| Vagococcus silagei | 113536T |
| Valsa ceratosperma | 30252 |
| Vanderwaltozyma japonica | 11072, 11076, 11078T, 11080, 116645, 116646, 116647 |
| Vanderwaltozyma polyspora | 0996, 10782T |
| Vanderwaltozyma tropicalis | 105213, 105214T |
| Vanderwaltozyma verrucispora | 1884T, 1885, 103676 |
| Vanderwaltozyma yarrowii | 10314, 10607, 10608T |
| Vanrija fragicola | 100667T |
| Varicosporium elodeae | 106753 |
| Variovorax boronicumulans | 103145T, 110657, 110658 |
| Variovorax humicola | 111520T |
| Variovorax paradoxus | 15149T, 15150, 108632 |
| Variovorax rhizosphaerae | 112307T |
| Variovorax robiniae | 112308T |
| Variovorax soli | 106424T |
| Variovorax sp. | 108627 |
| Variovorax terrae | 115645T |
| Variovorax ureilyticus | 112306T |
| Vascellum curtisii | 106584 |
| Vasilyevaea enhydra | 102409T |
| Veluticeps angularis | 30304, 30305 |
| Venturia inaequalis | 6451, 9937, 9938 |
| Venturia nashicola | 8777 |
| Venturia pirina | 6189, 6455 |
| Venturiocistella japonica | 106633 |
| Veronaea botryosa | 9452, 109680, 109681, 109682, 109683, 109684, 109685 |
| Veronaea japonica | 105257 |
| Verruculina enalia | 32497, 32498 |
| Verticicladium trifidum | 8844, 9094, 100550, 102300 |
| Verticillium alboatrum | 31023 |
| Verticillium cephalosporum | 102326 |
| Verticillium dahliae | 5916, 5922, 6119, 6126, 6150, 9435, 9470, 9765, 9939, 31024, 112174, 112175, 112176, 112177, 112178, 112179 |
| Verticillium fungicola var. fungicola | 8578 |
| Verticillium lecanii | 8579, 32311, 32312, 32313, 32314, 32315, 100718, 101475, 101476 |
| Verticillium leptobactrum | 32274 |
| Verticillium niveostratosum | 5435, 6625 |
| Verticillium psalliotae | 30618, 30619, 32275, 100836 |
| Verticillium suchlasporium var. catenatum | 32276 |
| Verticillium tricorpus | 31025 |
| Vibrio aestuarianus | 15629T |
| Vibrio albensis | 101273, 101274, 101275, 101276 |
| Vibrio alginolyticus | 15630T, 15930 |
| Vibrio algivorus | 111146T |
| Vibrio algoinfesta | 14665, 14666 |
| Vibrio azureus | 104587T, 104588 |
| Vibrio campbellii | 15631T, 105237, 105238, 105239, 105240, 113564 |
| Vibrio chagasii | 110950 |
| Vibrio comitans | 102076T, 102077, 102078, 102079, 102080, 102081 |
| Vibrio cyclitrophicus | 107756T |
| Vibrio diazotrophicus | 103148T |
| Vibrio equitatus | 103149 |
| Vibrio ezurae | 102218T |
| Vibrio fluvialis | 103150T |
| Vibrio gazogenes | 103151T |
| Vibrio halioticoli | 102217T |
| Vibrio harveyi | 15632, 15634T, 101064, 113563 |
| Vibrio hyugaensis | 110633T |
| Vibrio ichthyoenteri | 15846, 15847T, 15848 |
| Vibrio inusitatus | 102082T, 102083 |
| Vibrio jasicida | 110949 |
| Vibrio mediterranei | 15635T |
| Vibrio metschnikovii | 103153T |
| Vibrio natriegens | 15636T |
| Vibrio nereis | 15637T |
| Vibrio orientalis | 15638T |
| Vibrio parahaemolyticus | 12711T, 115971 |
| Vibrio penaeicida | 15640T, 15641, 15642 |
| Vibrio proteolyticus | 13287T |
| Vibrio rarus | 102084T |
| Vibrio sagamiensis | 104589T, 104590 |
| Vibrio sp. | 101060, 101065, 101804, 101805, 101806, 101807, 101893, 108142, 114112, 114113 |
| Vibrio splendidus | 101061 |
| Vibrio superstes | 103154T |
| Vibrio tapetis | 101062 |
| Vibrio tubiashii | 15644T |
| Vibrio vulnificus | 15645T, 103022, 103023, 103024, 103025, 103026 |
| Vibrio zhanjiangensis | 108723T |
| Vibrissea sp. | 113636 |
| Virgaria nigra | 9238, 9453, 32656 |
| Virgibacillus halodenitrificans | 102361T |
| Virgibacillus indicus | 113014T |
| Virgibacillus pantothenticus | 102447T |
| Virgibacillus profundi | 113015T |
| Virgibacillus sp. | 102404, 114104, 116129, 116130 |
| Virgifigura deserti | 112951T |
| Virgisporangium aliadipatigenens | 105643, 105644T |
| Virgisporangium aurantiacum | 16421T |
| Virgisporangium myanmarense | 112733T |
| Virgisporangium ochraceum | 16418T, 16419, 16420, 105359 |
| Viridispora alata | 104916 |
| Vishniacozyma dimennae | 1863T |
| Vishniacozyma globispora | 10753T |
| Vishniacozyma penaeus | 0930T |
| Vishniacozyma sp. | 114176, 114177, 114748, 114749, 114750, 114751 |
| Vitellibacter todarodis | 113025T |
| Vogesella urethralis | 113779T |
| Volutella buxi | 6003 |
| Volutella ciliata | 9151, 100728 |
| Volutina concentrica | 9083, 9096, 9097 |
| Volvariella speciosa var. gloiocephala | 30350 |
| Volvariella volvacea | 30010, 31104 |
| Volvox sp. (class: Chlorophyceae) | 107897, 107912 |
| Vreelandella maris | 114670T |
| Vreelandella salicampi | 109914T |
| Vreelandella subglaciescola | 14766T |
| Vreelandella utahensis | 102410T |
| Vreelandella venusta | 102221T |
| Vuilleminia sp. | 110369 |
| Vulcanimicrobium alpinum | 115847T |
| Vulcanisaeta distributa | 100878T, 100880, 100881, 100882 |
| Vulcanisaeta souniana | 100879T |
| Vulgatibacter incomptus | 109945T |