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Microbe : Escherichia fergusonii

Microbe Description

NBRC No. 102419
Scientific name Escherichia fergusonii
Synonymous name Not assigned
History IAM 14443 <- ATCC 35469 <- CDC 0568-73 <- Missouri State Health Dept.
Other culture collection No. ATCC 35469=CCUG 18766=CIP 103357=CIP 104947=DSM 13698=IAM 14443=JCM 21226=LMG 7866=NCTC 12128
Other No.
Reference
Not assigned

Functional Potential >>Details

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TypePattern Component Gene CDS
Acid resistance (by GABA antiporter)(NFUNC_0071)
RequireA
GAD
(NRULE_0231)
Glutamate decarboxylaseEFER_1575 EFER_2817
GADC
(NRULE_0234)
Glutamate/gamma-aminobutyrate antiporterEFER_1577
Alanine racemization(NFUNC_0063)
RequireA
ALR
(NRULE_0228)
Alanine racemaseEFER_1765 EFER_4143 EFER_3824
Aminoglycoside resistance (by aminoglycoside O-phosphotransferase)(NFUNC_0043)
RequireA
APH6
(NRULE_0155)
Streptomycin 6-kinaseEFER_p0049
B
APH3
(NRULE_0156)
Aminoglycoside 3'-phosphotransferaseEFER_p0048
Ampicillin resistance(NFUNC_0046)
RequireA
BLAA
(NRULE_0122)
Beta-lactamase class AEFER_1643 EFER_p0036
Anthranilate biosynthesis(NFUNC_0038)
RequireA
GLAT
(NRULE_0142)
Glutamine amidotransferaseEFER_3333 EFER_1693
TRPE
(NRULE_0143)
Anthranilate synthase component IEFER_1692
Aromatic azo compounds degradation(NFUNC_0073)
RequireA
AZOR
(NRULE_0236)
FMN-dependent NADH-azoreductaseEFER_1589
Arsenical resistance(NFUNC_0004)
RequireA
ARSB1
(NRULE_0015)
Arsenical pump membrane proteinEFER_3498
ARSC1
(NRULE_0017)
Arsenate reductaseEFER_3499 EFER_0681
Bacitracin resistance(NFUNC_0022)
RequireA
UPPP
(NRULE_0097)
Undecaprenyl-diphosphataseEFER_3002
Beta-lactam antibiotic resistance(NFUNC_0033)
RequireA
BLAA
(NRULE_0122)
Beta-lactamase class AEFER_p0036 EFER_1643
C
BLAC
(NRULE_0124)
Beta-lactamase class CEFER_4204
Biotin biosynthesis(NFUNC_0051)
RequireA
BIOF
(NRULE_0182)
8-amino-7-oxononanoate synthaseEFER_2337
BIOA
(NRULE_0183)
Adenosylmethionine-8-amino-7-oxononanoate aminotransferaseEFER_2339
BIOD
(NRULE_0184)
ATP-dependent dethiobiotin synthetase BioDEFER_2334 EFER_1443
BIOB
(NRULE_0185)
Biotin synthaseEFER_2338
Catechol degradation (beta-ketoadipate pathway)(NFUNC_0013)
RequireA
CATA
(NRULE_0052)
Catechol 1,2-dioxygenaseEFER_1481
CATB2
(NRULE_0053)
(Chloro)muconate cycloisomeraseEFER_1479
CATC
(NRULE_0054)
Muconolactone isomeraseEFER_1480
PCAD
(NRULE_0070)
3-oxoadipate enol-lactonaseEFER_1632
PCAI
(NRULE_0072)
3-oxoadipate CoA-transferase subunit AEFER_1636
PCAJ
(NRULE_0073)
3-oxoadipate CoA-transferase subunit BEFER_1635
PCAF
(NRULE_0074)
Beta-ketoadipyl-CoA thiolaseEFER_1634 EFER_1599
B
CATA
(NRULE_0052)
Catechol 1,2-dioxygenaseEFER_1481
CATC
(NRULE_0054)
Muconolactone isomeraseEFER_1480
PCAD
(NRULE_0070)
3-oxoadipate enol-lactonaseEFER_1632
PCAI
(NRULE_0072)
3-oxoadipate CoA-transferase subunit AEFER_1636
PCAJ
(NRULE_0073)
3-oxoadipate CoA-transferase subunit BEFER_1635
PCAF
(NRULE_0074)
Beta-ketoadipyl-CoA thiolaseEFER_1634 EFER_1599
CATB1
(NRULE_0386)
Muconate cycloisomeraseEFER_1479
Cephalosporin resistance(NFUNC_0048)
RequireA
BLAC
(NRULE_0124)
Beta-lactamase class CEFER_4204
Participant 
BLAA
(NRULE_0122)
Beta-lactamase class AEFER_p0036 EFER_1643
Folate biosynthesis(NFUNC_0044)
RequireA
GLAT
(NRULE_0142)
Glutamine amidotransferaseEFER_1693 EFER_3333
DHPS
(NRULE_0144)
Dihydropteroate synthaseEFER_3154
FOLM
(NRULE_0146)
Dihydrofolate reductase FolMEFER_1431
FOLB
(NRULE_0158)
Dihydroneopterin aldolaseEFER_0860 EFER_3003
FOLK
(NRULE_0159)
2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinaseEFER_0165
FOLC
(NRULE_0160)
Bifunctional protein FolCEFER_0848
PABB
(NRULE_0161)
Para-aminobenzoate synthase component IEFER_1264
PABC
(NRULE_0162)
Aminodeoxychorismate lyaseEFER_1831
B
GLAT
(NRULE_0142)
Glutamine amidotransferaseEFER_1693 EFER_3333
DHPS
(NRULE_0144)
Dihydropteroate synthaseEFER_3154
FOLA
(NRULE_0147)
Dihydrofolate reductaseEFER_0056
FOLB
(NRULE_0158)
Dihydroneopterin aldolaseEFER_3003 EFER_0860
FOLK
(NRULE_0159)
2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinaseEFER_0165
FOLC
(NRULE_0160)
Bifunctional protein FolCEFER_0848
PABB
(NRULE_0161)
Para-aminobenzoate synthase component IEFER_1264
PABC
(NRULE_0162)
Aminodeoxychorismate lyaseEFER_1831
GABA biosynthesis(NFUNC_0066)
RequireA
GAD
(NRULE_0231)
Glutamate decarboxylaseEFER_1575 EFER_2817
4-hydroxyphenylacetate degradation(NFUNC_0068)
RequireA
HPAB1
(NRULE_0085)
4-hydroxyphenylacetate 3-monooxygenase oxygenase componentEFER_3070
HPAC
(NRULE_0102)
4-hydroxyphenylacetate 3-monooxygenase reductase componentEFER_3071
HPAD1
(NRULE_0193)
Homoprotocatechuate 2,3-dioxygenaseEFER_3064
HPAE
(NRULE_0195)
5-carboxymethyl-2-hydroxymuconic-semialdehyde dehydrogenaseEFER_3063
HPAF
(NRULE_0196)
5-carboxymethyl-2-hydroxymuconate Delta-isomeraseEFER_3065
HPAG
(NRULE_0197)
5-oxopent-3-ene-1,2,5-tricarboxylate decarboxylase/2-hydroxyhepta-2,4-diene-1,7-dioate Delta-isomeraseEFER_3062
HPAH
(NRULE_0198)
2-oxo-hepta-3-ene-1,7-dioate hydrataseEFER_3066
HPAI
(NRULE_0199)
2,4-dihydroxyhept-2-ene-1,7-dioate aldolaseEFER_3067
C
HPAB1
(NRULE_0085)
4-hydroxyphenylacetate 3-monooxygenase oxygenase componentEFER_3070
FADR1
(NRULE_0101)
NADH-dependent flavin reductaseEFER_3071 EFER_0802 EFER_1469 EFER_1476
HPAD1
(NRULE_0193)
Homoprotocatechuate 2,3-dioxygenaseEFER_3064
HPAE
(NRULE_0195)
5-carboxymethyl-2-hydroxymuconic-semialdehyde dehydrogenaseEFER_3063
HPAF
(NRULE_0196)
5-carboxymethyl-2-hydroxymuconate Delta-isomeraseEFER_3065
HPAG
(NRULE_0197)
5-oxopent-3-ene-1,2,5-tricarboxylate decarboxylase/2-hydroxyhepta-2,4-diene-1,7-dioate Delta-isomeraseEFER_3062
HPAH
(NRULE_0198)
2-oxo-hepta-3-ene-1,7-dioate hydrataseEFER_3066
HPAI
(NRULE_0199)
2,4-dihydroxyhept-2-ene-1,7-dioate aldolaseEFER_3067
Kanamycin resistance(NFUNC_0052)
RequireC
APH3
(NRULE_0156)
Aminoglycoside 3'-phosphotransferaseEFER_p0048
Macrolide antibiotic resistance(NFUNC_0045)
RequireB
RLMA
(NRULE_0165)
23S rRNA (guanine-N(1))-methyltransferaseEFER_1253
C
MACA
(NRULE_0166)
Macrolide-specific efflux protein MacAEFER_1026
MACB
(NRULE_0167)
Macrolide export ATP-binding/permease protein MacBEFER_1027
Metal-binding protein(NFUNC_0105)
RequireA
MOP
(NRULE_0322)
Putative molybdenum-binding proteinEFER_0345 EFER_2344 EFER_2348
B
MODE
(NRULE_0323)
Putative molybdate-dependent transcriptional regulatorEFER_2348
C
MODA
(NRULE_0324)
Molybdate ABC transporter substrate-binding proteinEFER_4126 EFER_0748 EFER_2346 EFER_3856
E
CUER
(NRULE_0328)
Copper-responsive transcriptional regulator CueREFER_0545
F
SOXR
(NRULE_0329)
Redox-sensitive transcriptional activator SoxREFER_4164
G
ZNTR
(NRULE_0330)
Zinc-responsive transcriptional regulator ZntREFER_3276
H
NIKR
(NRULE_0331)
Nickel-responsive transcriptional regulator NikREFER_3468
I
ISCR
(NRULE_0332)
Rrf2 family transcriptional regulator IscREFER_0641
Molybdate transport (ABC transporter)(NFUNC_0097)
RequireA
MODA
(NRULE_0324)
Molybdate ABC transporter substrate-binding proteinEFER_0748 EFER_4126 EFER_2346 EFER_3856
Participant 
MODE
(NRULE_0323)
Putative molybdate-dependent transcriptional regulatorEFER_2348
 
MODB
(NRULE_0325)
Molybdate ABC transporter permease proteinEFER_2345
 
MODC
(NRULE_0326)
Molybdate ABC transporter ATP-binding proteinEFER_2344
(R)-pantothenate biosynthesis(NFUNC_0030)
RequireA
PAND
(NRULE_0115)
Aspartate 1-decarboxylaseEFER_0152
PANB
(NRULE_0116)
3-methyl-2-oxobutanoate hydroxymethyltransferaseEFER_0156
PANE
(NRULE_0117)
2-dehydropantoate 2-reductaseEFER_2600
PANC
(NRULE_0118)
Pantothenate synthetaseEFER_0155
Penicillin resistance(NFUNC_0047)
RequireA
BLAA
(NRULE_0122)
Beta-lactamase class AEFER_p0036 EFER_1643
Phenol degradation(NFUNC_0028)
RequireB
PHEA1
(NRULE_0083)
Aromatic ring hydroxylaseEFER_3070
Participant 
FDR1
(NRULE_0032)
Oxygenase electron transfer componentEFER_1484 EFER_0801 EFER_1017 EFER_1604
 
FDX1
(NRULE_0034)
Putative Rieske-type ferredoxinEFER_0798 EFER_1482
 
FADR1
(NRULE_0101)
NADH-dependent flavin reductaseEFER_1476 EFER_0802 EFER_1469 EFER_3071
Phytic acid hydrolysis(NFUNC_0085)
RequireB
APPA
(NRULE_0259)
Periplasmic AppA proteinEFER_3043
Polymyxin resistance(NFUNC_0036)
RequireA
ARNA
(NRULE_0132)
Bifunctional polymyxin resistance protein ArnAEFER_0914
ARNB
(NRULE_0133)
UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferaseEFER_0916
ARNC
(NRULE_0134)
Undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferaseEFER_0915
ARND
(NRULE_0135)
Probable 4-deoxy-4-formamido-L-arabinose-phosphoundecaprenol deformylase ArnDEFER_0913
ARNE
(NRULE_0136)
Probable 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnEEFER_0911
ARNF
(NRULE_0137)
Probable 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnFEFER_0910
ARNT
(NRULE_0138)
Undecaprenyl phosphate-alpha-4-amino-4-deoxy-L-arabinose arabinosyl transferaseEFER_0912
Protocatechuate degradation (beta-ketoadipate pathway)(NFUNC_0014)
RequireA
PCAG
(NRULE_0066)
Protocatechuate 3,4-dioxygenase alpha subunitEFER_1501
PCAH
(NRULE_0067)
Protocatechuate 3,4-dioxygenase beta subunitEFER_1502
PCAB
(NRULE_0068)
3-carboxy-cis,cis-muconate cycloisomeraseEFER_1633
PCAC
(NRULE_0069)
4-carboxymuconolactone decarboxylaseEFER_1631
PCAD
(NRULE_0070)
3-oxoadipate enol-lactonaseEFER_1632
PCAI
(NRULE_0072)
3-oxoadipate CoA-transferase subunit AEFER_1636
PCAJ
(NRULE_0073)
3-oxoadipate CoA-transferase subunit BEFER_1635
PCAF
(NRULE_0074)
Beta-ketoadipyl-CoA thiolaseEFER_1634 EFER_1599
Riboflavin biosynthesis(NFUNC_0058)
RequireA
RIBB
(NRULE_0200)
3,4-dihydroxy-2-butanone 4-phosphate synthaseEFER_2990
RIBA
(NRULE_0201)
GTP cyclohydrolase-2EFER_1677
RIBD
(NRULE_0202)
Riboflavin biosynthesis protein RibDEFER_2611
RIBH
(NRULE_0203)
6,7-dimethyl-8-ribityllumazine synthaseEFER_2610
RIBE
(NRULE_0204)
Riboflavin synthaseEFER_1382
Participant 
RIBF
(NRULE_0205)
Riboflavin biosynthesis protein RibFEFER_0017
Streptomycin resistance(NFUNC_0054)
RequireC
APH6
(NRULE_0155)
Streptomycin 6-kinaseEFER_p0049
Participant 
APH3
(NRULE_0156)
Aminoglycoside 3'-phosphotransferaseEFER_p0048
Trehalose biosynthesis (from NDP-glucose and glucose-6-phosphate)(NFUNC_0031)
RequireA
TPS
(NRULE_0119)
Trehalose-phosphate synthaseEFER_1127
TPP
(NRULE_0120)
Trehalose-6-phosphate phosphataseEFER_1126
Uptake of osmoprotectant(NFUNC_0061)
RequireA
OPUAC
(NRULE_0213)
Osmoprotectant ABC transporter substrate-binding proteinEFER_0391
OPUAB
(NRULE_0214)
Osmoprotectant ABC transporter permease proteinEFER_0392
OPUAA
(NRULE_0215)
Osmoprotectant ABC transporter ATP-binding proteinEFER_1445 EFER_0393
C
BCCT
(NRULE_0220)
BCCT family transporterEFER_0048
D
PROP
(NRULE_0221)
Osmoprotectant transporterEFER_4170
E
OPUE
(NRULE_0222)
Sodium/proline symporterEFER_1912
Vitamin B6 biosynthesis (PdxA/PdxJ pathway)(NFUNC_0060)
RequireA
EPD
(NRULE_0208)
D-erythrose-4-phosphate dehydrogenaseEFER_2859
PDXB
(NRULE_0209)
Erythronate-4-phosphate dehydrogenaseEFER_0843
SERC
(NRULE_0210)
Phosphoserine aminotransferaseEFER_1052
PDXA
(NRULE_0211)
4-hydroxythreonine-4-phosphate dehydrogenaseEFER_0063
PDXJ
(NRULE_0212)
Pyridoxine 5'-phosphate synthaseEFER_0510

Genomic Overview

BioProject IDPRJNA33369
Locus_tagEFER
INSDC entriesCU928158
Sequence statusComplete
Current status
Contig number2
Size(bp) 4,643,861
Gene 4,324
Finishing goal
Assembly method
Coverage
Technology
Reference

Data Download

Genomic nucleotide sequence Nucleotide sequence of the coding regions Translation of the coding sequneces List of genes / ORFs
FASTA
gz
FASTA
gz
FASTA
gz
TSV
uncompressed
1.4 MB 1.3 MB 908.8 KB 412.2 KB