| Echinicola rosea | 111782T |
| Echinodontium japonicum | 30308, 30309 |
| Echinodontium taxodii | 9476 |
| Echinopodospora effusa | 30862T |
| Echinopodospora jamaicensis | 9819, 30406, 30407 |
| Echinopodospora spinosa | 30251 |
| Echinopodospora vermicularis | 30863T |
| Echinopodospora verruculosa | 30250 |
| Ectobacillus polymachus | 110614T |
| Ectobacillus ponti | 115614T |
| Ectopseudomonas pseudoalcaligenes | 14167T |
| Ectothiorhodospira mobilis | 103802T |
| Ectothiorhodospira salini | 105915T |
| Edaphobacter bradus | 113250T |
| Edaphobacter flagellatus | 113251T |
| Edwardsiella hoshinae | 105699T |
| Edwardsiella ictaluri | 105724T |
| Edwardsiella sp. | 12716, 12717 |
| Edwardsiella tarda | 105688T |
| Effusibacillus lacus | 109614T |
| Eichleriella leucophaea | 32427, 32428, 32429 |
| Eionea flava | 109703T |
| Eisenibacter elegans | 15055T |
| Elaphocordyceps sp. | 109004 |
| Eleutherascus lectardii | 30531, 30532, 30533, 30534, 30799T, 32900 |
| Eleutherascus peruvianus | 30292, 30437, 32697, 32886 |
| Elioraea rosea | 113984T |
| Elizabethkingia meningoseptica | 12535T |
| Elliptochloris subsphaerica (class: Trebouxiophyceae) | 113303 |
| Ellisembia adscendens | 104941 |
| Ellisembia brachypus | 104942 |
| Ellisomyces anomalus | 6151T |
| Elongisporangium senticosum | 104222T |
| Elongisporangium sp. | 103814 |
| Elsinoe ampelina | 5263, 6359, 9764 |
| Elsinoe araliae | 6166, 7162 |
| Elsinoe fawcetti | 6442, 8417 |
| Embleya hyalina | 13850T |
| Embleya scabrispora | 100760T |
| Emericella aurantiobrunnea | 32387 |
| Emericella bicolor | 30838T |
| Emericella cleistominuta | 30839T |
| Emericella desertorum | 30840T |
| Emericella heterothallica | 30842 |
| Emericella navahoensis | 30836T |
| Emericella nidulans | 33017 |
| Emericella nidulans var. acristata | 30063, 30844T, 31887 |
| Emericella nidulans var. dentata | 30845T, 30846, 30907, 30908, 30909, 30910 |
| Emericella nidulans var. echinulata | 30248, 30412, 30896 |
| Emericella nidulans var. lata | 30847T |
| Emericella nidulans var. nidulans | 4340, 4342, 5719, 6083, 6398, 6577, 7077, 8001, 8002, 8630, 9852, 30062, 30872, 31837 |
| Emericella olivicola | 32299T, 32303 |
| Emericella parvathecia | 30848T, 110164 |
| Emericella pluriseminata | 33028T |
| Emericella purpurea | 30849T |
| Emericella quadrilineata | 5859, 30850T, 30851, 30911, 30912, 32223 |
| Emericella rugulosa | 5865, 8626, 8629, 30852, 30853, 30913, 32224, 32887, 32888 |
| Emericella spectabilis | 30854T |
| Emericella striata | 30856 |
| Emericella sublata | 30906T |
| Emericella unguis | 8087, 30857T |
| Emericella variecolor var. variecolor | 30855, 31666, 32051, 32052, 32302T |
| Emericella violacea | 8106 |
| Emericellopsis donezkii | 9814 |
| Emericellopsis glabra | 9031, 9033, 9034, 32981 |
| Emericellopsis humicola | 8518 |
| Emericellopsis maritima | 9603 |
| Emericellopsis microspora | 8614, 9035, 9037, 9241 |
| Emericellopsis minima | 7891, 8384, 9038, 9039, 9046 |
| Emericellopsis mirabilis | 9040, 114971, 114972 |
| Emericellopsis pallida | 9815 |
| Emericellopsis pusilla | 9125 |
| Emericellopsis robusta | 9509 |
| Emericellopsis salmosynnemata | 8517, 9239T |
| Emericellopsis stolkiae | 9604 |
| Emericellopsis synnematicola | 8519, 9042T, 33065 |
| Emericellopsis synnematicola var. magna | 9160 |
| Emericellopsis terricola | 7898, 8099, 9126 |
| Emiliania huxleyi (class: Haptophyceae) | 102827, 102993 |
| Emmia lacerata | 113729 |
| Emmonsia parva var. crescens | 7585 |
| Empedobacter brevis | 14943T |
| Empedobacter tilapiae | 113550T |
| Emticicia fontis | 109486T |
| Emticicia ginsengisoli | 108618, 108621 |
| Emticicia paludis | 111886T |
| Endocalyx cinctus | 31306 |
| Endocalyx grossus | 31308T, 31309, 31310, 31311, 31312, 31313, 31314 |
| Endocalyx indumentum | 31307T |
| Endocalyx melanoxanthus | 31298, 31299, 31300, 31301, 31302, 31303, 31305 |
| Endophragmia dimorphospora | 9986, 33233 |
| Endophragmia hyalosperma | 9177, 30805, 100451 |
| Endophragmia microaquatica | 100616, 100623 |
| Endophragmiella pinicola | 100227 |
| Endophragmiella uniseptata | 100401 |
| Endosaccharibacter trunci | 115232T |
| Endozoicomonas numazuensis | 108893T |
| Ensifer adhaerens | 100387, 100388T, 108628, 109443, 109444 |
| Ensifer americanus | 107163T |
| Ensifer arboris | 100383T |
| Ensifer fredii | 14780T, 100018 |
| Ensifer garamanticus | 107849T |
| Ensifer kostiensis | 100382T |
| Ensifer medicae | 100384T |
| Ensifer meliloti | 14782T |
| Ensifer saheli | 100386T |
| Ensifer sp. | 101917, 101918, 101919, 101920, 101921, 101922, 101923, 101924, 101925, 101926, 101927, 101928, 101929, 101930, 101931, 101932, 101933, 101934, 101935, 101936, 101937, 101938, 101939, 101940, 101941, 101942, 101943, 101944, 101945, 101946, 101947, 101948, 101949, 101950, 101951, 101952, 101954, 101955, 101956, 101957, 101959, 101960, 101961, 101962, 102043, 102044, 102045, 102046, 102047, 102459, 106176, 106177, 106178, 106179, 106180, 106181, 106182, 106183, 106184, 106185, 106190, 106191, 106192, 106193, 106209, 106210, 109340 |
| Ensifer terangae | 100385T |
| Enterobacter asburiae | 109912T, 113043 |
| Enterobacter cancerogenus | 105713 |
| Enterobacter cloacae | 3320, 12935, 12937, 13536 |
| Enterobacter cloacae subsp. cloacae | 13535T |
| Enterobacter cloacae subsp. rugosum | 102198 |
| Enterobacter hormaechei | 105718T |
| Enterobacter siamensis | 107138T |
| Enterobacter sichuanensis | 103869 |
| Enterocloster clostridioformis | 113352 |
| Enterococcus alishanensis | 109593T |
| Enterococcus asini | 100681T |
| Enterococcus avium | 100477T |
| Enterococcus camelliae | 101868T |
| Enterococcus canis | 100695T |
| Enterococcus casseliflavus | 3531, 12256, 13138, 100478T, 100679, 114777 |
| Enterococcus cecorum | 100674T |
| Enterococcus columbae | 100677T |
| Enterococcus dispar | 100678T |
| Enterococcus durans | 13131, 100479T |
| Enterococcus faecalis | 3971, 3989, 12580, 12964, 12965, 12966, 12967, 12968, 12969, 12970, 100480T, 100481T, 100482, 100483, 100484, 116150 |
| Enterococcus faecium | 3535, 100485T, 100486T, 100487, 100488, 100602, 113009 |
| Enterococcus florum | 111461T |
| Enterococcus gallinarum | 100675T, 111700 |
| Enterococcus gilvus | 100696T |
| Enterococcus haemoperoxidus | 100709T |
| Enterococcus hirae | 3128, 3181T, 3826, 113010 |
| Enterococcus italicus | 107825T |
| Enterococcus malodoratus | 100489T |
| Enterococcus moraviensis | 100710T |
| Enterococcus mundtii | 12366, 12367, 12368, 13712, 100490T |
| Enterococcus pallens | 100697T |
| Enterococcus phoeniculicola | 100711T |
| Enterococcus pseudoavium | 100491T |
| Enterococcus raffinosus | 100492T |
| Enterococcus ratti | 100698T |
| Enterococcus saccharolyticus subsp. saccharolyticus | 100493T |
| Enterococcus saccharolyticus subsp. taiwanensis | 109476T |
| Enterococcus sp. | 3427, 12225, 12546, 105208, 106002, 106003, 106018, 106023, 106027, 107176, 107189, 107190, 107206, 107209, 107225, 107231, 107241, 107243, 107247, 107248, 107251, 107277, 107278, 107280, 107281, 107291, 107296, 107303, 107317, 107319, 107322, 107344, 107345, 108292, 108297, 108299, 108301, 108304, 108317, 108321, 108322, 108356, 108365, 108369, 108376, 108378, 108401, 108405, 108406, 108452, 108462, 108463, 108501, 108531, 108545, 112049, 115207, 115208 |
| Enterococcus sulfureus | 100680T |
| Enterococcus thailandicus | 101867T |
| Enterococcus villorum | 100699T |
| Enterovibrio paralichthyis | 115237T |
| Enterovirga sp. | 114759 |
| Entomosporium mespili | 9932, 9933, 30202, 33221 |
| Entophlyctis sp. | 103822 |
| Ephemeroascus verticillatus | 9989T |
| Epibacterium mobile | 101030T, 102038 |
| Epichloe typhina | 32648 |
| Epicoccum nigrum | 102302 |
| Epicoccum purpurascens | 4590, 7808, 30392, 32858, 100099, 100563 |
| Epidermophyton floccosum | 9045, 32461 |
| Eremascus albus | 10811 |
| Eremascus fertilis | 0691, 10812 |
| Eremothecium ashbyi | 0557, 0944, 0952, 103099, 103100, 103101 |
| Eremothecium coryli | 0658, 1220T, 102356, 102357, 105634 |
| Eremothecium gossypii | 0560, 1355 |
| Eremothecium sp. | 105635 |
| Erioscyphella abnormis | 113934 |
| Erwinia amylovora | 12687T |
| Erwinia aphidicola | 102417T |
| Erwinia persicina | 102418T |
| Erythrobacter alti | 111903T |
| Erythrobacter aquimixticola | 112765T |
| Erythrobacter insulae | 113584T |
| Erythrobacter litoralis | 102620T |
| Erythrobacter longus | 14126T |
| Erythrobacter marisflavi | 113546T |
| Erythrobacter odishensis | 108930T |
| Erythrobacter rubeus | 115159T |
| Erythrobacter sp. | 101023, 109117, 114357 |
| Erythrobasidium hasegawianum | 1058T |
| Erythromicrobium ramosum | 102621T |
| Erythromyces crocicreas | 106847 |
| Escherichia albertii | 107761T |
| Escherichia coli | 3301, 3302, 3366, 3543, 3544, 3545, 3546, 3547, 3548, 3549, 3806, 3972, 3991, 3992, 3993, 12062, 12433, 12713, 12734, 13168, 13500, 13540, 13891, 13892, 13893, 13898, 13965, 13966, 14129, 14195, 14196, 14197, 14236, 14237, 14249, 14360, 14410, 14571, 14605, 15034, 15044, 15484, 102203T, 103403, 103404, 106051, 106373, 106482, 108645, 108646, 108647, 108648, 108649, 108650, 108651, 108652, 108653, 108654, 108655, 108656, 108657, 108658, 108659, 108660, 108661, 108662, 108663, 108664, 108665, 108666, 108667, 108668, 108669, 108670, 108896, 109111, 109784, 110617, 110618, 110754, 110755, 110756, 110757, 110758, 110759, 112069, 112070, 112465, 112466, 112975, 113457, 113503, 113504, 113505, 113506, 113507, 113508, 114657, 115997 |
| Escherichia coli phage 434 | 20018 |
| Escherichia coli phage 82 | 20019 |
| Escherichia coli phage BO1 | 109534 |
| Escherichia coli phage BZ1 | 109530 |
| Escherichia coli phage BZ13 | 109531 |
| Escherichia coli phage f1 | 20010, 20015 |
| Escherichia coli phage f2 | 20011 |
| Escherichia coli phage FI | 109525 |
| Escherichia coli phage GH1 | 109538 |
| Escherichia coli phage ID2 | 109536 |
| Escherichia coli phage JP34 | 109532 |
| Escherichia coli phage JP501 | 109508 |
| Escherichia coli phage JSAT13-2-Bp001 | 111355 |
| Escherichia coli phage JSAT13-2-Bp006 | 111356 |
| Escherichia coli phage JSAT13-2-Bp007A | 111357 |
| Escherichia coli phage JSAT13-2-Bp007C | 111358 |
| Escherichia coli phage JSAT13-2-Bp008 | 111359 |
| Escherichia coli phage JSAT14-2-Bp001A | 111360 |
| Escherichia coli phage JSAT14-2-Bp001B | 111361 |
| Escherichia coli phage KU1 | 109535 |
| Escherichia coli phage M12 | 20014 |
| Escherichia coli phage MD1 | 109539 |
| Escherichia coli phage MS2 | 102619 |
| Escherichia coli phage MX1 | 109533 |
| Escherichia coli phage P1kc | 20008 |
| Escherichia coli phage PR772 | 105897 |
| Escherichia coli phage Qβ | 20012, 109505 |
| Escherichia coli phage SG10 | 109537 |
| Escherichia coli phage SP | 109507 |
| Escherichia coli phage ST | 109524 |
| Escherichia coli phage T1 | 20001, 20009 |
| Escherichia coli phage T2 | 20002 |
| Escherichia coli phage T3 | 20003 |
| Escherichia coli phage T4 | 20004 |
| Escherichia coli phage T5 | 20005 |
| Escherichia coli phage T6 | 20006 |
| Escherichia coli phage T7 | 20007 |
| Escherichia coli phage TH1 | 109529 |
| Escherichia coli phage TW14 | 109526 |
| Escherichia coli phage TW19 | 109527 |
| Escherichia coli phage TW28 | 109528 |
| Escherichia coli phage VK | 109523 |
| Escherichia coli phage λ | 20016 |
| Escherichia coli phage λvir | 20017 |
| Escherichia coli phage τ | 20071 |
| Escherichia coli phage φ170 | 20021 |
| Escherichia coli phage φ170 vir | 20063 |
| Escherichia coli phage φ80 | 20020 |
| Escherichia coli phage φX174 | 103405 |
| Escherichia coli phage φX174 cs70 | 20065 |
| Escherichia fergusonii | 102419T |
| Escherichia hermannii | 105704T |
| Escherichia sp. | 13921 |
| Eubacterium limosum | 114520 |
| Eudarluca biconica | 32539, 33070, 33071 |
| Euglena mutabilis (Class: Euglenophyceae) | 105740, 105741, 105742 |
| Eupenicillium baarnense | 6090, 8846, 8926, 8927, 8973 |
| Eupenicillium brefeldianum | 6091, 7003, 8393, 8394, 8945, 106929 |
| Eupenicillium caperatum | 9697 |
| Eupenicillium catenatum | 9512, 9577T, 31774T |
| Eupenicillium cinnamopurpureum | 6245, 7764, 9029, 9833 |
| Eupenicillium erubescens | 9153, 9711, 31734T |
| Eupenicillium euglaucum | 6049, 6050, 6051, 6435T, 7991, 9154T, 9155T, 9511T, 31729T, 31736T |
| Eupenicillium fractum | 9023T |
| Eupenicillium gracilentum | 9699T, 9704 |
| Eupenicillium javanicum var. javanicum | 6095T, 7992, 7994, 7995, 7996, 7997, 7998, 7999, 8848T, 9030T, 31368, 31369, 31735T, 32889 |
| Eupenicillium lapidosum | 9700, 9701, 105987 |
| Eupenicillium levitum | 6101T, 8849T |
| Eupenicillium luzoniacum | 9713 |
| Eupenicillium molle | 9605T |
| Eupenicillium ochrosalmoneum | 6436T, 9027, 9028, 9717, 9718, 9838, 31739T, 31838 |
| Eupenicillium parvum | 8000, 8925, 9698, 9702T, 9707, 31808 |
| Eupenicillium philippinense | 9719 |
| Eupenicillium pinetorum | 7743T, 7929, 8174T, 8900, 8901, 8902, 8903, 8904, 8905, 31888 |
| Eupenicillium reticulisporum | 9022, 9024, 9026 |
| Eupenicillium senticosum | 9158T |
| Eupenicillium shearii | 8837, 8944, 9710, 31889 |
| Europhium trinacriforme | 9640 |
| Eurotium amstelodami | 4028, 5721, 5817, 6667, 31389, 33018T |
| Eurotium halophilicum | 8156 |
| Eurotium herbariorum | 33235, 107902 |
| Eurotium repens | 4041, 4087, 4332, 4333, 4356, 4884, 4885, 5843, 6005, 7463, 7682, 8914, 31809, 31891, 112072 |
| Eurotium rubrum | 4089, 4326, 6004, 6630, 7712 |
| Eurotium umbrosum | 8207 |
| Eustigmatos sp. (class: Eustigmatophyceae) | 113208, 113210 |
| Euzebya tangerina | 105439T |
| Euzebyella sp. | 114487 |
| Exanthemachrysis gayraliae (class: Haptophyceae) | 102911 |
| Exidia glandulosa | 114707 |
| Exidia uvapassa | 114708 |
| Exidiopsis plumbescens | 32430 |
| Exiguobacterium acetylicum | 12146T |
| Exiguobacterium aurantiacum | 14763T |
| Exiguobacterium indicum | 114977 |
| Exiguobacterium sp. | 101642, 101643, 101644, 101647, 101652, 101653, 113665 |
| Exilispira thermophila | 103205T |
| Exobasidium bisporum | 9942, 30152 |
| Exobasidium camelliae | 107798 |
| Exobasidium cylindrosporum | 9958, 32402, 32403, 32414 |
| Exobasidium gracile | 7788, 7789, 9963, 30814, 30815 |
| Exobasidium hachijoense | 31857T |
| Exobasidium japonicum | 7791, 9956, 9957, 30756, 32404 |
| Exobasidium pentasporium | 32460 |
| Exobasidium pieridis | 32405 |
| Exobasidium pieridis-ovalifoliae | 9961, 32406 |
| Exobasidium reticulatum | 30393, 30394, 103645 |
| Exobasidium shiraianum | 30151 |
| Exobasidium symploci-japonicae | 7790 |
| Exobasidium vexans | 32413 |
| Exobasidium yoshinagai | 9959 |
| Exophiala alcalophila | 113475 |
| Exophiala cancerae | 114589 |
| Exophiala dermatitidis | 6421T, 6857, 8193, 8194, 8195, 114590, 114591 |
| Exophiala equina | 114571 |
| Exophiala hongkongensis | 109366T |
| Exophiala jeanselmei | 6858, 6860, 6862, 6864, 6867, 6868, 6869 |
| Exophiala lecanii-corni | 111836, 114587 |
| Exophiala mansonii | 5982, 9233, 9449 |
| Exophiala oligosperma | 6859, 6861, 6863, 6866, 6880 |
| Exophiala pisciphila | 114588 |
| Exophiala xenobiotica | 115858 |
| Exserohilum monoceras | 100161, 100162, 100163 |
| Exserticlava triseptata | 32662 |
| Exserticlava vasiformis | 111215 |
| Ezakiella peruensis | 109957T |