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推定保有機能 : Sphingobium japonicum

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タイプパターン 構成遺伝子 該当CDS
Alanine racemization(NFUNC_0063)
必須A
ALR
(NRULE_0228)
Alanine racemaseSJA_C1-16990
n-alkane hydroxylation(NFUNC_0008)
必須A
CYP153
(NRULE_0041)
Cytochrome P450 CYP153
B
ALKB
(NRULE_0024)
Alkane 1-monooxygenase
C
MMA
(NRULE_0027)
Multicomponent monooxygenase alpha subunitSJA_C1-11990 SJA_C1-12010
MMB
(NRULE_0028)
Multicomponent monooxygenase beta subunitSJA_C1-11990 SJA_C1-12010
FDR1
(NRULE_0032)
Oxygenase electron transfer componentSJA_C1-12030 SJA_C1-05160 SJA_P1-01380
MME
(NRULE_0033)
Multicomponent monooxygenase effector proteinSJA_C1-12000
任意 
RUBA
(NRULE_0039)
Rubredoxin
 
RUBB
(NRULE_0040)
Rubredoxin reductase
 
MMG1
(NRULE_0029)
Multicomponent monooxygenase gamma subunitSJA_C1-12020
 
MMG2
(NRULE_0030)
Multicomponent monooxygenase gamma subunit
 
MMG3
(NRULE_0031)
Multicomponent monooxygenase gamma subunit
 
FDX1
(NRULE_0034)
Putative Rieske-type ferredoxinSJA_C2-04080 SJA_P1-01460 SJA_C1-05560 SJA_C1-02290 SJA_C2-03710 SJA_C1-30530 SJA_C1-28540 SJA_C1-27080 SJA_C1-25240 SJA_C1-25220 SJA_C1-11830
Aminoglycoside resistance (by aminoglycoside O-phosphotransferase)(NFUNC_0043)
必須A
APH6
(NRULE_0155)
Streptomycin 6-kinaseSJA_C1-33100
B
APH3
(NRULE_0156)
Aminoglycoside 3'-phosphotransferase
C
APH7
(NRULE_0157)
Hygromycin-B 7''-O-kinase
D
HPH
(NRULE_0174)
Hygromycin-B 4-O-kinase
Ampicillin resistance(NFUNC_0046)
必須A
BLAA
(NRULE_0122)
Beta-lactamase class ASJA_C1-31380 SJA_C1-21720
任意 
BLAB
(NRULE_0123)
Metallo-beta-lactamase
 
BLAD
(NRULE_0125)
Beta-lactamase class D
Aniline degradation (conversion into catechol)(NFUNC_0075)
必須A
ATDA1
(NRULE_0240)
Gamma-glutamylanilide synthetase
ATDA3
(NRULE_0357)
Aniline dioxygenase large subunit
ATDA4
(NRULE_0358)
Aniline dioxygenase small subunit
任意 
ATDA2
(NRULE_0241)
Putative gamma-glutamylanilide hydrolase
 
FDR1
(NRULE_0032)
Oxygenase electron transfer componentSJA_C1-05160 SJA_C1-12030 SJA_P1-01380
 
FDX1
(NRULE_0034)
Putative Rieske-type ferredoxinSJA_C2-03710 SJA_C1-02290 SJA_C1-05560 SJA_C1-11830 SJA_C1-25220 SJA_C1-25240 SJA_C1-27080 SJA_C1-28540 SJA_C1-30530 SJA_C2-04080 SJA_P1-01460
 
FDR2
(NRULE_0057)
Ferredoxin reductaseSJA_C1-25250
Anthranilate biosynthesis(NFUNC_0038)
必須A
GLAT
(NRULE_0142)
Glutamine amidotransferaseSJA_C1-08380
TRPE
(NRULE_0143)
Anthranilate synthase component ISJA_C1-16100
Anthranilate degradation (via hydroxylation)(NFUNC_0018)
必須A
ANTA
(NRULE_0044)
Anthranilate 1,2-dioxygenase large subunit
ANTB
(NRULE_0045)
Anthranilate 1,2-dioxygenase small subunit
任意 
ANTC
(NRULE_0081)
Anthranilate 1,2-dioxygenase electron transfer component
 
FDR1
(NRULE_0032)
Oxygenase electron transfer componentSJA_C1-05160 SJA_P1-01380 SJA_C1-12030
 
FDX1
(NRULE_0034)
Putative Rieske-type ferredoxinSJA_C1-05560 SJA_C1-02290 SJA_P1-01460 SJA_C2-04080 SJA_C2-03710 SJA_C1-30530 SJA_C1-28540 SJA_C1-27080 SJA_C1-25240 SJA_C1-25220 SJA_C1-11830
 
FDR2
(NRULE_0057)
Ferredoxin reductaseSJA_C1-25250
Aromatic hydrocarbon degradation (via hydroxylation by dioxygenase)(NFUNC_0016)
必須A
RHDA
(NRULE_0048)
Ring-hydroxylating dioxygenase alpha subunitSJA_C2-03710 SJA_C2-04080 SJA_C1-05560 SJA_C1-25220 SJA_C1-27080
RHDB
(NRULE_0049)
Ring-hydroxylating dioxygenase beta subunitSJA_C1-25230
CDDH
(NRULE_0056)
Cis-dihydrodiol dehydrogenase
任意 
FDR1
(NRULE_0032)
Oxygenase electron transfer componentSJA_C1-12030 SJA_P1-01380 SJA_C1-05160
 
FDX1
(NRULE_0034)
Putative Rieske-type ferredoxinSJA_C1-27080 SJA_P1-01460 SJA_C2-03710 SJA_C1-30530 SJA_C2-04080 SJA_C1-05560 SJA_C1-11830 SJA_C1-25220 SJA_C1-25240 SJA_C1-28540 SJA_C1-02290
 
FDR2
(NRULE_0057)
Ferredoxin reductaseSJA_C1-25250
Arsenical resistance(NFUNC_0004)
必須A
ARSB1
(NRULE_0015)
Arsenical pump membrane protein
ARSC1
(NRULE_0017)
Arsenate reductaseSJA_C1-04250 SJA_C1-16310 SJA_C1-33220
B
ARSB1
(NRULE_0015)
Arsenical pump membrane protein
ARSC2
(NRULE_0018)
Arsenate reductaseSJA_C1-04240
C
ARSB1
(NRULE_0015)
Arsenical pump membrane protein
ARSC3
(NRULE_0019)
Arsenate reductase
D
ARSB2
(NRULE_0016)
Arsenite resistance protein ArsBSJA_C1-04260
ARSC1
(NRULE_0017)
Arsenate reductaseSJA_C1-04250 SJA_C1-33220 SJA_C1-16310
E
ARSB2
(NRULE_0016)
Arsenite resistance protein ArsBSJA_C1-04260
ARSC2
(NRULE_0018)
Arsenate reductaseSJA_C1-04240
F
ARSB2
(NRULE_0016)
Arsenite resistance protein ArsBSJA_C1-04260
ARSC3
(NRULE_0019)
Arsenate reductase
任意 
ARSA
(NRULE_0014)
Arsenical pump-driving ATPase
 
ARSD
(NRULE_0020)
Arsenical resistance operon trans-acting repressor ArsD
 
ARSH
(NRULE_0021)
ArsH proteinSJA_C1-04280
Artificial lacto-N-biose biosynthesis(NFUNC_0026)
必須A
SP
(NRULE_0109)
Sucrose phosphorylase
GALT
(NRULE_0110)
Galactose-1-phosphate uridylyltransferase
GALE
(NRULE_0111)
UDP-glucose 4-epimeraseSJA_C1-20820
LNBP
(NRULE_0112)
1,3-beta-galactosyl-N-acetylhexosamine phosphorylase
Bacitracin resistance(NFUNC_0022)
必須A
UPPP
(NRULE_0097)
Undecaprenyl-diphosphataseSJA_C1-02430
Benzoate degradation (via hydroxylation by dioxygenase)(NFUNC_0017)
必須A
BENA
(NRULE_0046)
Benzoate 1,2-dioxygenase alpha subunit
BENB
(NRULE_0047)
Benzoate 1,2-dioxygenase beta subunit
BEND
(NRULE_0082)
1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase
任意 
BENC
(NRULE_0055)
Benzoate 1,2-dioxygenase electron transfer component
 
FDR1
(NRULE_0032)
Oxygenase electron transfer componentSJA_C1-12030 SJA_C1-05160 SJA_P1-01380
 
FDX1
(NRULE_0034)
Putative Rieske-type ferredoxinSJA_C2-03710 SJA_C1-02290 SJA_C1-05560 SJA_C1-11830 SJA_C1-25220 SJA_C1-25240 SJA_C1-27080 SJA_C1-28540 SJA_C1-30530 SJA_P1-01460 SJA_C2-04080
 
FDR2
(NRULE_0057)
Ferredoxin reductaseSJA_C1-25250
Beta-lactam antibiotic resistance(NFUNC_0033)
必須A
BLAA
(NRULE_0122)
Beta-lactamase class ASJA_C1-21720 SJA_C1-31380
B
BLAB
(NRULE_0123)
Metallo-beta-lactamase
C
BLAC
(NRULE_0124)
Beta-lactamase class C
D
BLAD
(NRULE_0125)
Beta-lactamase class D
Bioplastic degradation(NFUNC_0015)
必須A
PHAZ1
(NRULE_0023)
Intracellular poly(3-hydroxyalkanoate) depolymeraseSJA_C1-23140
B
PHAZ2
(NRULE_0080)
Poly(3-hydroxyalkanoate) depolymerase
C
PHAZ3
(NRULE_0088)
Poly(3-hydroxyalkanoate) depolymerase
任意 
PHAY
(NRULE_0022)
D-(-)-3-hydroxybutyrate oligomer hydrolase
Bioplastic synthesis(NFUNC_0001)
必須A
PHAC1
(NRULE_0010)
Poly(3-hydroxyalkanoate) polymeraseSJA_C1-32560
B
PHAE
(NRULE_0012)
Poly(3-hydroxyalkanoate) polymerase PhaE subunit
PHAC2
(NRULE_0373)
Poly(3-hydroxyalkanoate) polymerase PhaC subunit
C
PHAR
(NRULE_0013)
Poly(3-hydroxyalkanoate) polymerase PhaR subunit
PHAC2
(NRULE_0373)
Poly(3-hydroxyalkanoate) polymerase PhaC subunit
任意 
PHAB
(NRULE_0011)
Acetoacetyl-CoA reductaseSJA_C1-10300
 
PHAP1
(NRULE_0374)
Phasin
 
PHAP2
(NRULE_0375)
Phasin
 
PHAP3
(NRULE_0376)
Phasin
 
PHAF
(NRULE_0377)
Phasin PhaF
 
PHAI
(NRULE_0378)
Phasin PhaI
Biotin biosynthesis(NFUNC_0051)
必須A
BIOF
(NRULE_0182)
8-amino-7-oxononanoate synthase
BIOA
(NRULE_0183)
Adenosylmethionine-8-amino-7-oxononanoate aminotransferaseSJA_C1-02680
BIOD
(NRULE_0184)
ATP-dependent dethiobiotin synthetase BioDSJA_C1-02720
BIOB
(NRULE_0185)
Biotin synthaseSJA_C1-17030
Catechol degradation (beta-ketoadipate pathway)(NFUNC_0013)
必須A
CATA
(NRULE_0052)
Catechol 1,2-dioxygenase
CATB2
(NRULE_0053)
(Chloro)muconate cycloisomeraseSJA_C1-25200 SJA_C1-21130
CATC
(NRULE_0054)
Muconolactone isomeraseSJA_C1-25190
PCAD
(NRULE_0070)
3-oxoadipate enol-lactonaseSJA_C1-25160
PCAI
(NRULE_0072)
3-oxoadipate CoA-transferase subunit A
PCAJ
(NRULE_0073)
3-oxoadipate CoA-transferase subunit B
PCAF
(NRULE_0074)
Beta-ketoadipyl-CoA thiolase
B
CATA
(NRULE_0052)
Catechol 1,2-dioxygenase
CATC
(NRULE_0054)
Muconolactone isomeraseSJA_C1-25190
PCAD
(NRULE_0070)
3-oxoadipate enol-lactonaseSJA_C1-25160
PCAI
(NRULE_0072)
3-oxoadipate CoA-transferase subunit A
PCAJ
(NRULE_0073)
3-oxoadipate CoA-transferase subunit B
PCAF
(NRULE_0074)
Beta-ketoadipyl-CoA thiolase
CATB1
(NRULE_0386)
Muconate cycloisomeraseSJA_C1-25200
C
CATA
(NRULE_0052)
Catechol 1,2-dioxygenase
CATC
(NRULE_0054)
Muconolactone isomeraseSJA_C1-25190
PCAL
(NRULE_0071)
3-oxoadipate enol-lactone hydrolase/4-carboxymuconolactone decarboxylase
PCAI
(NRULE_0072)
3-oxoadipate CoA-transferase subunit A
PCAJ
(NRULE_0073)
3-oxoadipate CoA-transferase subunit B
PCAF
(NRULE_0074)
Beta-ketoadipyl-CoA thiolase
CATB1
(NRULE_0386)
Muconate cycloisomeraseSJA_C1-25200
D
CATA
(NRULE_0052)
Catechol 1,2-dioxygenase
CATB2
(NRULE_0053)
(Chloro)muconate cycloisomeraseSJA_C1-21130 SJA_C1-25200
CATC
(NRULE_0054)
Muconolactone isomeraseSJA_C1-25190
PCAL
(NRULE_0071)
3-oxoadipate enol-lactone hydrolase/4-carboxymuconolactone decarboxylase
PCAI
(NRULE_0072)
3-oxoadipate CoA-transferase subunit A
PCAJ
(NRULE_0073)
3-oxoadipate CoA-transferase subunit B
PCAF
(NRULE_0074)
Beta-ketoadipyl-CoA thiolase
Cephalosporin resistance(NFUNC_0048)
必須A
BLAC
(NRULE_0124)
Beta-lactamase class C
任意 
BLAA
(NRULE_0122)
Beta-lactamase class ASJA_C1-31380 SJA_C1-21720
 
BLAB
(NRULE_0123)
Metallo-beta-lactamase
Chlorocatechol degradation (beta-ketoadipate pathway)(NFUNC_0104)
必須A
PCAI
(NRULE_0072)
3-oxoadipate CoA-transferase subunit A
PCAJ
(NRULE_0073)
3-oxoadipate CoA-transferase subunit B
PCAF
(NRULE_0074)
Beta-ketoadipyl-CoA thiolase
CLCA
(NRULE_0382)
Chlorocatechol 1,2-dioxygenase
CLCD
(NRULE_0383)
Dienelactone hydrolaseSJA_C1-18700 SJA_C2-02240 SJA_C1-33470 SJA_C1-21160 SJA_C1-18860 SJA_C1-16910 SJA_C1-07740 SJA_C1-02750 SJA_C1-00320
CLCE
(NRULE_0384)
Maleylacetate reductaseSJA_C2-04820
CLCB
(NRULE_0387)
Chloromuconate cycloisomeraseSJA_C1-21130
B
CATB2
(NRULE_0053)
(Chloro)muconate cycloisomeraseSJA_C1-25200 SJA_C1-21130
PCAI
(NRULE_0072)
3-oxoadipate CoA-transferase subunit A
PCAJ
(NRULE_0073)
3-oxoadipate CoA-transferase subunit B
PCAF
(NRULE_0074)
Beta-ketoadipyl-CoA thiolase
CLCA
(NRULE_0382)
Chlorocatechol 1,2-dioxygenase
CLCD
(NRULE_0383)
Dienelactone hydrolaseSJA_C1-07740 SJA_C1-16910 SJA_C1-18700 SJA_C1-18860 SJA_C1-21160 SJA_C1-33470 SJA_C2-02240 SJA_C1-00320 SJA_C1-02750
CLCE
(NRULE_0384)
Maleylacetate reductaseSJA_C2-04820
任意 
CLCF
(NRULE_0385)
Chloromuconolactone dehalogenase
Dibenzothiophene degradation (via desulfurization)(NFUNC_0029)
必須A
DSZA
(NRULE_0103)
Dibenzothiophene-5,5-dioxide monooxygenase
DSZB
(NRULE_0104)
2'-hydroxybiphenyl-2-sulfinate desulfinase
DSZC
(NRULE_0105)
Dibenzothiophene monooxygenase
任意 
FADR1
(NRULE_0101)
NADH-dependent flavin reductaseSJA_C1-34960 SJA_C2-03670
1,3-dichloropropene degradation(NFUNC_0012)
必須A
DHAA
(NRULE_0050)
Haloalkane dehalogenaseSJA_C1-19590
CAAD
(NRULE_0076)
3-chloroacrylic acid dehalogenase
MSAD
(NRULE_0079)
Malonate semialdehyde decarboxylase
B
DHAA
(NRULE_0050)
Haloalkane dehalogenaseSJA_C1-19590
CAADA
(NRULE_0077)
3-chloroacrylic acid dehalogenase alpha subunit
CAADB
(NRULE_0078)
3-chloroacrylic acid dehalogenase beta subunit
MSAD
(NRULE_0079)
Malonate semialdehyde decarboxylase
Dihydroxy aromatic compounds degradation (via meta-cleavage pathway)(NFUNC_0011)
必須A
EDIO
(NRULE_0058)
extradiol dioxygenaseSJA_C1-11960 SJA_C1-32520 SJA_C1-02230
METAH
(NRULE_0059)
meta-cleavage compound hydrolase
HPDH
(NRULE_0063)
2-hydroxypent-2,4-dienoate hydratase
HOA
(NRULE_0064)
4-hydroxy-2-oxovalerate aldolaseSJA_C1-11910
ACDH
(NRULE_0065)
Acetaldehyde dehydrogenaseSJA_C1-11900
B
EDIO
(NRULE_0058)
extradiol dioxygenaseSJA_C1-02230 SJA_C1-11960 SJA_C1-32520
2HMSD
(NRULE_0060)
2-hydroxymuconic semialdehyde dehydrogenaseSJA_C1-11860
4OT
(NRULE_0061)
4-oxalocrotonate tautomerase
4OD
(NRULE_0062)
4-oxalocrotonate decarboxylase
HPDH
(NRULE_0063)
2-hydroxypent-2,4-dienoate hydratase
HOA
(NRULE_0064)
4-hydroxy-2-oxovalerate aldolaseSJA_C1-11910
ACDH
(NRULE_0065)
Acetaldehyde dehydrogenaseSJA_C1-11900
Folate biosynthesis(NFUNC_0044)
必須A
GLAT
(NRULE_0142)
Glutamine amidotransferaseSJA_C1-08380
DHPS
(NRULE_0144)
Dihydropteroate synthaseSJA_C1-27270
FOLM
(NRULE_0146)
Dihydrofolate reductase FolM
FOLB
(NRULE_0158)
Dihydroneopterin aldolaseSJA_C2-01180 SJA_C1-14840
FOLK
(NRULE_0159)
2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinaseSJA_C1-21910
FOLC
(NRULE_0160)
Bifunctional protein FolCSJA_C1-21390
PABB
(NRULE_0161)
Para-aminobenzoate synthase component ISJA_C1-08130
PABC
(NRULE_0162)
Aminodeoxychorismate lyase
B
GLAT
(NRULE_0142)
Glutamine amidotransferaseSJA_C1-08380
DHPS
(NRULE_0144)
Dihydropteroate synthaseSJA_C1-27270
FOLA
(NRULE_0147)
Dihydrofolate reductaseSJA_C1-22930
FOLB
(NRULE_0158)
Dihydroneopterin aldolaseSJA_C2-01180 SJA_C1-14840
FOLK
(NRULE_0159)
2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinaseSJA_C1-21910
FOLC
(NRULE_0160)
Bifunctional protein FolCSJA_C1-21390
PABB
(NRULE_0161)
Para-aminobenzoate synthase component ISJA_C1-08130
PABC
(NRULE_0162)
Aminodeoxychorismate lyase
C
GLAT
(NRULE_0142)
Glutamine amidotransferaseSJA_C1-08380
DHPS
(NRULE_0144)
Dihydropteroate synthaseSJA_C1-27270
DFR2
(NRULE_0148)
Dihydrofolate reductase type 2
FOLB
(NRULE_0158)
Dihydroneopterin aldolaseSJA_C1-14840 SJA_C2-01180
FOLK
(NRULE_0159)
2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinaseSJA_C1-21910
FOLC
(NRULE_0160)
Bifunctional protein FolCSJA_C1-21390
PABB
(NRULE_0161)
Para-aminobenzoate synthase component ISJA_C1-08130
PABC
(NRULE_0162)
Aminodeoxychorismate lyase
Haloalkane degradation (conversion into hydroxyacid)(NFUNC_0010)
必須A
DHAA
(NRULE_0050)
Haloalkane dehalogenaseSJA_C1-19590
HAD
(NRULE_0051)
(S)-2-haloacid dehalogenase
B
DHAA
(NRULE_0050)
Haloalkane dehalogenaseSJA_C1-19590
DEH
(NRULE_0075)
Haloacetate dehalogenase
Human milk oligosaccharides metabolism(NFUNC_0083)
必須A
LNBP
(NRULE_0112)
1,3-beta-galactosyl-N-acetylhexosamine phosphorylase
任意 
NAHK
(NRULE_0256)
N-acetylhexosamine 1-kinase
 
GALT
(NRULE_0110)
Galactose-1-phosphate uridylyltransferase
 
GALE
(NRULE_0111)
UDP-glucose 4-epimeraseSJA_C1-20820
4-hydroxyphenylacetate degradation(NFUNC_0068)
必須A
HPAB1
(NRULE_0085)
4-hydroxyphenylacetate 3-monooxygenase oxygenase component
HPAC
(NRULE_0102)
4-hydroxyphenylacetate 3-monooxygenase reductase component
HPAD1
(NRULE_0193)
Homoprotocatechuate 2,3-dioxygenase
HPAE
(NRULE_0195)
5-carboxymethyl-2-hydroxymuconic-semialdehyde dehydrogenase
HPAF
(NRULE_0196)
5-carboxymethyl-2-hydroxymuconate Delta-isomerase
HPAG
(NRULE_0197)
5-oxopent-3-ene-1,2,5-tricarboxylate decarboxylase/2-hydroxyhepta-2,4-diene-1,7-dioate Delta-isomerase
HPAH
(NRULE_0198)
2-oxo-hepta-3-ene-1,7-dioate hydratase
HPAI
(NRULE_0199)
2,4-dihydroxyhept-2-ene-1,7-dioate aldolase
B
HPAB1
(NRULE_0085)
4-hydroxyphenylacetate 3-monooxygenase oxygenase component
HPAC
(NRULE_0102)
4-hydroxyphenylacetate 3-monooxygenase reductase component
HPAD2
(NRULE_0194)
Homoprotocatechuate 2,3-dioxygenase
HPAE
(NRULE_0195)
5-carboxymethyl-2-hydroxymuconic-semialdehyde dehydrogenase
HPAF
(NRULE_0196)
5-carboxymethyl-2-hydroxymuconate Delta-isomerase
HPAG
(NRULE_0197)
5-oxopent-3-ene-1,2,5-tricarboxylate decarboxylase/2-hydroxyhepta-2,4-diene-1,7-dioate Delta-isomerase
HPAH
(NRULE_0198)
2-oxo-hepta-3-ene-1,7-dioate hydratase
HPAI
(NRULE_0199)
2,4-dihydroxyhept-2-ene-1,7-dioate aldolase
C
HPAB1
(NRULE_0085)
4-hydroxyphenylacetate 3-monooxygenase oxygenase component
FADR1
(NRULE_0101)
NADH-dependent flavin reductaseSJA_C2-03670 SJA_C1-34960
HPAD1
(NRULE_0193)
Homoprotocatechuate 2,3-dioxygenase
HPAE
(NRULE_0195)
5-carboxymethyl-2-hydroxymuconic-semialdehyde dehydrogenase
HPAF
(NRULE_0196)
5-carboxymethyl-2-hydroxymuconate Delta-isomerase
HPAG
(NRULE_0197)
5-oxopent-3-ene-1,2,5-tricarboxylate decarboxylase/2-hydroxyhepta-2,4-diene-1,7-dioate Delta-isomerase
HPAH
(NRULE_0198)
2-oxo-hepta-3-ene-1,7-dioate hydratase
HPAI
(NRULE_0199)
2,4-dihydroxyhept-2-ene-1,7-dioate aldolase
D
HPAB1
(NRULE_0085)
4-hydroxyphenylacetate 3-monooxygenase oxygenase component
FADR1
(NRULE_0101)
NADH-dependent flavin reductaseSJA_C2-03670 SJA_C1-34960
HPAD2
(NRULE_0194)
Homoprotocatechuate 2,3-dioxygenase
HPAE
(NRULE_0195)
5-carboxymethyl-2-hydroxymuconic-semialdehyde dehydrogenase
HPAF
(NRULE_0196)
5-carboxymethyl-2-hydroxymuconate Delta-isomerase
HPAG
(NRULE_0197)
5-oxopent-3-ene-1,2,5-tricarboxylate decarboxylase/2-hydroxyhepta-2,4-diene-1,7-dioate Delta-isomerase
HPAH
(NRULE_0198)
2-oxo-hepta-3-ene-1,7-dioate hydratase
HPAI
(NRULE_0199)
2,4-dihydroxyhept-2-ene-1,7-dioate aldolase
E
HPAB2
(NRULE_0086)
4-hydroxyphenylacetate 3-monooxygenase oxygenase component
FADR1
(NRULE_0101)
NADH-dependent flavin reductaseSJA_C1-34960 SJA_C2-03670
HPAD2
(NRULE_0194)
Homoprotocatechuate 2,3-dioxygenase
HPAE
(NRULE_0195)
5-carboxymethyl-2-hydroxymuconic-semialdehyde dehydrogenase
HPAF
(NRULE_0196)
5-carboxymethyl-2-hydroxymuconate Delta-isomerase
HPAG
(NRULE_0197)
5-oxopent-3-ene-1,2,5-tricarboxylate decarboxylase/2-hydroxyhepta-2,4-diene-1,7-dioate Delta-isomerase
HPAH
(NRULE_0198)
2-oxo-hepta-3-ene-1,7-dioate hydratase
HPAI
(NRULE_0199)
2,4-dihydroxyhept-2-ene-1,7-dioate aldolase
F
HPAB2
(NRULE_0086)
4-hydroxyphenylacetate 3-monooxygenase oxygenase component
FADR1
(NRULE_0101)
NADH-dependent flavin reductaseSJA_C1-34960 SJA_C2-03670
HPAD1
(NRULE_0193)
Homoprotocatechuate 2,3-dioxygenase
HPAE
(NRULE_0195)
5-carboxymethyl-2-hydroxymuconic-semialdehyde dehydrogenase
HPAF
(NRULE_0196)
5-carboxymethyl-2-hydroxymuconate Delta-isomerase
HPAG
(NRULE_0197)
5-oxopent-3-ene-1,2,5-tricarboxylate decarboxylase/2-hydroxyhepta-2,4-diene-1,7-dioate Delta-isomerase
HPAH
(NRULE_0198)
2-oxo-hepta-3-ene-1,7-dioate hydratase
HPAI
(NRULE_0199)
2,4-dihydroxyhept-2-ene-1,7-dioate aldolase
G
HPAB2
(NRULE_0086)
4-hydroxyphenylacetate 3-monooxygenase oxygenase component
HPAC
(NRULE_0102)
4-hydroxyphenylacetate 3-monooxygenase reductase component
HPAD2
(NRULE_0194)
Homoprotocatechuate 2,3-dioxygenase
HPAE
(NRULE_0195)
5-carboxymethyl-2-hydroxymuconic-semialdehyde dehydrogenase
HPAF
(NRULE_0196)
5-carboxymethyl-2-hydroxymuconate Delta-isomerase
HPAG
(NRULE_0197)
5-oxopent-3-ene-1,2,5-tricarboxylate decarboxylase/2-hydroxyhepta-2,4-diene-1,7-dioate Delta-isomerase
HPAH
(NRULE_0198)
2-oxo-hepta-3-ene-1,7-dioate hydratase
HPAI
(NRULE_0199)
2,4-dihydroxyhept-2-ene-1,7-dioate aldolase
H
HPAB2
(NRULE_0086)
4-hydroxyphenylacetate 3-monooxygenase oxygenase component
HPAC
(NRULE_0102)
4-hydroxyphenylacetate 3-monooxygenase reductase component
HPAD1
(NRULE_0193)
Homoprotocatechuate 2,3-dioxygenase
HPAE
(NRULE_0195)
5-carboxymethyl-2-hydroxymuconic-semialdehyde dehydrogenase
HPAF
(NRULE_0196)
5-carboxymethyl-2-hydroxymuconate Delta-isomerase
HPAG
(NRULE_0197)
5-oxopent-3-ene-1,2,5-tricarboxylate decarboxylase/2-hydroxyhepta-2,4-diene-1,7-dioate Delta-isomerase
HPAH
(NRULE_0198)
2-oxo-hepta-3-ene-1,7-dioate hydratase
HPAI
(NRULE_0199)
2,4-dihydroxyhept-2-ene-1,7-dioate aldolase
Metal-binding protein(NFUNC_0105)
必須A
MOP
(NRULE_0322)
Putative molybdenum-binding protein
B
MODE
(NRULE_0323)
Putative molybdate-dependent transcriptional regulator
C
MODA
(NRULE_0324)
Molybdate ABC transporter substrate-binding proteinSJA_C1-33060
D
MNTR
(NRULE_0327)
DtxR family transcriptional regulator MntR
E
CUER
(NRULE_0328)
Copper-responsive transcriptional regulator CueRSJA_C1-04820
F
SOXR
(NRULE_0329)
Redox-sensitive transcriptional activator SoxR
G
ZNTR
(NRULE_0330)
Zinc-responsive transcriptional regulator ZntR
H
NIKR
(NRULE_0331)
Nickel-responsive transcriptional regulator NikRSJA_C2-01360
I
ISCR
(NRULE_0332)
Rrf2 family transcriptional regulator IscR
J
SMTA
(NRULE_0009)
Metallothionein
Molybdate transport (ABC transporter)(NFUNC_0097)
必須A
MODA
(NRULE_0324)
Molybdate ABC transporter substrate-binding proteinSJA_C1-33060
任意 
MODE
(NRULE_0323)
Putative molybdate-dependent transcriptional regulator
 
MODB
(NRULE_0325)
Molybdate ABC transporter permease proteinSJA_C1-33080
 
MODC
(NRULE_0326)
Molybdate ABC transporter ATP-binding proteinSJA_C1-33090
Mycosamine biosynthesis(NFUNC_0095)
必須A
AMPHDII
(NRULE_0342)
GDP-3-keto-6-deoxy-D-mannose C-3 aminotransferase
GMD
(NRULE_0343)
GDP-mannose 4,6-dehydrataseSJA_C1-30270
任意 
AMPHDI
(NRULE_0341)
GDP-mycosamine glycosyltransferase
Naphthalene degradation (via hydroxylation by dioxygenase)(NFUNC_0067)
必須A
RHDA
(NRULE_0048)
Ring-hydroxylating dioxygenase alpha subunitSJA_C1-05560 SJA_C2-04080 SJA_C2-03710 SJA_C1-27080 SJA_C1-25220
RHDB
(NRULE_0049)
Ring-hydroxylating dioxygenase beta subunitSJA_C1-25230
CDDH
(NRULE_0056)
Cis-dihydrodiol dehydrogenase
EDIO
(NRULE_0058)
extradiol dioxygenaseSJA_C1-11960 SJA_C1-02230 SJA_C1-32520
NAHD
(NRULE_0171)
2-hydroxychromene-2-carboxylate isomerase
NAHE
(NRULE_0172)
Trans-O-hydroxybenzylidenepyruvate hydratase-aldolase
NAHF
(NRULE_0173)
Salicylaldehyde dehydrogenase
NAHG
(NRULE_0190)
Salicylate hydroxylase
B
RHDA
(NRULE_0048)
Ring-hydroxylating dioxygenase alpha subunitSJA_C2-04080 SJA_C2-03710 SJA_C1-27080 SJA_C1-25220 SJA_C1-05560
RHDB
(NRULE_0049)
Ring-hydroxylating dioxygenase beta subunitSJA_C1-25230
CDDH
(NRULE_0056)
Cis-dihydrodiol dehydrogenase
EDIO
(NRULE_0058)
extradiol dioxygenaseSJA_C1-32520 SJA_C1-02230 SJA_C1-11960
NAHD
(NRULE_0171)
2-hydroxychromene-2-carboxylate isomerase
NAHE
(NRULE_0172)
Trans-O-hydroxybenzylidenepyruvate hydratase-aldolase
NAHF
(NRULE_0173)
Salicylaldehyde dehydrogenase
NAGG
(NRULE_0191)
Salicylate 5-hydroxylase alpha subunit
NAGH
(NRULE_0192)
Salicylate 5-hydroxylase beta subunit
任意 
FDR1
(NRULE_0032)
Oxygenase electron transfer componentSJA_C1-05160 SJA_C1-12030 SJA_P1-01380
 
FDX1
(NRULE_0034)
Putative Rieske-type ferredoxinSJA_C1-02290 SJA_P1-01460 SJA_C2-04080 SJA_C2-03710 SJA_C1-30530 SJA_C1-28540 SJA_C1-27080 SJA_C1-25240 SJA_C1-25220 SJA_C1-11830 SJA_C1-05560
 
FDR2
(NRULE_0057)
Ferredoxin reductaseSJA_C1-25250
Nitrile hydratase(NFUNC_0002)
必須A
NHAA
(NRULE_0001)
Nitrile hydratase subunit alpha
NHAB
(NRULE_0002)
Nitrile hydratase subunit beta
任意 
P14K
(NRULE_0006)
Nitrile hydratase activator P14K
 
COBW
(NRULE_0007)
CobW/P47K family proteinSJA_C2-03060 SJA_C1-19020
(R)-pantothenate biosynthesis(NFUNC_0030)
必須A
PAND
(NRULE_0115)
Aspartate 1-decarboxylase
PANB
(NRULE_0116)
3-methyl-2-oxobutanoate hydroxymethyltransferaseSJA_C1-24960
PANE
(NRULE_0117)
2-dehydropantoate 2-reductaseSJA_C2-03560
PANC
(NRULE_0118)
Pantothenate synthetaseSJA_C1-35270
Penicillin resistance(NFUNC_0047)
必須A
BLAA
(NRULE_0122)
Beta-lactamase class ASJA_C1-31380 SJA_C1-21720
B
BLAD
(NRULE_0125)
Beta-lactamase class D
任意 
BLAB
(NRULE_0123)
Metallo-beta-lactamase
Phenol degradation(NFUNC_0028)
必須A
MMA
(NRULE_0027)
Multicomponent monooxygenase alpha subunitSJA_C1-11990 SJA_C1-12010
MMB
(NRULE_0028)
Multicomponent monooxygenase beta subunitSJA_C1-12010 SJA_C1-11990
MMG1
(NRULE_0029)
Multicomponent monooxygenase gamma subunitSJA_C1-12020
B
PHEA1
(NRULE_0083)
Aromatic ring hydroxylaseSJA_C2-03820
C
PHEA2
(NRULE_0084)
Aromatic ring hydroxylaseSJA_C1-21170
任意 
FDR2
(NRULE_0057)
Ferredoxin reductaseSJA_C1-25250
 
FDR1
(NRULE_0032)
Oxygenase electron transfer componentSJA_C1-05160 SJA_C1-12030 SJA_P1-01380
 
MME
(NRULE_0033)
Multicomponent monooxygenase effector proteinSJA_C1-12000
 
FDX1
(NRULE_0034)
Putative Rieske-type ferredoxinSJA_C1-25220 SJA_C1-25240 SJA_C1-27080 SJA_C1-28540 SJA_C1-30530 SJA_C2-03710 SJA_C1-02290 SJA_C1-11830 SJA_C1-05560 SJA_C2-04080 SJA_P1-01460
 
FADR1
(NRULE_0101)
NADH-dependent flavin reductaseSJA_C1-34960 SJA_C2-03670
Protocatechuate degradation (beta-ketoadipate pathway)(NFUNC_0014)
必須A
PCAG
(NRULE_0066)
Protocatechuate 3,4-dioxygenase alpha subunit
PCAH
(NRULE_0067)
Protocatechuate 3,4-dioxygenase beta subunit
PCAB
(NRULE_0068)
3-carboxy-cis,cis-muconate cycloisomerase
PCAC
(NRULE_0069)
4-carboxymuconolactone decarboxylase
PCAD
(NRULE_0070)
3-oxoadipate enol-lactonaseSJA_C1-25160
PCAI
(NRULE_0072)
3-oxoadipate CoA-transferase subunit A
PCAJ
(NRULE_0073)
3-oxoadipate CoA-transferase subunit B
PCAF
(NRULE_0074)
Beta-ketoadipyl-CoA thiolase
B
PCAG
(NRULE_0066)
Protocatechuate 3,4-dioxygenase alpha subunit
PCAH
(NRULE_0067)
Protocatechuate 3,4-dioxygenase beta subunit
PCAB
(NRULE_0068)
3-carboxy-cis,cis-muconate cycloisomerase
PCAL
(NRULE_0071)
3-oxoadipate enol-lactone hydrolase/4-carboxymuconolactone decarboxylase
PCAI
(NRULE_0072)
3-oxoadipate CoA-transferase subunit A
PCAJ
(NRULE_0073)
3-oxoadipate CoA-transferase subunit B
PCAF
(NRULE_0074)
Beta-ketoadipyl-CoA thiolase
Riboflavin biosynthesis(NFUNC_0058)
必須A
RIBB
(NRULE_0200)
3,4-dihydroxy-2-butanone 4-phosphate synthaseSJA_C2-03830 SJA_C1-02930
RIBA
(NRULE_0201)
GTP cyclohydrolase-2SJA_C1-35060 SJA_C2-03830 SJA_C1-02930
RIBD
(NRULE_0202)
Riboflavin biosynthesis protein RibD
RIBH
(NRULE_0203)
6,7-dimethyl-8-ribityllumazine synthaseSJA_C1-02940
RIBE
(NRULE_0204)
Riboflavin synthaseSJA_C1-02920
任意 
RIBF
(NRULE_0205)
Riboflavin biosynthesis protein RibFSJA_C1-22920
Streptomycin resistance(NFUNC_0054)
必須A
ANT6
(NRULE_0151)
Aminoglycoside 6-adenylyltransferase
B
ANT3
(NRULE_0154)
Streptomycin 3''-adenylyltransferase
C
APH6
(NRULE_0155)
Streptomycin 6-kinaseSJA_C1-33100
任意 
APH3
(NRULE_0156)
Aminoglycoside 3'-phosphotransferase
Toluene degradation (conversion into protocatechuate via p-cresol)(NFUNC_0007)
必須A
MMA
(NRULE_0027)
Multicomponent monooxygenase alpha subunitSJA_C1-12010 SJA_C1-11990
MMB
(NRULE_0028)
Multicomponent monooxygenase beta subunitSJA_C1-12010 SJA_C1-11990
FDR1
(NRULE_0032)
Oxygenase electron transfer componentSJA_P1-01380 SJA_C1-05160 SJA_C1-12030
MME
(NRULE_0033)
Multicomponent monooxygenase effector proteinSJA_C1-12000
PCHF
(NRULE_0035)
4-cresol dehydrogenase flavoprotein subunit
PCHC
(NRULE_0036)
4-cresol dehydrogenase cytochrome c subunit
PCHA
(NRULE_0037)
p-hydroxybenzaldehyde dehydrogenase
POBA
(NRULE_0038)
p-hydroxybenzoate hydroxylase
任意 
MMG1
(NRULE_0029)
Multicomponent monooxygenase gamma subunitSJA_C1-12020
 
MMG2
(NRULE_0030)
Multicomponent monooxygenase gamma subunit
 
MMG3
(NRULE_0031)
Multicomponent monooxygenase gamma subunit
 
FDX1
(NRULE_0034)
Putative Rieske-type ferredoxinSJA_C1-02290 SJA_C1-11830 SJA_C1-25220 SJA_C1-25240 SJA_C1-27080 SJA_C1-28540 SJA_C1-30530 SJA_C2-03710 SJA_C2-04080 SJA_P1-01460 SJA_C1-05560
Trehalose biosynthesis (from maltooligosaccharide)(NFUNC_0037)
必須A
TREY
(NRULE_0140)
Maltooligosyl trehalose synthase
TREZ
(NRULE_0141)
Malto-oligosyltrehalose trehalohydrolase
任意 
GLGX
(NRULE_0139)
Glycogen debranching enzymeSJA_C1-21930
Trehalose biosynthesis (from NDP-glucose and glucose-6-phosphate)(NFUNC_0031)
必須A
TPS
(NRULE_0119)
Trehalose-phosphate synthaseSJA_C1-14720
TPP
(NRULE_0120)
Trehalose-6-phosphate phosphataseSJA_C1-14740
Vitamin B6 biosynthesis (PdxA/PdxJ pathway)(NFUNC_0060)
必須A
EPD
(NRULE_0208)
D-erythrose-4-phosphate dehydrogenase
PDXB
(NRULE_0209)
Erythronate-4-phosphate dehydrogenase
SERC
(NRULE_0210)
Phosphoserine aminotransferase
PDXA
(NRULE_0211)
4-hydroxythreonine-4-phosphate dehydrogenaseSJA_C1-25550
PDXJ
(NRULE_0212)
Pyridoxine 5'-phosphate synthaseSJA_C1-06670