| Dacrymyces capitatus | NBRC 104531, NBRC 104532, NBRC 104537, NBRC 104541 |
| Dacrymyces chrysospermus | NBRC 104533, NBRC 104534 |
| Dacrymyces lacrymalis | NBRC 104535, NBRC 104536 |
| Dacrymyces san-augustinii | NBRC 32515, NBRC 32516 |
| Dacrymyces stillatus | NBRC 104538 |
| Dacrymyces variisporus | NBRC 104539, NBRC 104540 |
| Dactylaria acerosa | NBRC 104481 |
| Dactylaria fusiformis | NBRC 105953 |
| Dactylaria purpurella | NBRC 9336 |
| Dactylaria sp. | NBRC 105261 |
| Dactylella atractoides | NBRC 7065 |
| Dactylidispora ellipsospora | NBRC 31376T |
| Dactylidispora singaporensis | NBRC 30865T |
| Dactylospora haliotrepha | NBRC 32479, NBRC 32480 |
| Dactylosporangium aurantiacum | NBRC 12592T |
| Dactylosporangium darangshiense | NBRC 109065T |
| Dactylosporangium fulvum | NBRC 14381T |
| Dactylosporangium luridum | NBRC 109093T |
| Dactylosporangium luteum | NBRC 109092T |
| Dactylosporangium maewongense | NBRC 106094T |
| Dactylosporangium matsuzakiense | NBRC 14259T |
| Dactylosporangium roseum | NBRC 14352T |
| Dactylosporangium salmoneum | NBRC 14103T |
| Dactylosporangium siamense | NBRC 106093T |
| Dactylosporangium sp. | NBRC 101297, NBRC 101672, NBRC 101673, NBRC 101674, NBRC 101730, NBRC 105341, NBRC 107861, NBRC 110003 |
| Dactylosporangium thailandense | NBRC 12593T |
| Dactylosporangium tropicum | NBRC 109071T |
| Dactylosporangium vinaceum | NBRC 14181T |
| Daedalea albida | NBRC 6434, NBRC 6510 |
| Daedalea dickinsii | NBRC 4979, NBRC 6487, NBRC 6488, NBRC 30766, NBRC 31163 |
| Daedalea malicola | NBRC 4978 |
| Daedalea serialis | NBRC 9286 |
| Daedaleopsis confragosa | NBRC 106854 |
| Daedaleopsis tricolor | NBRC 6269, NBRC 106855 |
| Daldinia concentrica | NBRC 7770, NBRC 32339, NBRC 32340 |
| Daldinia eschscholzii | NBRC 104666, NBRC 104670, NBRC 107024, NBRC 107025 |
| Danielia oregonensis | NBRC 1980T |
| Dasyscyphella longistipitata | NBRC 101335, NBRC 101336, NBRC 101351 |
| Dasyscyphella montana | NBRC 101338, NBRC 102336 |
| Dasyscyphella sp. | NBRC 104367 |
| Dasyscyphus ciliaris | NBRC 8993 |
| Dasyscyphus corticalis | NBRC 9518 |
| Debaryomyces carsonii | NBRC 0795, NBRC 0946T, NBRC 1989, NBRC 10572 |
| Debaryomyces castellii | NBRC 1359T |
| Debaryomyces coudertii | NBRC 1817T |
| Debaryomyces etchellsii | NBRC 1987T |
| Debaryomyces hansenii | NBRC 0026, NBRC 0093, NBRC 0855, NBRC 10142, NBRC 10939 |
| Debaryomyces hansenii var. fabryi | NBRC 0015T, NBRC 0037, NBRC 0058, NBRC 0059, NBRC 0082, NBRC 1752, NBRC 10571 |
| Debaryomyces hansenii var. hansenii | NBRC 0017, NBRC 0018, NBRC 0019, NBRC 0032, NBRC 0033, NBRC 0034, NBRC 0042, NBRC 0045, NBRC 0047, NBRC 0048, NBRC 0055, NBRC 0057, NBRC 0060, NBRC 0063, NBRC 0066, NBRC 0080, NBRC 0083T, NBRC 0094, NBRC 0097, NBRC 0564, NBRC 0582, NBRC 0623, NBRC 0644, NBRC 0728, NBRC 1751 |
| Debaryomyces maramus | NBRC 0668T, NBRC 1878, NBRC 1879, NBRC 10686, NBRC 10687, NBRC 10688 |
| Debaryomyces melissophilus | NBRC 1900T, NBRC 1901 |
| Debaryomyces nepalensis | NBRC 0039, NBRC 0085, NBRC 1428T, NBRC 1429, NBRC 102177 |
| Debaryomyces occidentalis var. occidentalis | NBRC 0371, NBRC 1839, NBRC 1840, NBRC 1841T, NBRC 10212 |
| Debaryomyces occidentalis var. persoonii | NBRC 1842T |
| Debaryomyces polymorphus | NBRC 111256 |
| Debaryomyces polymorphus var. polymorphus | NBRC 1166T, NBRC 1189, NBRC 1357, NBRC 1362, NBRC 1363, NBRC 1716, NBRC 1717 |
| Debaryomyces pseudopolymorphus | NBRC 1026T |
| Debaryomyces robertsiae | NBRC 1277T |
| Debaryomyces subglobosus | NBRC 0794T |
| Debaryomyces udenii | NBRC 10689T, NBRC 10690 |
| Debaryomyces vanrijiae var. vanrijiae | NBRC 0934T, NBRC 10028, NBRC 111332 |
| Debaryomyces vanrijiae var. yarrowii | NBRC 1818T |
| Debaryomyces vietnamensis | NBRC 115878 |
| Debaryomyces yamadae | NBRC 10691T, NBRC 10692 |
| Dechloromonas sp. | NBRC 113780 |
| Deferribacter desulfuricans | NBRC 101012T |
| Deferribacter sp. | NBRC 102158 |
| Deightoniella torulosa | NBRC 7658, NBRC 9333 |
| Deinococcus aluminii | NBRC 112889T |
| Deinococcus aquaticus | NBRC 101311T |
| Deinococcus aquiradiocola | NBRC 102118T |
| Deinococcus betulae | NBRC 115489T |
| Deinococcus caeni | NBRC 101312T |
| Deinococcus carri | NBRC 110142T |
| Deinococcus cellulosilyticus | NBRC 106333T |
| Deinococcus depolymerans | NBRC 102115T |
| Deinococcus grandis | NBRC 101905T |
| Deinococcus irradiatisoli | NBRC 113037T |
| Deinococcus koreensis | NBRC 112908T |
| Deinococcus lacus | NBRC 112440T |
| Deinococcus metallilatus | NBRC 110141T |
| Deinococcus misasensis | NBRC 102116T |
| Deinococcus multiflagellatus | NBRC 112888T |
| Deinococcus populi | NBRC 110763 |
| Deinococcus proteolyticus | NBRC 101906T |
| Deinococcus radiodurans | NBRC 15346T |
| Deinococcus radiophilus | NBRC 15347T |
| Deinococcus radiopugnans | NBRC 15348T |
| Deinococcus reticulitermitis | NBRC 106334T |
| Deinococcus roseus | NBRC 102117T |
| Deinococcus sp. | NBRC 113556, NBRC 114782, NBRC 114783 |
| Deinococcus wulumuqiensis | NBRC 105665T, NBRC 105666T |
| Deinococcus xinjiangensis | NBRC 107630T |
| Dekkera bruxellensis | NBRC 1590T |
| Delftia acidovorans | NBRC 13582, NBRC 14950T |
| Delftia tsuruhatensis | NBRC 16741T |
| Delitschia gigaspora | NBRC 9506, NBRC 30092 |
| Delitschia marchalii | NBRC 8602 |
| Dematioscypha dematiicola | NBRC 108583 |
| Dematium nigrum | NBRC 6131 |
| Demequina activiva | NBRC 110675T |
| Demequina aestuarii | NBRC 106260T |
| Demequina aurantiaca | NBRC 106265T |
| Demequina flava | NBRC 105854T |
| Demequina gelatinilytica | NBRC 109390T |
| Demequina globuliformis | NBRC 106266T |
| Demequina iriomotensis | NBRC 109399T |
| Demequina litorisediminis | NBRC 112299T |
| Demequina lutea | NBRC 106155T |
| Demequina mangrovi | NBRC 105856T |
| Demequina maris | NBRC 109392T, NBRC 109398, NBRC 110048 |
| Demequina oxidasica | NBRC 106264T |
| Demequina pelophila | NBRC 109393T |
| Demequina phytophila | NBRC 109391T |
| Demequina rhizosphaerae | NBRC 109397T, NBRC 110049, NBRC 110050 |
| Demequina salsinemoris | NBRC 105323T |
| Demequina sediminicola | NBRC 105855T |
| Demequina silvatica | NBRC 109395T |
| Demequina soli | NBRC 109394T |
| Demequina sp. | NBRC 104921, NBRC 104922, NBRC 107104, NBRC 110982, NBRC 110985, NBRC 110987, NBRC 110989, NBRC 110995, NBRC 110996, NBRC 110998 |
| Demequina subtropica | NBRC 109396T |
| Demetria terragena | NBRC 16164T |
| Dendrosporium lobatum | NBRC 108070 |
| Dendryphiella sp. | NBRC 100152, NBRC 100153, NBRC 100154 |
| Dendryphiella vinosa | NBRC 32669 |
| Dendryphion nanum | NBRC 8946 |
| Dendryphion papaveris | NBRC 9282, NBRC 9801 |
| Dendryphiopsis atra | NBRC 8839, NBRC 32634 |
| Denitrovibrio acetiphilus | NBRC 114555T |
| Dermabacter hominis | NBRC 106157T |
| Dermacoccus nishinomiyaensis | NBRC 15356T |
| Dermatophilus congolensis | NBRC 13913, NBRC 105199T, NBRC 112768 |
| Dermocarpa sp. (class: Cyanophyceae) | NBRC 102690, NBRC 102715, NBRC 102906, NBRC 102907 |
| Derxia gummosa | NBRC 102506T |
| Derxomyces boninensis | NBRC 100922T, NBRC 100923 |
| Derxomyces schimicola | NBRC 100924T |
| Derxomyces waltii | NBRC 100925T, NBRC 100926, NBRC 100927 |
| Desarmillaria tabescens | NBRC 9616, NBRC 31620 |
| Desertibaculum subflavum | NBRC 112952T |
| Desertimonas flava | NBRC 112924T |
| Desmazierella acicola | NBRC 9095 |
| Desmospora profundinema | NBRC 109626T |
| Desulfallas sapomandens | NBRC 112755T |
| Desulfallas thermosapovorans | NBRC 112758T |
| Desulfatitalea tepidiphila | NBRC 107166T |
| Desulfitobacterium hafniense | NBRC 109954 |
| Desulfobulbus rhabdoformis | NBRC 105811, NBRC 105812 |
| Desulfocucumis palustris | NBRC 112242T |
| Desulfofundulus thermoacetoxidans | NBRC 112756T |
| Desulfofundulus thermocisternus | NBRC 112757T |
| Desulfolucanica intricata | NBRC 109411T |
| Desulfolutivibrio sulfoxidireducens | NBRC 113989, NBRC 113990T |
| Desulfopila inferna | NBRC 103921T |
| Desulfoplanes formicivorans | NBRC 110391T |
| Desulfoprunum benzoelyticum | NBRC 110690T |
| Desulforamulus aeronauticus | NBRC 112752T |
| Desulfoscipio geothermicus | NBRC 112753T |
| Desulfoscipio gibsoniae | NBRC 112754T |
| Desulfotomaculum nigrificans | NBRC 13698T |
| Desulfovibrio brasiliensis | NBRC 105818 |
| Desulfovibrio capillatus | NBRC 105813, NBRC 105814 |
| Desulfovibrio dechloracetivorans | NBRC 105815, NBRC 105816, NBRC 105817 |
| Desulfovibrio indonesiensis | NBRC 105819 |
| Desulfovibrio sp. | NBRC 101757 |
| Desulfovibrio subterraneus | NBRC 112213T |
| Desulfovibrio vulgaris | NBRC 13699 |
| Desulfovibrio vulgaris subsp. vulgaris | NBRC 104121T |
| Desulfurococcales archaeon | NBRC 113280 |
| Dethiosulfatibacter aminovorans | NBRC 101112T |
| Devosia litorisediminis | NBRC 115152T |
| Devosia nitrariae | NBRC 112416T |
| Devosia oryziradicis | NBRC 114842T |
| Devosia rhizoryzae | NBRC 114485T |
| Devosia riboflavina | NBRC 13584T |
| Devosia soli | NBRC 106426T |
| Devosia yakushimensis | NBRC 103855T |
| Diaminobutyricibacter tongyongensis | NBRC 108724T |
| Diaminobutyricimonas aerilata | NBRC 108726T |
| Diaphorobacter aerolatus | NBRC 108926T |
| Diaphorobacter sp. | NBRC 105669 |
| Diaporthe citri | NBRC 6443, NBRC 8416, NBRC 8977, NBRC 9170, NBRC 30132, NBRC 30133, NBRC 30134, NBRC 30135 |
| Diaporthe eucalyptorum | NBRC 112129 |
| Diaporthe medusaea | NBRC 30895 |
| Diaporthe nomurai | NBRC 7661, NBRC 30961, NBRC 30962 |
| Diaporthe phaseolorum var. sojae | NBRC 6707, NBRC 6708, NBRC 6709, NBRC 6710 |
| Diaporthe sp. | NBRC 105283, NBRC 114865 |
| Diaporthe vaccinii | NBRC 32646T |
| Diatrype stigma | NBRC 32341, NBRC 32342 |
| Dicephalospora rufocornea | NBRC 103600, NBRC 103647, NBRC 103661, NBRC 103668, NBRC 103669, NBRC 109859 |
| Dicranidion fissile | NBRC 31823T |
| Dicranidion fragile | NBRC 6886, NBRC 6990 |
| Dicranidion inaequale | NBRC 9366T |
| Dicrateria rotunda (Class: Haptophyceae) | NBRC 102790, NBRC 102791 |
| Dictyobacter alpinus | NBRC 113154T |
| Dictyobacter arantiisoli | NBRC 113155T |
| Dictyobacter aurantiacus | NBRC 109595T |
| Dictyobacter kobayashii | NBRC 113153T |
| Dictyobacter vulcani | NBRC 113551T |
| Dictyochaeta gyrosetula | NBRC 104947 |
| Dictyochaeta simplex | NBRC 30665, NBRC 32659, NBRC 100560 |
| Dictyosporium digitatum | NBRC 104949 |
| Dictyosporium elegans | NBRC 8932, NBRC 32501, NBRC 32502, NBRC 101419 |
| Dictyuchus sterilis | NBRC 102548, NBRC 104178 |
| Dicyma olivacea | NBRC 9178T, NBRC 9841, NBRC 31999, NBRC 32298T, NBRC 33232 |
| Diddensiella caesifluorescens | NBRC 112342T, NBRC 112343 |
| Didymella bryoniae | NBRC 109318 |
| Didymella glomerata | NBRC 114570 |
| Didymella lycopersici | NBRC 6301 |
| Didymobotryum rigidum | NBRC 100408, NBRC 100409 |
| Didymostilbe matsushimae | NBRC 32328 |
| Diehliomyces microsporus | NBRC 30003 |
| Dietzia alimentaria | NBRC 109780T |
| Dietzia cinnamea | NBRC 102147T |
| Dietzia kunjamensis | NBRC 105042T |
| Dietzia maris | NBRC 13162, NBRC 15801T, NBRC 15802 |
| Dietzia natronolimnaea | NBRC 13170, NBRC 13173, NBRC 105040T |
| Dietzia papillomatosis | NBRC 105045T |
| Dietzia psychralcaliphila | NBRC 103065T |
| Dietzia sp. | NBRC 15324, NBRC 15325, NBRC 15349, NBRC 15350, NBRC 15351, NBRC 15352, NBRC 113575, NBRC 113576 |
| Dietzia timorensis | NBRC 104184T |
| Diffractella curvata | NBRC 9820 |
| Digitodochium rhodoleucum | NBRC 32296T |
| Diheterospora catenulata | NBRC 9373 |
| Dimargaris xerosporica | NBRC 105798 |
| Dimorphospora foliicola | NBRC 7529 |
| Dinemasporium ambiguum | NBRC 110114T |
| Dinemasporium bambusicola | NBRC 110115T |
| Dinemasporium iriomotense | NBRC 110116T |
| Dinemasporium japonicum | NBRC 110117T |
| Dinemasporium parastrigosum | NBRC 110118T |
| Dinemasporium pseudodecipiens | NBRC 110119T |
| Dinemasporium rishiriense | NBRC 110120T |
| Dinemasporium sasae | NBRC 110121T |
| Dioszegia crocea | NBRC 10113T |
| Dioszegia hungarica | NBRC 1052T, NBRC 10112 |
| Dioszegia zsoltii var. zsoltii | NBRC 114167, NBRC 114836 |
| Diplocarpon mali | NBRC 30405 |
| Diplocarpon rosae | NBRC 9908, NBRC 30158 |
| Diploceras hypericinum | NBRC 32647 |
| Diplocladiella scalaroides | NBRC 30074, NBRC 108210 |
| Diplocladiella taurina | NBRC 32864 |
| Diplococcium strictum | NBRC 6468 |
| Diplodia maydis | NBRC 6115 |
| Diplodia pinea | NBRC 6472 |
| Diplogelasinospora grovesii | NBRC 9549, NBRC 31886 |
| Diplogelasinospora inaequalis | NBRC 9824, NBRC 30580 |
| Diplogelasinospora princeps | NBRC 9550 |
| Diplomitoporus rimosus | NBRC 115254 |
| Diplosphaera chodatii (class: Trebouxiophyceae) | NBRC 113317 |
| Diplosphaera sp. (class: Trebouxiophyceae) | NBRC 113288, NBRC 113289, NBRC 113318 |
| Diplosporium flavum | NBRC 6788 |
| Dipodascopsis anomala | NBRC 10400T |
| Dipodascopsis tothii | NBRC 10813T |
| Dipodascopsis uninucleata var. uninucleata | NBRC 10814T |
| Dipodascopsis uninucleata var. wickerhamii | NBRC 10815T |
| Dipodascus aggregatus | NBRC 10816T |
| Dipodascus albidus | NBRC 1984 |
| Dipodascus ambrosiae | NBRC 10801T |
| Dipodascus armillariae | NBRC 10802T, NBRC 10803, NBRC 10804, NBRC 10817, NBRC 10818 |
| Dipodascus australiensis | NBRC 10805T |
| Dipodascus capitatus | NBRC 0743, NBRC 1197, NBRC 10819T, NBRC 10820 |
| Dipodascus geniculatus | NBRC 10806T |
| Dipodascus ingens | NBRC 10057, NBRC 10060 |
| Dipodascus macrosporus | NBRC 10807T |
| Dipodascus magnusii | NBRC 0110, NBRC 4600, NBRC 10808 |
| Dipodascus ovetensis | NBRC 1201, NBRC 10827 |
| Dipodascus spicifer | NBRC 10809T |
| Dipodascus tetrasperma | NBRC 10810T |
| Dipodascus tetrasporus | NBRC 103136T |
| Discosia aquatica | NBRC 32624 |
| Discosia artocreas | NBRC 8975, NBRC 31640, NBRC 31883 |
| Discosia brasiliensis | NBRC 104198, NBRC 104199 |
| Discosia eucalypti | NBRC 104195, NBRC 104196, NBRC 104197 |
| Discosia pini | NBRC 32623 |
| Discosia yakushimensis | NBRC 104194T |
| Discostroma corticola | NBRC 32625 |
| Discostroma tostum | NBRC 32626 |
| Discostroma tricellulare | NBRC 32705T, NBRC 32706, NBRC 32707, NBRC 100406, NBRC 100407 |
| Discostromopsis stoneae | NBRC 32690 |
| Disporotrichum dimorphosporum | NBRC 9363 |
| Dissulfurispira thermophila | NBRC 114245T |
| Diutina rugosa | NBRC 0750T |
| Diutina siamensis | NBRC 109695T |
| Dixoniella grisea (class: Rhodellophyceae) | NBRC 102778 |
| Doassansia horiana | NBRC 9629, NBRC 9630 |
| Dolosigranulum pigrum | NBRC 15550T |
| Doratomyces microsporus | NBRC 8107, NBRC 9188, NBRC 9383, NBRC 31956, NBRC 32251 |
| Doratomyces purpureofuscus | NBRC 7677, NBRC 31240, NBRC 33045 |
| Doratomyces putredinis | NBRC 8987, NBRC 9384, NBRC 33046 |
| Doratomyces stemonitis | NBRC 5878, NBRC 6789, NBRC 7857, NBRC 8314, NBRC 32040 |
| Dothideomycetes sp. | NBRC 112134 |
| Dothiorella ribis | NBRC 6461 |
| Drechmeria balanoides | NBRC 102297 |
| Drechmeria cf. zeospora | NBRC 109422 |
| Drechslera avenae | NBRC 6636, NBRC 7254, NBRC 7358, NBRC 100219 |
| Drechslera biseptata | NBRC 30131 |
| Drechslera buchloes | NBRC 9794 |
| Drechslera catenaria | NBRC 100218 |
| Drechslera dematioidea | NBRC 7364 |
| Drechslera erythrospila | NBRC 7260, NBRC 7378 |
| Drechslera monoceras | NBRC 9619, NBRC 9800 |
| Drechslera papendorfii | NBRC 100211, NBRC 100212 |
| Drechslera phlei | NBRC 7359 |
| Drechslera poae | NBRC 9796, NBRC 9798 |
| Drechslera siccans | NBRC 6688, NBRC 7363, NBRC 7372, NBRC 7373, NBRC 7374 |
| Drechslera tritici-vulgaris | NBRC 6640, NBRC 7506 |
| Drechslera zizaniae | NBRC 6632, NBRC 9799 |
| Drepanospora pannosa | NBRC 32661 |
| Duganella aceris | NBRC 113903T |
| Duganella dendranthematis | NBRC 114510T |
| Duganella zoogloeoides | NBRC 102465T |
| Dumontinia tuberosa | NBRC 30254 |
| Duosporium yamadanum | NBRC 32568, NBRC 32569 |
| Durella macrospora | NBRC 114593 |
| Dyadobacter alkalitolerans | NBRC 107668T |
| Dyadobacter flavalbus | NBRC 113854T |
| Dyadobacter frigoris | NBRC 113791T, NBRC 113792 |
| Dyadobacter koreensis | NBRC 101116T |
| Dyadobacter psychrotolerans | NBRC 113790T |
| Dyadobacter sp. | NBRC 114372 |
| Dyella acidisoli | NBRC 111980T |
| Dyella dinghuensis | NBRC 111978T |
| Dyella flagellata | NBRC 111981T |
| Dyella flava | NBRC 111979T |
| Dyella halodurans | NBRC 111474T |
| Dyella humi | NBRC 114105T |
| Dyella japonica | NBRC 102414T, NBRC 104185, NBRC 104186 |
| Dyella koreensis | NBRC 100831T |
| Dyella lipolytica | NBRC 111473T |
| Dyella mobilis | NBRC 111475T |
| Dyella nitratireducens | NBRC 111472T |
| Dyella sp. | NBRC 101872, NBRC 116603 |
