微生物 : Rhodococcus opacus

微生物株情報

NBRC番号	108011
学名	Rhodococcus opacus
別名（シノニム）	該当データなし
由来	Osaka Univ. (K. Honda) <- Hiroshima Univ. (J. Kato, B-4)
他保存機関番号
他株番号	B-4
参考文献	16233805 Isolation and characterization of benzene-tolerant Rhodococcus opacus strains. (J Biosci Bioeng. 2005) 17123076 Utilization of hydrophobic bacterium Rhodococcus opacus B-4 as whole-cell catalyst in anhydrous organic solvents. (Appl Microbiol Biotechnol. 2007)

推定保有機能 >>詳細


タイプ	パターン	構成遺伝子		該当CDS
Alanine racemization(NFUNC_0063)
必須	A	ALR (NRULE_0228)	Alanine racemase	ROP_62400
n-alkane hydroxylation(NFUNC_0008)
必須	B	ALKB (NRULE_0024)	Alkane 1-monooxygenase	ROP_22570 ROP_pROB01-04350
任意		RUBA (NRULE_0039)	Rubredoxin	ROP_pROB01-04360 ROP_22590 ROP_22580 ROP_pROB02-02010 ROP_pROB01-04370
		RUBB (NRULE_0040)	Rubredoxin reductase	ROP_pROB01-04380 ROP_22600
		FDX1 (NRULE_0034)	Putative Rieske-type ferredoxin	ROP_18030 ROP_17790 ROP_14890 ROP_14870 ROP_08600 ROP_06010 ROP_31670 ROP_44530 ROP_46320 ROP_46340 ROP_53630 ROP_58730 ROP_70810 ROP_71710 ROP_pROB02-01600 ROP_pROB02-01580 ROP_28570 ROP_pROB02-02050 ROP_38640 ROP_39230 ROP_40940 ROP_42780 ROP_42810 ROP_43970 ROP_25670 ROP_24850 ROP_22170 ROP_20980
Ampicillin resistance(NFUNC_0046)
必須	A	BLAA (NRULE_0122)	Beta-lactamase class A	ROP_02970
Anthranilate biosynthesis(NFUNC_0038)
必須	A	GLAT (NRULE_0142)	Glutamine amidotransferase	ROP_35100 ROP_61630
必須	A	TRPE (NRULE_0143)	Anthranilate synthase component I	ROP_07420
Aromatic hydrocarbon degradation (via hydroxylation by dioxygenase)(NFUNC_0016)
必須	A	RHDA (NRULE_0048)	Ring-hydroxylating dioxygenase alpha subunit	ROP_17790 ROP_18030 ROP_20980 ROP_24850 ROP_25670 ROP_28570 ROP_31670 ROP_46340 ROP_71710 ROP_pROB02-01580 ROP_pROB02-02050 ROP_14870
		RHDB (NRULE_0049)	Ring-hydroxylating dioxygenase beta subunit	ROP_pROB02-01590 ROP_71720 ROP_46330 ROP_25680 ROP_20990 ROP_pROB02-02060
		CDDH (NRULE_0056)	Cis-dihydrodiol dehydrogenase	ROP_pROB02-01630
任意		FDR1 (NRULE_0032)	Oxygenase electron transfer component	ROP_20970 ROP_pROB02-00900 ROP_63950 ROP_61150 ROP_58950 ROP_53850 ROP_52840 ROP_40920 ROP_38620 ROP_37440 ROP_34890 ROP_30070 ROP_28620 ROP_26720 ROP_25780 ROP_25700 ROP_25470 ROP_24410 ROP_21000 ROP_17720 ROP_11200
		FDX1 (NRULE_0034)	Putative Rieske-type ferredoxin	ROP_42780 ROP_pROB02-02050 ROP_pROB02-01600 ROP_pROB02-01580 ROP_71710 ROP_70810 ROP_58730 ROP_53630 ROP_46340 ROP_46320 ROP_44530 ROP_43970 ROP_42810 ROP_06010 ROP_08600 ROP_14870 ROP_14890 ROP_17790 ROP_18030 ROP_20980 ROP_22170 ROP_24850 ROP_25670 ROP_28570 ROP_31670 ROP_38640 ROP_39230 ROP_40940
		FDR2 (NRULE_0057)	Ferredoxin reductase	ROP_pROB02-01610 ROP_pROB01-04380 ROP_pROB02-01180 ROP_70800 ROP_33130 ROP_42790 ROP_45680 ROP_53800 ROP_54110
Arsenical resistance(NFUNC_0004)
必須	D	ARSB2 (NRULE_0016)	Arsenite resistance protein ArsB	ROP_00160 ROP_29960
必須	D	ARSC1 (NRULE_0017)	Arsenate reductase	ROP_57170
任意		ARSA (NRULE_0014)	Arsenical pump-driving ATPase	ROP_08460 ROP_00210
任意		ARSD (NRULE_0020)	Arsenical resistance operon trans-acting repressor ArsD	ROP_00200
Bacitracin resistance(NFUNC_0022)
必須	A	UPPP (NRULE_0097)	Undecaprenyl-diphosphatase	ROP_06170
Benzoate degradation (via hydroxylation by dioxygenase)(NFUNC_0017)
必須	A	BENA (NRULE_0046)	Benzoate 1,2-dioxygenase alpha subunit	ROP_20980
		BENB (NRULE_0047)	Benzoate 1,2-dioxygenase beta subunit	ROP_20990
		BEND (NRULE_0082)	1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase	ROP_21010
任意		BENC (NRULE_0055)	Benzoate 1,2-dioxygenase electron transfer component	ROP_21000
		FDR1 (NRULE_0032)	Oxygenase electron transfer component	ROP_63950 ROP_24410 ROP_21000 ROP_20970 ROP_17720 ROP_11200 ROP_25470 ROP_25700 ROP_25780 ROP_26720 ROP_28620 ROP_30070 ROP_34890 ROP_37440 ROP_38620 ROP_40920 ROP_52840 ROP_53850 ROP_58950 ROP_61150 ROP_pROB02-00900
		FDX1 (NRULE_0034)	Putative Rieske-type ferredoxin	ROP_40940 ROP_06010 ROP_08600 ROP_14870 ROP_14890 ROP_17790 ROP_18030 ROP_20980 ROP_22170 ROP_24850 ROP_25670 ROP_28570 ROP_31670 ROP_38640 ROP_39230 ROP_42780 ROP_42810 ROP_43970 ROP_44530 ROP_46320 ROP_46340 ROP_53630 ROP_58730 ROP_70810 ROP_71710 ROP_pROB02-01580 ROP_pROB02-01600 ROP_pROB02-02050
		FDR2 (NRULE_0057)	Ferredoxin reductase	ROP_53800 ROP_54110 ROP_45680 ROP_33130 ROP_70800 ROP_pROB01-04380 ROP_pROB02-01180 ROP_pROB02-01610 ROP_42790
Beta-lactam antibiotic resistance(NFUNC_0033)
必須	A	BLAA (NRULE_0122)	Beta-lactamase class A	ROP_02970
Betaine biosynthesis (from choline)(NFUNC_0049)
必須	C	CHOX (NRULE_0178)	Choline oxidase	ROP_14830 ROP_15550
Bioplastic degradation(NFUNC_0015)
必須	C	PHAZ3 (NRULE_0088)	Poly(3-hydroxyalkanoate) depolymerase	ROP_36310
Catechol degradation (beta-ketoadipate pathway)(NFUNC_0013)
必須	A	CATA (NRULE_0052)	Catechol 1,2-dioxygenase	ROP_20870 ROP_22420
		CATB2 (NRULE_0053)	(Chloro)muconate cycloisomerase	ROP_20860
		CATC (NRULE_0054)	Muconolactone isomerase	ROP_20850
		PCAD (NRULE_0070)	3-oxoadipate enol-lactonase	ROP_10540
		PCAI (NRULE_0072)	3-oxoadipate CoA-transferase subunit A	ROP_10500 ROP_37640
		PCAJ (NRULE_0073)	3-oxoadipate CoA-transferase subunit B	ROP_10490
		PCAF (NRULE_0074)	Beta-ketoadipyl-CoA thiolase	ROP_27210 ROP_25860 ROP_22440 ROP_10560
	B	CATA (NRULE_0052)	Catechol 1,2-dioxygenase	ROP_22420 ROP_20870
		CATC (NRULE_0054)	Muconolactone isomerase	ROP_20850
		PCAD (NRULE_0070)	3-oxoadipate enol-lactonase	ROP_10540
		PCAI (NRULE_0072)	3-oxoadipate CoA-transferase subunit A	ROP_10500 ROP_37640
		PCAJ (NRULE_0073)	3-oxoadipate CoA-transferase subunit B	ROP_10490
		PCAF (NRULE_0074)	Beta-ketoadipyl-CoA thiolase	ROP_10560 ROP_27210 ROP_22440 ROP_25860
		CATB1 (NRULE_0386)	Muconate cycloisomerase	ROP_20860
	C	CATA (NRULE_0052)	Catechol 1,2-dioxygenase	ROP_20870 ROP_22420
		CATC (NRULE_0054)	Muconolactone isomerase	ROP_20850
		PCAL (NRULE_0071)	3-oxoadipate enol-lactone hydrolase/4-carboxymuconolactone decarboxylase	ROP_10540
		PCAI (NRULE_0072)	3-oxoadipate CoA-transferase subunit A	ROP_10500 ROP_37640
		PCAJ (NRULE_0073)	3-oxoadipate CoA-transferase subunit B	ROP_10490
		PCAF (NRULE_0074)	Beta-ketoadipyl-CoA thiolase	ROP_27210 ROP_10560 ROP_22440 ROP_25860
		CATB1 (NRULE_0386)	Muconate cycloisomerase	ROP_20860
	D	CATA (NRULE_0052)	Catechol 1,2-dioxygenase	ROP_22420 ROP_20870
		CATB2 (NRULE_0053)	(Chloro)muconate cycloisomerase	ROP_20860
		CATC (NRULE_0054)	Muconolactone isomerase	ROP_20850
		PCAL (NRULE_0071)	3-oxoadipate enol-lactone hydrolase/4-carboxymuconolactone decarboxylase	ROP_10540
		PCAI (NRULE_0072)	3-oxoadipate CoA-transferase subunit A	ROP_10500 ROP_37640
		PCAJ (NRULE_0073)	3-oxoadipate CoA-transferase subunit B	ROP_10490
		PCAF (NRULE_0074)	Beta-ketoadipyl-CoA thiolase	ROP_22440 ROP_25860 ROP_27210 ROP_10560
Ectoine biosynthesis(NFUNC_0056)
必須	A	ECTB (NRULE_0186)	Diaminobutyrate--2-oxoglutarate transaminase	ROP_10280
		ECTA (NRULE_0187)	L-2,4-diaminobutyric acid acetyltransferase	ROP_10270
		ECTC (NRULE_0188)	L-ectoine synthase	ROP_10290
GABA biosynthesis(NFUNC_0066)
必須	A	GAD (NRULE_0231)	Glutamate decarboxylase	ROP_60750
Hydroxyectoine biosynthesis(NFUNC_0057)
必須	A	ECTD (NRULE_0189)	Ectoine hydroxylase	ROP_50010 ROP_44930
任意		ECTB (NRULE_0186)	Diaminobutyrate--2-oxoglutarate transaminase	ROP_10280
		ECTA (NRULE_0187)	L-2,4-diaminobutyric acid acetyltransferase	ROP_10270
		ECTC (NRULE_0188)	L-ectoine synthase	ROP_10290
Macrolide antibiotic resistance(NFUNC_0045)
必須	B	RLMA (NRULE_0165)	23S rRNA (guanine-N(1))-methyltransferase	ROP_60330
必須	F	MGT (NRULE_0170)	Macrolide glycosyltransferase	ROP_49160
Metal-binding protein(NFUNC_0105)
必須	A	MOP (NRULE_0322)	Putative molybdenum-binding protein	ROP_37310 ROP_09900 ROP_34560 ROP_34590
	C	MODA (NRULE_0324)	Molybdate ABC transporter substrate-binding protein	ROP_32460 ROP_09930 ROP_11350 ROP_pROB01-02730 ROP_23340 ROP_34580 ROP_03090
	F	SOXR (NRULE_0329)	Redox-sensitive transcriptional activator SoxR	ROP_03030 ROP_57140
Molybdate transport (ABC transporter)(NFUNC_0097)
必須	A	MODA (NRULE_0324)	Molybdate ABC transporter substrate-binding protein	ROP_32460 ROP_34580 ROP_23340 ROP_11350 ROP_09930 ROP_03090 ROP_pROB01-02730
任意		MODB (NRULE_0325)	Molybdate ABC transporter permease protein	ROP_34570
(R)-pantothenate biosynthesis(NFUNC_0030)
必須	A	PAND (NRULE_0115)	Aspartate 1-decarboxylase	ROP_43320
		PANB (NRULE_0116)	3-methyl-2-oxobutanoate hydroxymethyltransferase	ROP_08950
		PANE (NRULE_0117)	2-dehydropantoate 2-reductase	ROP_13640
		PANC (NRULE_0118)	Pantothenate synthetase	ROP_43310
Penicillin resistance(NFUNC_0047)
必須	A	BLAA (NRULE_0122)	Beta-lactamase class A	ROP_02970
Phenol degradation(NFUNC_0028)
必須	B	PHEA1 (NRULE_0083)	Aromatic ring hydroxylase	ROP_14550 ROP_20940 ROP_22410 ROP_37410 ROP_pROB02-01900
任意		FDR2 (NRULE_0057)	Ferredoxin reductase	ROP_70800 ROP_pROB01-04380 ROP_pROB02-01180 ROP_pROB02-01610 ROP_53800 ROP_54110 ROP_33130 ROP_45680 ROP_42790
		FDR1 (NRULE_0032)	Oxygenase electron transfer component	ROP_63950 ROP_11200 ROP_61150 ROP_58950 ROP_53850 ROP_17720 ROP_20970 ROP_21000 ROP_37440 ROP_34890 ROP_30070 ROP_28620 ROP_26720 ROP_24410 ROP_25470 ROP_25700 ROP_25780 ROP_pROB02-00900 ROP_38620 ROP_52840 ROP_40920
		FDX1 (NRULE_0034)	Putative Rieske-type ferredoxin	ROP_08600 ROP_pROB02-02050 ROP_pROB02-01600 ROP_pROB02-01580 ROP_71710 ROP_70810 ROP_58730 ROP_53630 ROP_46340 ROP_46320 ROP_44530 ROP_43970 ROP_42810 ROP_42780 ROP_40940 ROP_39230 ROP_38640 ROP_31670 ROP_28570 ROP_25670 ROP_24850 ROP_22170 ROP_20980 ROP_18030 ROP_17790 ROP_14890 ROP_14870 ROP_06010
		FADR1 (NRULE_0101)	NADH-dependent flavin reductase	ROP_46610 ROP_14290 ROP_14560 ROP_16720 ROP_20930 ROP_22110 ROP_22400 ROP_25720 ROP_31700 ROP_33000 ROP_33620 ROP_33700 ROP_37400 ROP_43020 ROP_44570 ROP_46230 ROP_53460 ROP_58570 ROP_71800 ROP_pROB02-01940 ROP_13730
Protocatechuate degradation (beta-ketoadipate pathway)(NFUNC_0014)
必須	A	PCAG (NRULE_0066)	Protocatechuate 3,4-dioxygenase alpha subunit	ROP_10520 ROP_10510
		PCAH (NRULE_0067)	Protocatechuate 3,4-dioxygenase beta subunit	ROP_10510
		PCAB (NRULE_0068)	3-carboxy-cis,cis-muconate cycloisomerase	ROP_10530
		PCAC (NRULE_0069)	4-carboxymuconolactone decarboxylase	ROP_10540
		PCAD (NRULE_0070)	3-oxoadipate enol-lactonase	ROP_10540
		PCAI (NRULE_0072)	3-oxoadipate CoA-transferase subunit A	ROP_10500 ROP_37640
		PCAJ (NRULE_0073)	3-oxoadipate CoA-transferase subunit B	ROP_10490
		PCAF (NRULE_0074)	Beta-ketoadipyl-CoA thiolase	ROP_27210 ROP_10560 ROP_22440 ROP_25860
	B	PCAG (NRULE_0066)	Protocatechuate 3,4-dioxygenase alpha subunit	ROP_10520 ROP_10510
		PCAH (NRULE_0067)	Protocatechuate 3,4-dioxygenase beta subunit	ROP_10510
		PCAB (NRULE_0068)	3-carboxy-cis,cis-muconate cycloisomerase	ROP_10530
		PCAL (NRULE_0071)	3-oxoadipate enol-lactone hydrolase/4-carboxymuconolactone decarboxylase	ROP_10540
		PCAI (NRULE_0072)	3-oxoadipate CoA-transferase subunit A	ROP_37640 ROP_10500
		PCAJ (NRULE_0073)	3-oxoadipate CoA-transferase subunit B	ROP_10490
		PCAF (NRULE_0074)	Beta-ketoadipyl-CoA thiolase	ROP_25860 ROP_10560 ROP_27210 ROP_22440
Streptogramin resistance(NFUNC_0027)
必須	B	VGB (NRULE_0114)	Virginiamycin B lyase	ROP_25930
Thiocyanate hydrolase(NFUNC_0003)
必須	A	SCNA (NRULE_0003)	Thiocyanate hydrolase subunit alpha	ROP_43450 ROP_43460
		SCNB (NRULE_0004)	Thiocyanate hydrolase subunit beta	ROP_43450 ROP_43460
		SCNC (NRULE_0005)	Thiocyanate hydrolase subunit gamma	ROP_43440
	B	SCNA (NRULE_0003)	Thiocyanate hydrolase subunit alpha	ROP_43450 ROP_43460
	B	SCNC (NRULE_0005)	Thiocyanate hydrolase subunit gamma	ROP_43440
	C	SCNB (NRULE_0004)	Thiocyanate hydrolase subunit beta	ROP_43450 ROP_43460
	C	SCNC (NRULE_0005)	Thiocyanate hydrolase subunit gamma	ROP_43440
Trehalose biosynthesis (from maltooligosaccharide)(NFUNC_0037)
必須	A	TREY (NRULE_0140)	Maltooligosyl trehalose synthase	ROP_07850
必須	A	TREZ (NRULE_0141)	Malto-oligosyltrehalose trehalohydrolase	ROP_07900
任意		GLGX (NRULE_0139)	Glycogen debranching enzyme	ROP_07840 ROP_65030
Trehalose biosynthesis (from maltose)(NFUNC_0034)
必須	B	TRES (NRULE_0128)	Trehalose synthase	ROP_61000
Trehalose biosynthesis (from NDP-glucose and glucose-6-phosphate)(NFUNC_0031)
必須	A	TPS (NRULE_0119)	Trehalose-phosphate synthase	ROP_02140 ROP_48060
必須	A	TPP (NRULE_0120)	Trehalose-6-phosphate phosphatase	ROP_44090
Uptake of osmoprotectant(NFUNC_0061)
必須	B	EHUB (NRULE_0216)	Ectoine ABC transporter substrate-binding protein	ROP_42670
		EHUC (NRULE_0217)	Ectoine ABC transporter permease protein	ROP_42680
		EHUD (NRULE_0218)	Ectoine ABC transporter permease protein	ROP_42690
		EHUA (NRULE_0219)	Ectoine ABC transporter ATP-binding protein	ROP_42700
	C	BCCT (NRULE_0220)	BCCT family transporter	ROP_14860 ROP_57210
Vitamin B6 biosynthesis (PdxS/PdxT pathway)(NFUNC_0059)
必須	A	PDXS (NRULE_0206)	Pyridoxal biosynthesis lyase PdxS	ROP_68630
必須	A	PDXT (NRULE_0207)	Glutamine amidotransferase subunit PdxT	ROP_68670

ゲノム配列情報

BioProject ID	PRJDA34839
ローカスタグ	ROP
INSDC entries	AP011115
ステータス	Complete
解析状況
コンティグ数	6
サイズ(bp)	8,834,939
遺伝子数	8,203
フィニッシングゴール
アセンブル方法
冗長度
シーケンス方法

参考文献

データダウンロード

ゲノム塩基配列	CDS塩基配列	CDSアミノ酸変換配列	遺伝子/ORF リスト
FASTA gz	FASTA gz	FASTA gz	TSV uncompressed

2.5 MB	2.4 MB	1.6 MB	616.6 KB

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