| Fabibacter misakiensis | 110216T |
| Faecalibacterium sp. | 113913 |
| Faecalibacterium taiwanense | 116372T, 116373 |
| Falsibacillus albus | 113502T |
| Farysia acheniorum | 10052T |
| Fastidiosibacter lacustris | 112274T |
| Faurelina indica | 100028 |
| Favolus arcularius | 4959 |
| Fellomyces horovitziae | 10766T |
| Fellomyces penicillatus | 10119T, 10678 |
| Fellomyces polyborus | 10120T, 10203 |
| Femsjonia peziziformis | 32517, 32518, 32519, 104542 |
| Fennellia flavipes | 4029, 4052, 4354, 4355, 100549 |
| Fennellia nivea | 4112T, 9653T, 32020T |
| Fennellomyces linderi | 6409T |
| Ferrigenium kumadai | 112974T |
| Ferrimonas aestuarii | 113700T |
| Ferrimonas balearica | 104245, 104250 |
| Ferrimonas futtsuensis | 101558T |
| Ferrimonas kyonanensis | 101286T |
| Ferrimonas marina | 102583T, 104246, 104247, 104248 |
| Ferrimonas sediminicola | 113699T |
| Ferrimonas sp. | 104249, 104251, 104252 |
| Ferrovibrio soli | 112682T |
| Ferruginibacter albus | 113101T |
| Fervidobacterium nodosum | 109653T |
| Fibrella aquatilis | 115092T |
| Fibrella forsythiae | 115094T |
| Fibrella rubiginis | 115093T |
| Fibrella sp. | 114259, 115440 |
| Fibroporia gossypium | 32319, 32320 |
| Fibulobasidium inconspicuum | 31001, 31002, 31003, 31004 |
| filamentous-cyanophyte (Class: Cyanophyceae) | 115797 |
| filamentous-ulvophyte (Class: Ulvophyceae) | 102698, 102699, 102720 |
| Filimonas lacunae | 104114T |
| Filobasidium elegans | 10881, 10882 |
| Filobasidium floriforme | 1603, 1915, 1916, 10883, 10884, 10885, 10886 |
| Filobasidium globisporum | 10887, 10888 |
| Filobasidium magnum | 0698T, 114168, 115879 |
| Filobasidium mali | 114169 |
| Filobasidium uniguttulatum | 0699T |
| Filoboletus manipularis | 6897 |
| Finegoldia magna | 113804 |
| Fistulina hepatica | 8764, 30300 |
| Flabellospora tetracladia | 100619 |
| Flagelloscypha japonica | 101830T |
| Flagelloscypha sp. | 104516 |
| Flammeovirga aprica | 15941T |
| Flammeovirga arenaria | 15982T |
| Flammeovirga sp. | 100889, 100890, 100891, 100892, 100893, 100894, 100895, 100896, 100897 |
| Flammeovirga yaeyamensis | 100898T, 100899, 100900, 100901, 100902 |
| Flammulina populicola | 7777 |
| Flammulina velutipes | 4901, 5366, 7046, 7663, 8329, 30224, 30488, 30489, 30490, 30491, 30492, 30493, 30494, 30497, 30598, 30599, 30600, 30601, 30602, 30603, 30875, 30904, 30905, 31862, 33210, 114698 |
| Flavicella marina | 110145T |
| Flaviflagellibacter deserti | 112958T |
| Flavihumibacter petaseus | 106054T |
| Flavihumibacter sp. | 116280 |
| Flavipsychrobacter stenotrophus | 113112T |
| Flaviramulus aestuariivivens | 112707T |
| Flavisolibacter aluminii | 112870T |
| Flavisolibacter longurius | 114375T |
| Flavisolibacter metallilatus | 111784T |
| Flavitalea sp. | 116071 |
| Flavobacteriaceae bacterium | 116720, 116721 |
| Flavobacterium aestivum | 114941T |
| Flavobacterium album | 112744T |
| Flavobacterium algicola | 102673T |
| Flavobacterium algoritolerans | 114813T |
| Flavobacterium aquatile | 15052T |
| Flavobacterium aquiphilum | 114945T |
| Flavobacterium arsenitoxidans | 109607T |
| Flavobacterium bomense | 113662T, 113663 |
| Flavobacterium branchiophilum | 15030T |
| Flavobacterium caeni | 104239T |
| Flavobacterium caseinilyticum | 113785T |
| Flavobacterium cauense | 104929T |
| Flavobacterium cellulosilyticum | 113787T |
| Flavobacterium cheniae | 103934T |
| Flavobacterium cheongpyeongense | 113424T |
| Flavobacterium chuncheonense | 112526T |
| Flavobacterium columnare | 100251T |
| Flavobacterium crocinum | 112743T |
| Flavobacterium cucumis | 106403T |
| Flavobacterium daejeonense | 106390T |
| Flavobacterium degerlachei | 102677T |
| Flavobacterium eburneipallidum | 114949T |
| Flavobacterium flaviflagrans | 112704T |
| Flavobacterium flavigenum | 114942T |
| Flavobacterium flevense | 14960T |
| Flavobacterium fluviale | 113117T |
| Flavobacterium frigidarium | 102676T |
| Flavobacterium frigoris | 102678T |
| Flavobacterium frigoritolerans | 113654T |
| Flavobacterium fulvum | 111764T |
| Flavobacterium gelatinilyticum | 114944T |
| Flavobacterium glaciei | 102029T |
| Flavobacterium glycines | 105008T |
| Flavobacterium granuli | 102009T |
| Flavobacterium hiemivividum | 113788T |
| Flavobacterium humicola | 111657T |
| Flavobacterium hydatis | 14958T |
| Flavobacterium hydrophilum | 113423T |
| Flavobacterium johnsoniae | 14942T, 15970 |
| Flavobacterium lacicola | 112883T |
| Flavobacterium lacus | 109715T, 109716 |
| Flavobacterium lacustre | 114948T |
| Flavobacterium laiguense | 113059T |
| Flavobacterium limicola | 103156T |
| Flavobacterium limnophilum | 114947T |
| Flavobacterium luteolum | 114943T |
| Flavobacterium lutescens | 3084, 3085, 12997 |
| Flavobacterium luteum | 112527T |
| Flavobacterium magnum | 112740T |
| Flavobacterium marginilacus | 114940T |
| Flavobacterium noncentrifugens | 108844T |
| Flavobacterium notoginsengisoli | 110012T |
| Flavobacterium okayamense | 115344T |
| Flavobacterium orientale | 109717T, 109718 |
| Flavobacterium pallidum | 112741T |
| Flavobacterium palustre | 110389T |
| Flavobacterium pectinovorum | 15945T |
| Flavobacterium pedocola | 111765T |
| Flavobacterium praedii | 114937T, 114938 |
| Flavobacterium psychrolimnae | 102679T |
| Flavobacterium psychrophilum | 100250T, 108951, 108952, 109952, 111643 |
| Flavobacterium psychrotolerans | 113060T |
| Flavobacterium quisquiliarum | 111769T |
| Flavobacterium ranwuense | 113777T |
| Flavobacterium saccharophilum | 15944T |
| Flavobacterium sandaracinum | 113784T |
| Flavobacterium sediminilitoris | 113020T |
| Flavobacterium shii | 113652T |
| Flavobacterium silvisoli | 113789T |
| Flavobacterium sp. | 101303, 101304, 101331, 101332, 101333, 101334, 101627, 105624, 107121, 107737, 107740, 113649, 113650, 113651, 113653, 113664, 113746, 114841, 115963, 115964, 116462, 116483, 116549 |
| Flavobacterium succinicans | 14905T |
| Flavobacterium suncheonense | 106391T |
| Flavobacterium terrae | 106402T |
| Flavobacterium terrisoli | 116012T |
| Flavobacterium ureilyticum | 112683T |
| Flavobacterium urumqiense | 106480T |
| Flavobacterium xanthum | 14972T |
| Flavobacterium xueshanense | 106479T |
| Flavobacterium yafengii | 114814T |
| Flavonifractor plautii | 113805 |
| Flexibacter aggregans | 15974, 15975 |
| Flexibacter aurantiacus subsp. copepodarum | 15978T |
| Flexibacter aurantiacus subsp. excathedrus | 16024T |
| Flexibacter flexilis | 15060T, 16025, 16026, 16027 |
| Flexibacter flexilis subsp. pelliculosus | 16028T |
| Flexibacter sp. | 107128 |
| Flexithrix dorotheae | 15973, 15976, 15987T, 15990 |
| Flexivirga aerilata | 114622T |
| Flexivirga alba | 107580T |
| Flexivirga sp. | 114183, 115791T |
| Flosculomyces floridaensis | 30653, 30654, 30655, 30656 |
| Fluviicola kyonggii | 112684T |
| Fluviicola taffensis | 106335T |
| Fluviispira sp. | 114929 |
| Fodinicola acaciae | 114213T |
| Fomes fomentarius | 8246, 30371, 104975, 106857, 109387 |
| Fomitopsis annosa | 6769 |
| Fomitopsis insularis | 6887 |
| Fomitopsis palustris | 30339 |
| Fomitopsis pinicola | 8705, 106830, 110169, 110170, 110171 |
| Fonsecaea pedrosoi | 6071, 6726, 6728, 6729, 6730, 6731, 6732, 6733 |
| Fonsecazyma sp. | 114210T, 114211, 114212T |
| Fonsecazyma yulaniae | 114206T |
| Formicincola oecophyllae | 113639, 113640T |
| Formosa arctica | 106080T |
| Formosa haliotis | 111189T, 111190, 111191, 111192 |
| Formosa sp. | 101327 |
| Francisella salimarina | 113781T |
| Frateuria aurantia | 3245T, 3247, 3249, 13328, 13329, 13330, 13331, 13332, 13333 |
| Frateuria sp. | 115789T |
| Frateuria terrea | 104236T |
| Friedmanniella luteola | 104963T |
| Frigidibacter albus | 109671T, 109672, 109673 |
| Frigoribacterium faeni | 103066T |
| Frondibacter aureus | 110021T |
| Frondibacter mangrovi | 112695T |
| Frondihabitans sp. | 113526 |
| Frondihabitans sucicola | 108728T |
| Fructilactobacillus carniphilus | 114985T |
| Fructilactobacillus cliffordii | 114986, 114988T |
| Fructilactobacillus florum | 111533T |
| Fructilactobacillus fructivorans | 13118, 13954T, 14747, 15887 |
| Fructilactobacillus hinvesii | 114987T |
| Fructilactobacillus ixorae | 111239T |
| Fructilactobacillus myrtifloralis | 114989T |
| Fructilactobacillus sanfranciscensis | 111534T |
| Fructobacillus americanaquae | 114983T |
| Fructobacillus apis | 115637T |
| Fructobacillus broussonetiae | 114436T |
| Fructobacillus durionis | 113239T |
| Fructobacillus ficulneus | 113240T |
| Fructobacillus fructosus | 3516T |
| Fructobacillus papyriferae | 114433T, 114434 |
| Fructobacillus papyrifericola | 114435T |
| Fructobacillus parabroussonetiae | 114437T |
| Fructobacillus pseudoficulneus | 113241T |
| Fulvia fulva | 6373, 8419, 9759, 31254 |
| Fulvibacter tottoriensis | 102624T |
| Fulvivirga kasyanovii | 106557T |
| Furfurilactobacillus siliginis | 101315T, 101316 |
| Fusariella concinna | 31665 |
| Fusarium anguioides | 4467 |
| Fusarium asiaticum | 113174, 113175, 113176, 113177, 113178, 113179, 113180, 113181, 113182, 113184, 113185, 113358, 114121, 114122, 114123, 114124, 114125 |
| Fusarium avenaceum | 33236 |
| Fusarium avenaceum f. fabae | 7158, 7159 |
| Fusarium cf. incarnatum | 111746 |
| Fusarium chlamydosporum var. chlamydosporum | 31096, 32672 |
| Fusarium crookwellense | 32584, 32585, 32586 |
| Fusarium culmorum | 5902, 6814 |
| Fusarium equiseti | 8104, 30198 |
| Fusarium fujikuroi | 111724, 111725, 111732, 111736, 111737, 111738, 111739, 111740, 111741, 111742, 111749, 111750, 111751, 111752, 111753, 111754 |
| Fusarium graminearum | 113183, 114126 |
| Fusarium kyushuense | 113359 |
| Fusarium merismoides | 9984 |
| Fusarium merismoides var. acetilereum | 30040T, 30041 |
| Fusarium oxysporum | 5942, 7152, 7155, 7156, 7157, 7190, 30700, 30701, 30702, 30703, 30704, 30705, 30706, 30707, 30708, 30709, 30710, 31631, 108963, 108964, 111728, 111729, 111730, 111731, 111733, 111734, 111735, 111743, 111744, 111745, 111747, 111748, 111755, 114569 |
| Fusarium oxysporum fsp. adzukicola | 31629, 31630 |
| Fusarium oxysporum fsp. apii | 9964 |
| Fusarium oxysporum fsp. asparagi | 31382 |
| Fusarium oxysporum fsp. batatas | 4468 |
| Fusarium oxysporum fsp. conglutinans | 6383, 9469 |
| Fusarium oxysporum fsp. cucumerinum | 6384, 9761, 9965, 9966, 31224 |
| Fusarium oxysporum fsp. fragariae | 31180, 31982, 31983, 31984, 31985, 31986 |
| Fusarium oxysporum fsp. gladioli | 5894, 7166 |
| Fusarium oxysporum fsp. lini | 5880, 5885 |
| Fusarium oxysporum fsp. lycopersici | 5901, 6531, 9967, 31213 |
| Fusarium oxysporum fsp. melongenae | 7706, 9968 |
| Fusarium oxysporum fsp. melonis | 6385 |
| Fusarium oxysporum fsp. narcissi | 5265 |
| Fusarium oxysporum fsp. nicotianae | 6386 |
| Fusarium oxysporum fsp. niveum | 4471, 9969 |
| Fusarium oxysporum fsp. phaseoli | 9970 |
| Fusarium oxysporum fsp. pini | 9971 |
| Fusarium oxysporum fsp. raphani | 9972, 32000 |
| Fusarium oxysporum fsp. spinaciae | 30467, 30468, 30469 |
| Fusarium oxysporum fsp. tulipae | 32203, 32204, 32205, 32206, 32207, 32208 |
| Fusarium oxysporum fsp. vasinfectum | 4472, 5903 |
| Fusarium pallidoroseum | 30199, 30200, 30926, 31097 |
| Fusarium poae | 108965 |
| Fusarium proliferatum | 107681, 109045, 111726, 111727 |
| Fusarium pseudocircinatum | 32025T |
| Fusarium roseum | 7189, 8501, 8502, 8503, 30966 |
| Fusarium roseum f. cereale | 9978, 32209 |
| Fusarium solani | 5232, 5890, 5891, 5892, 5899, 5977, 7153, 7154, 7163, 7164, 8505, 8506, 8508, 8509, 8510, 9955, 31093, 104627, 108966, 108967, 108968, 108969, 108970, 108971, 108972, 108973, 108974, 108975, 108976, 108977, 108978, 109025, 109026, 109027, 109028, 109029, 109030, 109031, 109032, 109033, 109034 |
| Fusarium solani f. mori | 7707, 7708, 30964 |
| Fusarium solani f. phaseoli | 5978, 9974 |
| Fusarium solani f. xanthoxyli | 7709, 7710 |
| Fusarium solani fsp. cucurbitae | 108979 |
| Fusarium solani fsp. pisi | 9425, 9975, 108980 |
| Fusarium solani var. coeruleum | 31094 |
| Fusarium solani var. martii | 5900 |
| Fusarium solani-melongenae | 6891 |
| Fusarium sp. | 100844, 104635, 107621, 107622, 110919, 110937, 111229, 114567, 114568, 115531 |
| Fusarium sporotrichioides | 33237 |
| Fusarium tricinctum | 33238 |
| Fuscoporia obliqua | 8681 |
| Fusicladium carpophilum | 32179 |
| Fusicladium levieri | 5267, 6447 |
| Fusicladium orbiculatum | 6458 |
| Fusicoccum bacillare | 6467 |
| Fusicoccum sp. | 102247 |
| Fusidium sp. | 6652, 8832, 101218 |