rmet_0567
B
MODE
(NRULE_0323)
Putative molybdate-dependent transcriptional regulatorRmet_0567
C
MODA
(NRULE_0324)
Molybdate ABC transporter substrate-binding proteinRmet_0571
E
CUER
(NRULE_0328)
Copper-responsive transcriptional regulator CueRRmet_3523
F
SOXR
(NRULE_0329)
Redox-sensitive transcriptional activator SoxRRmet_4538
I
ISCR
(NRULE_0332)
Rrf2 family transcriptional regulator IscRRmet_1024
Molybdate transport (ABC transporter)(NFUNC_0097)
RequireA
MODA
(NRULE_0324)
Molybdate ABC transporter substrate-binding proteinRmet_0571
Participant 
MODE
(NRULE_0323)
Putative molybdate-dependent transcriptional regulatorRmet_0567
 
MODB
(NRULE_0325)
Molybdate ABC transporter permease proteinRmet_0570
Phenol degradation(NFUNC_0028)
RequireA
MMA
(NRULE_0027)
Multicomponent monooxygenase alpha subunitRmet_1328 Rmet_1330 Rmet_1784 Rmet_1786 Rmet_1316 Rmet_1312
MMB
(NRULE_0028)
Multicomponent monooxygenase beta subunitRmet_1786 Rmet_1312 Rmet_1316 Rmet_1328 Rmet_1330 Rmet_1784
MMG1
(NRULE_0029)
Multicomponent monooxygenase gamma subunitRmet_1327 Rmet_1783
Participant 
FDR1
(NRULE_0032)
Oxygenase electron transfer componentRmet_1782 Rmet_1326 Rmet_1311 Rmet_0543 Rmet_5549 Rmet_4932 Rmet_5517 Rmet_4884 Rmet_3630 Rmet_3373 Rmet_2861
 
MME
(NRULE_0033)
Multicomponent monooxygenase effector proteinRmet_1785 Rmet_1329 Rmet_1313
 
FDX1
(NRULE_0034)
Putative Rieske-type ferredoxinRmet_5548 Rmet_5546 Rmet_4882 Rmet_3230 Rmet_2618 Rmet_2437 Rmet_1812 Rmet_1314
 
FADR1
(NRULE_0101)
NADH-dependent flavin reductaseRmet_2646 Rmet_2978 Rmet_3318
Protocatechuate degradation (beta-ketoadipate pathway)(NFUNC_0014)
RequireA
PCAG
(NRULE_0066)
Protocatechuate 3,4-dioxygenase alpha subunitRmet_4014
PCAH
(NRULE_0067)
Protocatechuate 3,4-dioxygenase beta subunitRmet_4013
PCAB
(NRULE_0068)
3-carboxy-cis,cis-muconate cycloisomeraseRmet_4015
PCAC
(NRULE_0069)
4-carboxymuconolactone decarboxylaseRmet_4016
PCAD
(NRULE_0070)
3-oxoadipate enol-lactonaseRmet_4875 Rmet_4016 Rmet_4676 Rmet_0084
PCAI
(NRULE_0072)
3-oxoadipate CoA-transferase subunit ARmet_3667 Rmet_5059
PCAJ
(NRULE_0073)
3-oxoadipate CoA-transferase subunit BRmet_3668 Rmet_5060
PCAF
(NRULE_0074)
Beta-ketoadipyl-CoA thiolaseRmet_3669
B
PCAG
(NRULE_0066)
Protocatechuate 3,4-dioxygenase alpha subunitRmet_4014
PCAH
(NRULE_0067)
Protocatechuate 3,4-dioxygenase beta subunitRmet_4013
PCAB
(NRULE_0068)
3-carboxy-cis,cis-muconate cycloisomeraseRmet_4015
PCAL
(NRULE_0071)
3-oxoadipate enol-lactone hydrolase/4-carboxymuconolactone decarboxylaseRmet_4016
PCAI
(NRULE_0072)
3-oxoadipate CoA-transferase subunit ARmet_3667 Rmet_5059
PCAJ
(NRULE_0073)
3-oxoadipate CoA-transferase subunit BRmet_5060 Rmet_3668
PCAF
(NRULE_0074)
Beta-ketoadipyl-CoA thiolaseRmet_3669
Riboflavin biosynthesis(NFUNC_0058)
RequireA
RIBB
(NRULE_0200)
3,4-dihydroxy-2-butanone 4-phosphate synthaseRmet_2693 Rmet_4758
RIBA
(NRULE_0201)
GTP cyclohydrolase-2Rmet_4572 Rmet_0194 Rmet_2693
RIBD
(NRULE_0202)
Riboflavin biosynthesis protein RibDRmet_2688
RIBH
(NRULE_0203)
6,7-dimethyl-8-ribityllumazine synthaseRmet_2694
RIBE
(NRULE_0204)
Riboflavin synthaseRmet_2689
Participant 
RIBF
(NRULE_0205)
Riboflavin biosynthesis protein RibFRmet_2884
Trehalose biosynthesis (from NDP-glucose and glucose-6-phosphate)(NFUNC_0031)
RequireA
TPS
(NRULE_0119)
Trehalose-phosphate synthaseRmet_0357
TPP
(NRULE_0120)
Trehalose-6-phosphate phosphataseRmet_0355

Genomic Overview

BioProject IDPRJNA250
Locus_tagRMET
INSDC entriesCP000352
Sequence statusComplete
Current status
Contig number4
Size(bp) 6,913,352
Gene 6,488
Finishing goal
Assembly method
Coverage
Technology
Reference

Data Download

Genomic nucleotide sequence Nucleotide sequence of the coding regions Translation of the coding sequneces List of genes / ORFs
FASTA
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FASTA
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FASTA
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TSV
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2.0 MB 1.9 MB 1.3 MB 595.5 KB