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微生物 : Cupriavidus metallidurans

微生物株情報

NBRC番号 102507
学名 Cupriavidus metallidurans
別名（シノニム） Ralstonia metallidurans
Wautersia metallidurans
由来 IAM 14785 <- H. Kim, CH34
他保存機関番号 ATCC 43123=CCUG 13724=CCUG 38400=CIP 107179=DSM 2839=IAM 14785=JCM 21315=KCTC 12956=LMG 1195
他株番号 CH34
参考文献
11594608
Classification of metal-resistant bacteria from industrial biotopes as Ralstonia campinensis sp. nov., Ralstonia metallidurans sp. nov. and Ralstonia basilensis Steinle et al. 1998 emend. (Int J Syst Evol Microbiol. 2001)
15023939
Wautersia gen. nov., a novel genus accommodating the phylogenetic lineage including Ralstonia eutropha and related species, and proposal of Ralstonia [Pseudomonas] syzygii (Roberts et al. 1990) comb. nov. (Int J Syst Evol Microbiol. 2004)
15545472
Taxonomy of the genus Cupriavidus: a tale of lost and found. (Int J Syst Evol Microbiol. 2004)

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タイプパターン 構成遺伝子 該当CDS
Alanine racemization(NFUNC_0063)
必須A
ALR
(NRULE_0228)
Alanine racemaseRmet_1400
n-alkane hydroxylation(NFUNC_0008)
必須C
MMA
(NRULE_0027)
Multicomponent monooxygenase alpha subunitRmet_1312 Rmet_1316 Rmet_1328 Rmet_1784 Rmet_1330 Rmet_1786
MMB
(NRULE_0028)
Multicomponent monooxygenase beta subunitRmet_1316 Rmet_1786 Rmet_1784 Rmet_1330 Rmet_1328 Rmet_1312
FDR1
(NRULE_0032)
Oxygenase electron transfer componentRmet_1326 Rmet_1311 Rmet_3373 Rmet_3630 Rmet_4884 Rmet_4932 Rmet_5517 Rmet_5549 Rmet_0543 Rmet_1782 Rmet_2861
MME
(NRULE_0033)
Multicomponent monooxygenase effector proteinRmet_1313 Rmet_1785 Rmet_1329
任意 
RUBA
(NRULE_0039)
RubredoxinRmet_3710 Rmet_0668 Rmet_1289 Rmet_3952
 
MMG1
(NRULE_0029)
Multicomponent monooxygenase gamma subunitRmet_1327 Rmet_1783
 
MMG2
(NRULE_0030)
Multicomponent monooxygenase gamma subunitRmet_1315
 
FDX1
(NRULE_0034)
Putative Rieske-type ferredoxinRmet_1812 Rmet_5546 Rmet_4882 Rmet_3230 Rmet_2618 Rmet_2437 Rmet_1314 Rmet_5548
Anthranilate biosynthesis(NFUNC_0038)
必須A
GLAT
(NRULE_0142)
Glutamine amidotransferaseRmet_3179
TRPE
(NRULE_0143)
Anthranilate synthase component IRmet_3178
Arginine degradation(NFUNC_0074)
必須A
ARGI
(NRULE_0239)
ArginaseRmet_3926
Aromatic azo compounds degradation(NFUNC_0073)
必須A
AZOR
(NRULE_0236)
FMN-dependent NADH-azoreductaseRmet_1590 Rmet_3438
Arsenical resistance(NFUNC_0004)
必須D
ARSB2
(NRULE_0016)
Arsenite resistance protein ArsBRmet_0330
ARSC1
(NRULE_0017)
Arsenate reductaseRmet_0329 Rmet_3436
E
ARSB2
(NRULE_0016)
Arsenite resistance protein ArsBRmet_0330
ARSC2
(NRULE_0018)
Arsenate reductaseRmet_0331
任意 
ARSH
(NRULE_0021)
ArsH proteinRmet_0328
Bacitracin resistance(NFUNC_0022)
必須A
UPPP
(NRULE_0097)
Undecaprenyl-diphosphataseRmet_2705
Benzoate degradation (via hydroxylation by dioxygenase)(NFUNC_0017)
必須A
BENA
(NRULE_0046)
Benzoate 1,2-dioxygenase alpha subunitRmet_4882
BENB
(NRULE_0047)
Benzoate 1,2-dioxygenase beta subunitRmet_4883
BEND
(NRULE_0082)
1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenaseRmet_4885
任意 
BENC
(NRULE_0055)
Benzoate 1,2-dioxygenase electron transfer componentRmet_4884
 
FDR1
(NRULE_0032)
Oxygenase electron transfer componentRmet_0543 Rmet_4932 Rmet_4884 Rmet_3630 Rmet_3373 Rmet_2861 Rmet_1782 Rmet_1326 Rmet_1311 Rmet_5549 Rmet_5517
 
FDX1
(NRULE_0034)
Putative Rieske-type ferredoxinRmet_2437 Rmet_2618 Rmet_3230 Rmet_4882 Rmet_5546 Rmet_1812 Rmet_5548 Rmet_1314
Beta-lactam antibiotic resistance(NFUNC_0033)
必須C
BLAC
(NRULE_0124)
Beta-lactamase class CRmet_1776
Bioplastic degradation(NFUNC_0015)
必須A
PHAZ1
(NRULE_0023)
Intracellular poly(3-hydroxyalkanoate) depolymeraseRmet_2701 Rmet_1017
B
PHAZ2
(NRULE_0080)
Poly(3-hydroxyalkanoate) depolymeraseRmet_3823
任意 
PHAY
(NRULE_0022)
D-(-)-3-hydroxybutyrate oligomer hydrolaseRmet_1960
Bioplastic synthesis(NFUNC_0001)
必須A
PHAC1
(NRULE_0010)
Poly(3-hydroxyalkanoate) polymeraseRmet_1671 Rmet_1356
任意 
PHAB
(NRULE_0011)
Acetoacetyl-CoA reductaseRmet_5123 Rmet_1333 Rmet_1358
 
PHAP1
(NRULE_0374)
PhasinRmet_1200 Rmet_5043
Catechol degradation (beta-ketoadipate pathway)(NFUNC_0013)
必須A
CATA
(NRULE_0052)
Catechol 1,2-dioxygenaseRmet_4881 Rmet_1781
CATB2
(NRULE_0053)
(Chloro)muconate cycloisomeraseRmet_4878
CATC
(NRULE_0054)
Muconolactone isomeraseRmet_4677 Rmet_4877
PCAD
(NRULE_0070)
3-oxoadipate enol-lactonaseRmet_4016 Rmet_4676 Rmet_4875 Rmet_0084
PCAI
(NRULE_0072)
3-oxoadipate CoA-transferase subunit ARmet_5059 Rmet_3667
PCAJ
(NRULE_0073)
3-oxoadipate CoA-transferase subunit BRmet_5060 Rmet_3668
PCAF
(NRULE_0074)
Beta-ketoadipyl-CoA thiolaseRmet_3669
B
CATA
(NRULE_0052)
Catechol 1,2-dioxygenaseRmet_1781 Rmet_4881
CATC
(NRULE_0054)
Muconolactone isomeraseRmet_4877 Rmet_4677
PCAD
(NRULE_0070)
3-oxoadipate enol-lactonaseRmet_4676 Rmet_4875 Rmet_0084 Rmet_4016
PCAI
(NRULE_0072)
3-oxoadipate CoA-transferase subunit ARmet_3667 Rmet_5059
PCAJ
(NRULE_0073)
3-oxoadipate CoA-transferase subunit BRmet_3668 Rmet_5060
PCAF
(NRULE_0074)
Beta-ketoadipyl-CoA thiolaseRmet_3669
CATB1
(NRULE_0386)
Muconate cycloisomeraseRmet_4878
C
CATA
(NRULE_0052)
Catechol 1,2-dioxygenaseRmet_1781 Rmet_4881
CATC
(NRULE_0054)
Muconolactone isomeraseRmet_4677 Rmet_4877
PCAL
(NRULE_0071)
3-oxoadipate enol-lactone hydrolase/4-carboxymuconolactone decarboxylaseRmet_4016
PCAI
(NRULE_0072)
3-oxoadipate CoA-transferase subunit ARmet_5059 Rmet_3667
PCAJ
(NRULE_0073)
3-oxoadipate CoA-transferase subunit BRmet_3668 Rmet_5060
PCAF
(NRULE_0074)
Beta-ketoadipyl-CoA thiolaseRmet_3669
CATB1
(NRULE_0386)
Muconate cycloisomeraseRmet_4878
D
CATA
(NRULE_0052)
Catechol 1,2-dioxygenaseRmet_1781 Rmet_4881
CATB2
(NRULE_0053)
(Chloro)muconate cycloisomeraseRmet_4878
CATC
(NRULE_0054)
Muconolactone isomeraseRmet_4677 Rmet_4877
PCAL
(NRULE_0071)
3-oxoadipate enol-lactone hydrolase/4-carboxymuconolactone decarboxylaseRmet_4016
PCAI
(NRULE_0072)
3-oxoadipate CoA-transferase subunit ARmet_5059 Rmet_3667
PCAJ
(NRULE_0073)
3-oxoadipate CoA-transferase subunit BRmet_3668 Rmet_5060
PCAF
(NRULE_0074)
Beta-ketoadipyl-CoA thiolaseRmet_3669
Cephalosporin resistance(NFUNC_0048)
必須A
BLAC
(NRULE_0124)
Beta-lactamase class CRmet_1776
Dihydroxy aromatic compounds degradation (via meta-cleavage pathway)(NFUNC_0011)
必須A
EDIO
(NRULE_0058)
extradiol dioxygenaseRmet_1324 Rmet_3709 Rmet_3401
METAH
(NRULE_0059)
meta-cleavage compound hydrolaseRmet_1306
HPDH
(NRULE_0063)
2-hydroxypent-2,4-dienoate hydrataseRmet_1321
HOA
(NRULE_0064)
4-hydroxy-2-oxovalerate aldolaseRmet_5209 Rmet_1319
ACDH
(NRULE_0065)
Acetaldehyde dehydrogenaseRmet_5208 Rmet_1320
B
EDIO
(NRULE_0058)
extradiol dioxygenaseRmet_3401 Rmet_1324 Rmet_3709
2HMSD
(NRULE_0060)
2-hydroxymuconic semialdehyde dehydrogenaseRmet_5206 Rmet_1322
4OT
(NRULE_0061)
4-oxalocrotonate tautomeraseRmet_1317 Rmet_0808
4OD
(NRULE_0062)
4-oxalocrotonate decarboxylaseRmet_1318
HPDH
(NRULE_0063)
2-hydroxypent-2,4-dienoate hydrataseRmet_1321
HOA
(NRULE_0064)
4-hydroxy-2-oxovalerate aldolaseRmet_1319 Rmet_5209
ACDH
(NRULE_0065)
Acetaldehyde dehydrogenaseRmet_1320 Rmet_5208
GABA biosynthesis(NFUNC_0066)
必須A
GAD
(NRULE_0231)
Glutamate decarboxylaseRmet_1766
Mercury resistance(NFUNC_0005)
必須A
MERA
(NRULE_0008)
Mercuric reductaseRmet_6183 Rmet_6174
Metal-binding protein(NFUNC_0105)
必須A
MOP
(NRULE_0322)
Putative molybdenum-binding proteinRmet_2234 Rmet_5121 Rmet_0567
B
MODE
(NRULE_0323)
Putative molybdate-dependent transcriptional regulatorRmet_0567
C
MODA
(NRULE_0324)
Molybdate ABC transporter substrate-binding proteinRmet_0571
E
CUER
(NRULE_0328)
Copper-responsive transcriptional regulator CueRRmet_3523
F
SOXR
(NRULE_0329)
Redox-sensitive transcriptional activator SoxRRmet_4538
I
ISCR
(NRULE_0332)
Rrf2 family transcriptional regulator IscRRmet_1024
Molybdate transport (ABC transporter)(NFUNC_0097)
必須A
MODA
(NRULE_0324)
Molybdate ABC transporter substrate-binding proteinRmet_0571
任意 
MODE
(NRULE_0323)
Putative molybdate-dependent transcriptional regulatorRmet_0567
 
MODB
(NRULE_0325)
Molybdate ABC transporter permease proteinRmet_0570
Phenol degradation(NFUNC_0028)
必須A
MMA
(NRULE_0027)
Multicomponent monooxygenase alpha subunitRmet_1328 Rmet_1330 Rmet_1784 Rmet_1786 Rmet_1316 Rmet_1312
MMB
(NRULE_0028)
Multicomponent monooxygenase beta subunitRmet_1786 Rmet_1312 Rmet_1316 Rmet_1328 Rmet_1330 Rmet_1784
MMG1
(NRULE_0029)
Multicomponent monooxygenase gamma subunitRmet_1327 Rmet_1783
任意 
FDR1
(NRULE_0032)
Oxygenase electron transfer componentRmet_1782 Rmet_1326 Rmet_1311 Rmet_0543 Rmet_5549 Rmet_4932 Rmet_5517 Rmet_4884 Rmet_3630 Rmet_3373 Rmet_2861
 
MME
(NRULE_0033)
Multicomponent monooxygenase effector proteinRmet_1785 Rmet_1329 Rmet_1313
 
FDX1
(NRULE_0034)
Putative Rieske-type ferredoxinRmet_5548 Rmet_5546 Rmet_4882 Rmet_3230 Rmet_2618 Rmet_2437 Rmet_1812 Rmet_1314
 
FADR1
(NRULE_0101)
NADH-dependent flavin reductaseRmet_2646 Rmet_2978 Rmet_3318
Protocatechuate degradation (beta-ketoadipate pathway)(NFUNC_0014)
必須A
PCAG
(NRULE_0066)
Protocatechuate 3,4-dioxygenase alpha subunitRmet_4014
PCAH
(NRULE_0067)
Protocatechuate 3,4-dioxygenase beta subunitRmet_4013
PCAB
(NRULE_0068)
3-carboxy-cis,cis-muconate cycloisomeraseRmet_4015
PCAC
(NRULE_0069)
4-carboxymuconolactone decarboxylaseRmet_4016
PCAD
(NRULE_0070)
3-oxoadipate enol-lactonaseRmet_4875 Rmet_4016 Rmet_4676 Rmet_0084
PCAI
(NRULE_0072)
3-oxoadipate CoA-transferase subunit ARmet_3667 Rmet_5059
PCAJ
(NRULE_0073)
3-oxoadipate CoA-transferase subunit BRmet_3668 Rmet_5060
PCAF
(NRULE_0074)
Beta-ketoadipyl-CoA thiolaseRmet_3669
B
PCAG
(NRULE_0066)
Protocatechuate 3,4-dioxygenase alpha subunitRmet_4014
PCAH
(NRULE_0067)
Protocatechuate 3,4-dioxygenase beta subunitRmet_4013
PCAB
(NRULE_0068)
3-carboxy-cis,cis-muconate cycloisomeraseRmet_4015
PCAL
(NRULE_0071)
3-oxoadipate enol-lactone hydrolase/4-carboxymuconolactone decarboxylaseRmet_4016
PCAI
(NRULE_0072)
3-oxoadipate CoA-transferase subunit ARmet_3667 Rmet_5059
PCAJ
(NRULE_0073)
3-oxoadipate CoA-transferase subunit BRmet_5060 Rmet_3668
PCAF
(NRULE_0074)
Beta-ketoadipyl-CoA thiolaseRmet_3669
Riboflavin biosynthesis(NFUNC_0058)
必須A
RIBB
(NRULE_0200)
3,4-dihydroxy-2-butanone 4-phosphate synthaseRmet_2693 Rmet_4758
RIBA
(NRULE_0201)
GTP cyclohydrolase-2Rmet_4572 Rmet_0194 Rmet_2693
RIBD
(NRULE_0202)
Riboflavin biosynthesis protein RibDRmet_2688
RIBH
(NRULE_0203)
6,7-dimethyl-8-ribityllumazine synthaseRmet_2694
RIBE
(NRULE_0204)
Riboflavin synthaseRmet_2689
任意 
RIBF
(NRULE_0205)
Riboflavin biosynthesis protein RibFRmet_2884
Trehalose biosynthesis (from NDP-glucose and glucose-6-phosphate)(NFUNC_0031)
必須A
TPS
(NRULE_0119)
Trehalose-phosphate synthaseRmet_0357
TPP
(NRULE_0120)
Trehalose-6-phosphate phosphataseRmet_0355

ゲノム配列情報

BioProject IDPRJNA250
ローカスタグRMET
INSDC entriesCP000352
ステータスComplete
解析状況
コンティグ数4
サイズ(bp) 6,913,352
遺伝子数 6,488
フィニッシングゴール
アセンブル方法
冗長度
シーケンス方法
参考文献

データダウンロード

ゲノム塩基配列 CDS塩基配列 CDSアミノ酸変換配列 遺伝子/ORF リスト
FASTA
gz		 FASTA
gz		 FASTA
gz		 TSV
uncompressed
2.0 MB 1.9 MB 1.3 MB 595.5 KB