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微生物 : Escherichia fergusonii

微生物株情報

NBRC番号 102419
学名 Escherichia fergusonii
別名（シノニム） 該当データなし
由来 IAM 14443 <- ATCC 35469 <- CDC 0568-73 <- Missouri State Health Dept.
他保存機関番号 ATCC 35469=CCUG 18766=CIP 103357=CIP 104947=DSM 13698=IAM 14443=JCM 21226=LMG 7866=NCTC 12128
他株番号
参考文献
該当データなし

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タイプパターン 構成遺伝子 該当CDS
Acid resistance (by GABA antiporter)(NFUNC_0071)
必須A
GAD
(NRULE_0231)
Glutamate decarboxylaseEFER_1575 EFER_2817
GADC
(NRULE_0234)
Glutamate/gamma-aminobutyrate antiporterEFER_1577
Alanine racemization(NFUNC_0063)
必須A
ALR
(NRULE_0228)
Alanine racemaseEFER_1765 EFER_4143 EFER_3824
Aminoglycoside resistance (by aminoglycoside O-phosphotransferase)(NFUNC_0043)
必須A
APH6
(NRULE_0155)
Streptomycin 6-kinaseEFER_p0049
B
APH3
(NRULE_0156)
Aminoglycoside 3'-phosphotransferaseEFER_p0048
Ampicillin resistance(NFUNC_0046)
必須A
BLAA
(NRULE_0122)
Beta-lactamase class AEFER_1643 EFER_p0036
Anthranilate biosynthesis(NFUNC_0038)
必須A
GLAT
(NRULE_0142)
Glutamine amidotransferaseEFER_3333 EFER_1693
TRPE
(NRULE_0143)
Anthranilate synthase component IEFER_1692
Aromatic azo compounds degradation(NFUNC_0073)
必須A
AZOR
(NRULE_0236)
FMN-dependent NADH-azoreductaseEFER_1589
Arsenical resistance(NFUNC_0004)
必須A
ARSB1
(NRULE_0015)
Arsenical pump membrane proteinEFER_3498
ARSC1
(NRULE_0017)
Arsenate reductaseEFER_3499 EFER_0681
Bacitracin resistance(NFUNC_0022)
必須A
UPPP
(NRULE_0097)
Undecaprenyl-diphosphataseEFER_3002
Beta-lactam antibiotic resistance(NFUNC_0033)
必須A
BLAA
(NRULE_0122)
Beta-lactamase class AEFER_p0036 EFER_1643
C
BLAC
(NRULE_0124)
Beta-lactamase class CEFER_4204
Biotin biosynthesis(NFUNC_0051)
必須A
BIOF
(NRULE_0182)
8-amino-7-oxononanoate synthaseEFER_2337
BIOA
(NRULE_0183)
Adenosylmethionine-8-amino-7-oxononanoate aminotransferaseEFER_2339
BIOD
(NRULE_0184)
ATP-dependent dethiobiotin synthetase BioDEFER_2334 EFER_1443
BIOB
(NRULE_0185)
Biotin synthaseEFER_2338
Catechol degradation (beta-ketoadipate pathway)(NFUNC_0013)
必須A
CATA
(NRULE_0052)
Catechol 1,2-dioxygenaseEFER_1481
CATB2
(NRULE_0053)
(Chloro)muconate cycloisomeraseEFER_1479
CATC
(NRULE_0054)
Muconolactone isomeraseEFER_1480
PCAD
(NRULE_0070)
3-oxoadipate enol-lactonaseEFER_1632
PCAI
(NRULE_0072)
3-oxoadipate CoA-transferase subunit AEFER_1636
PCAJ
(NRULE_0073)
3-oxoadipate CoA-transferase subunit BEFER_1635
PCAF
(NRULE_0074)
Beta-ketoadipyl-CoA thiolaseEFER_1634 EFER_1599
B
CATA
(NRULE_0052)
Catechol 1,2-dioxygenaseEFER_1481
CATC
(NRULE_0054)
Muconolactone isomeraseEFER_1480
PCAD
(NRULE_0070)
3-oxoadipate enol-lactonaseEFER_1632
PCAI
(NRULE_0072)
3-oxoadipate CoA-transferase subunit AEFER_1636
PCAJ
(NRULE_0073)
3-oxoadipate CoA-transferase subunit BEFER_1635
PCAF
(NRULE_0074)
Beta-ketoadipyl-CoA thiolaseEFER_1634 EFER_1599
CATB1
(NRULE_0386)
Muconate cycloisomeraseEFER_1479
Cephalosporin resistance(NFUNC_0048)
必須A
BLAC
(NRULE_0124)
Beta-lactamase class CEFER_4204
任意 
BLAA
(NRULE_0122)
Beta-lactamase class AEFER_p0036 EFER_1643
Folate biosynthesis(NFUNC_0044)
必須A
GLAT
(NRULE_0142)
Glutamine amidotransferaseEFER_1693 EFER_3333
DHPS
(NRULE_0144)
Dihydropteroate synthaseEFER_3154
FOLM
(NRULE_0146)
Dihydrofolate reductase FolMEFER_1431
FOLB
(NRULE_0158)
Dihydroneopterin aldolaseEFER_0860 EFER_3003
FOLK
(NRULE_0159)
2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinaseEFER_0165
FOLC
(NRULE_0160)
Bifunctional protein FolCEFER_0848
PABB
(NRULE_0161)
Para-aminobenzoate synthase component IEFER_1264
PABC
(NRULE_0162)
Aminodeoxychorismate lyaseEFER_1831
B
GLAT
(NRULE_0142)
Glutamine amidotransferaseEFER_1693 EFER_3333
DHPS
(NRULE_0144)
Dihydropteroate synthaseEFER_3154
FOLA
(NRULE_0147)
Dihydrofolate reductaseEFER_0056
FOLB
(NRULE_0158)
Dihydroneopterin aldolaseEFER_3003 EFER_0860
FOLK
(NRULE_0159)
2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinaseEFER_0165
FOLC
(NRULE_0160)
Bifunctional protein FolCEFER_0848
PABB
(NRULE_0161)
Para-aminobenzoate synthase component IEFER_1264
PABC
(NRULE_0162)
Aminodeoxychorismate lyaseEFER_1831
GABA biosynthesis(NFUNC_0066)
必須A
GAD
(NRULE_0231)
Glutamate decarboxylaseEFER_1575 EFER_2817
4-hydroxyphenylacetate degradation(NFUNC_0068)
必須A
HPAB1
(NRULE_0085)
4-hydroxyphenylacetate 3-monooxygenase oxygenase componentEFER_3070
HPAC
(NRULE_0102)
4-hydroxyphenylacetate 3-monooxygenase reductase componentEFER_3071
HPAD1
(NRULE_0193)
Homoprotocatechuate 2,3-dioxygenaseEFER_3064
HPAE
(NRULE_0195)
5-carboxymethyl-2-hydroxymuconic-semialdehyde dehydrogenaseEFER_3063
HPAF
(NRULE_0196)
5-carboxymethyl-2-hydroxymuconate Delta-isomeraseEFER_3065
HPAG
(NRULE_0197)
5-oxopent-3-ene-1,2,5-tricarboxylate decarboxylase/2-hydroxyhepta-2,4-diene-1,7-dioate Delta-isomeraseEFER_3062
HPAH
(NRULE_0198)
2-oxo-hepta-3-ene-1,7-dioate hydrataseEFER_3066
HPAI
(NRULE_0199)
2,4-dihydroxyhept-2-ene-1,7-dioate aldolaseEFER_3067
C
HPAB1
(NRULE_0085)
4-hydroxyphenylacetate 3-monooxygenase oxygenase componentEFER_3070
FADR1
(NRULE_0101)
NADH-dependent flavin reductaseEFER_3071 EFER_0802 EFER_1469 EFER_1476
HPAD1
(NRULE_0193)
Homoprotocatechuate 2,3-dioxygenaseEFER_3064
HPAE
(NRULE_0195)
5-carboxymethyl-2-hydroxymuconic-semialdehyde dehydrogenaseEFER_3063
HPAF
(NRULE_0196)
5-carboxymethyl-2-hydroxymuconate Delta-isomeraseEFER_3065
HPAG
(NRULE_0197)
5-oxopent-3-ene-1,2,5-tricarboxylate decarboxylase/2-hydroxyhepta-2,4-diene-1,7-dioate Delta-isomeraseEFER_3062
HPAH
(NRULE_0198)
2-oxo-hepta-3-ene-1,7-dioate hydrataseEFER_3066
HPAI
(NRULE_0199)
2,4-dihydroxyhept-2-ene-1,7-dioate aldolaseEFER_3067
Kanamycin resistance(NFUNC_0052)
必須C
APH3
(NRULE_0156)
Aminoglycoside 3'-phosphotransferaseEFER_p0048
Macrolide antibiotic resistance(NFUNC_0045)
必須B
RLMA
(NRULE_0165)
23S rRNA (guanine-N(1))-methyltransferaseEFER_1253
C
MACA
(NRULE_0166)
Macrolide-specific efflux protein MacAEFER_1026
MACB
(NRULE_0167)
Macrolide export ATP-binding/permease protein MacBEFER_1027
Metal-binding protein(NFUNC_0105)
必須A
MOP
(NRULE_0322)
Putative molybdenum-binding proteinEFER_0345 EFER_2344 EFER_2348
B
MODE
(NRULE_0323)
Putative molybdate-dependent transcriptional regulatorEFER_2348
C
MODA
(NRULE_0324)
Molybdate ABC transporter substrate-binding proteinEFER_4126 EFER_0748 EFER_2346 EFER_3856
E
CUER
(NRULE_0328)
Copper-responsive transcriptional regulator CueREFER_0545
F
SOXR
(NRULE_0329)
Redox-sensitive transcriptional activator SoxREFER_4164
G
ZNTR
(NRULE_0330)
Zinc-responsive transcriptional regulator ZntREFER_3276
H
NIKR
(NRULE_0331)
Nickel-responsive transcriptional regulator NikREFER_3468
I
ISCR
(NRULE_0332)
Rrf2 family transcriptional regulator IscREFER_0641
Molybdate transport (ABC transporter)(NFUNC_0097)
必須A
MODA
(NRULE_0324)
Molybdate ABC transporter substrate-binding proteinEFER_0748 EFER_4126 EFER_2346 EFER_3856
任意 
MODE
(NRULE_0323)
Putative molybdate-dependent transcriptional regulatorEFER_2348
 
MODB
(NRULE_0325)
Molybdate ABC transporter permease proteinEFER_2345
 
MODC
(NRULE_0326)
Molybdate ABC transporter ATP-binding proteinEFER_2344
(R)-pantothenate biosynthesis(NFUNC_0030)
必須A
PAND
(NRULE_0115)
Aspartate 1-decarboxylaseEFER_0152
PANB
(NRULE_0116)
3-methyl-2-oxobutanoate hydroxymethyltransferaseEFER_0156
PANE
(NRULE_0117)
2-dehydropantoate 2-reductaseEFER_2600
PANC
(NRULE_0118)
Pantothenate synthetaseEFER_0155
Penicillin resistance(NFUNC_0047)
必須A
BLAA
(NRULE_0122)
Beta-lactamase class AEFER_p0036 EFER_1643
Phenol degradation(NFUNC_0028)
必須B
PHEA1
(NRULE_0083)
Aromatic ring hydroxylaseEFER_3070
任意 
FDR1
(NRULE_0032)
Oxygenase electron transfer componentEFER_1484 EFER_0801 EFER_1017 EFER_1604
 
FDX1
(NRULE_0034)
Putative Rieske-type ferredoxinEFER_0798 EFER_1482
 
FADR1
(NRULE_0101)
NADH-dependent flavin reductaseEFER_1476 EFER_0802 EFER_1469 EFER_3071
Phytic acid hydrolysis(NFUNC_0085)
必須B
APPA
(NRULE_0259)
Periplasmic AppA proteinEFER_3043
Polymyxin resistance(NFUNC_0036)
必須A
ARNA
(NRULE_0132)
Bifunctional polymyxin resistance protein ArnAEFER_0914
ARNB
(NRULE_0133)
UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferaseEFER_0916
ARNC
(NRULE_0134)
Undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferaseEFER_0915
ARND
(NRULE_0135)
Probable 4-deoxy-4-formamido-L-arabinose-phosphoundecaprenol deformylase ArnDEFER_0913
ARNE
(NRULE_0136)
Probable 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnEEFER_0911
ARNF
(NRULE_0137)
Probable 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnFEFER_0910
ARNT
(NRULE_0138)
Undecaprenyl phosphate-alpha-4-amino-4-deoxy-L-arabinose arabinosyl transferaseEFER_0912
Protocatechuate degradation (beta-ketoadipate pathway)(NFUNC_0014)
必須A
PCAG
(NRULE_0066)
Protocatechuate 3,4-dioxygenase alpha subunitEFER_1501
PCAH
(NRULE_0067)
Protocatechuate 3,4-dioxygenase beta subunitEFER_1502
PCAB
(NRULE_0068)
3-carboxy-cis,cis-muconate cycloisomeraseEFER_1633
PCAC
(NRULE_0069)
4-carboxymuconolactone decarboxylaseEFER_1631
PCAD
(NRULE_0070)
3-oxoadipate enol-lactonaseEFER_1632
PCAI
(NRULE_0072)
3-oxoadipate CoA-transferase subunit AEFER_1636
PCAJ
(NRULE_0073)
3-oxoadipate CoA-transferase subunit BEFER_1635
PCAF
(NRULE_0074)
Beta-ketoadipyl-CoA thiolaseEFER_1634 EFER_1599
Riboflavin biosynthesis(NFUNC_0058)
必須A
RIBB
(NRULE_0200)
3,4-dihydroxy-2-butanone 4-phosphate synthaseEFER_2990
RIBA
(NRULE_0201)
GTP cyclohydrolase-2EFER_1677
RIBD
(NRULE_0202)
Riboflavin biosynthesis protein RibDEFER_2611
RIBH
(NRULE_0203)
6,7-dimethyl-8-ribityllumazine synthaseEFER_2610
RIBE
(NRULE_0204)
Riboflavin synthaseEFER_1382
任意 
RIBF
(NRULE_0205)
Riboflavin biosynthesis protein RibFEFER_0017
Streptomycin resistance(NFUNC_0054)
必須C
APH6
(NRULE_0155)
Streptomycin 6-kinaseEFER_p0049
任意 
APH3
(NRULE_0156)
Aminoglycoside 3'-phosphotransferaseEFER_p0048
Trehalose biosynthesis (from NDP-glucose and glucose-6-phosphate)(NFUNC_0031)
必須A
TPS
(NRULE_0119)
Trehalose-phosphate synthaseEFER_1127
TPP
(NRULE_0120)
Trehalose-6-phosphate phosphataseEFER_1126
Uptake of osmoprotectant(NFUNC_0061)
必須A
OPUAC
(NRULE_0213)
Osmoprotectant ABC transporter substrate-binding proteinEFER_0391
OPUAB
(NRULE_0214)
Osmoprotectant ABC transporter permease proteinEFER_0392
OPUAA
(NRULE_0215)
Osmoprotectant ABC transporter ATP-binding proteinEFER_1445 EFER_0393
C
BCCT
(NRULE_0220)
BCCT family transporterEFER_0048
D
PROP
(NRULE_0221)
Osmoprotectant transporterEFER_4170
E
OPUE
(NRULE_0222)
Sodium/proline symporterEFER_1912
Vitamin B6 biosynthesis (PdxA/PdxJ pathway)(NFUNC_0060)
必須A
EPD
(NRULE_0208)
D-erythrose-4-phosphate dehydrogenaseEFER_2859
PDXB
(NRULE_0209)
Erythronate-4-phosphate dehydrogenaseEFER_0843
SERC
(NRULE_0210)
Phosphoserine aminotransferaseEFER_1052
PDXA
(NRULE_0211)
4-hydroxythreonine-4-phosphate dehydrogenaseEFER_0063
PDXJ
(NRULE_0212)
Pyridoxine 5'-phosphate synthaseEFER_0510

ゲノム配列情報

BioProject IDPRJNA33369
ローカスタグEFER
INSDC entriesCU928158
ステータスComplete
解析状況
コンティグ数2
サイズ(bp) 4,643,861
遺伝子数 4,324
フィニッシングゴール
アセンブル方法
冗長度
シーケンス方法
参考文献

データダウンロード

ゲノム塩基配列 CDS塩基配列 CDSアミノ酸変換配列 遺伝子/ORF リスト
FASTA
gz		 FASTA
gz		 FASTA
gz		 TSV
uncompressed
1.4 MB 1.3 MB 908.8 KB 412.2 KB