English site

Functional Potential : Intrasporangium calvum

Download
TypePattern Component Gene CDS
Alanine racemization(NFUNC_0063)
RequireA
ALR
(NRULE_0228)
Alanine racemaseIntca_1004
n-alkane hydroxylation(NFUNC_0008)
RequireA
CYP153
(NRULE_0041)
Cytochrome P450 CYP153
B
ALKB
(NRULE_0024)
Alkane 1-monooxygenase
C
MMA
(NRULE_0027)
Multicomponent monooxygenase alpha subunit
MMB
(NRULE_0028)
Multicomponent monooxygenase beta subunit
FDR1
(NRULE_0032)
Oxygenase electron transfer componentIntca_2187
MME
(NRULE_0033)
Multicomponent monooxygenase effector protein
Participant 
RUBA
(NRULE_0039)
Rubredoxin
 
RUBB
(NRULE_0040)
Rubredoxin reductase
 
MMG1
(NRULE_0029)
Multicomponent monooxygenase gamma subunit
 
MMG2
(NRULE_0030)
Multicomponent monooxygenase gamma subunit
 
MMG3
(NRULE_0031)
Multicomponent monooxygenase gamma subunit
 
FDX1
(NRULE_0034)
Putative Rieske-type ferredoxinIntca_2070 Intca_0449 Intca_1679 Intca_1984
Aminoglycoside resistance (by aminoglycoside O-phosphotransferase)(NFUNC_0043)
RequireA
APH6
(NRULE_0155)
Streptomycin 6-kinaseIntca_2230
B
APH3
(NRULE_0156)
Aminoglycoside 3'-phosphotransferase
C
APH7
(NRULE_0157)
Hygromycin-B 7''-O-kinase
D
HPH
(NRULE_0174)
Hygromycin-B 4-O-kinase
Aniline degradation (conversion into catechol)(NFUNC_0075)
RequireA
ATDA1
(NRULE_0240)
Gamma-glutamylanilide synthetase
ATDA3
(NRULE_0357)
Aniline dioxygenase large subunit
ATDA4
(NRULE_0358)
Aniline dioxygenase small subunit
Participant 
ATDA2
(NRULE_0241)
Putative gamma-glutamylanilide hydrolase
 
FDR1
(NRULE_0032)
Oxygenase electron transfer componentIntca_2187
 
FDX1
(NRULE_0034)
Putative Rieske-type ferredoxinIntca_1984 Intca_2070 Intca_0449 Intca_1679
 
FDR2
(NRULE_0057)
Ferredoxin reductaseIntca_1108
Anthranilate biosynthesis(NFUNC_0038)
RequireA
GLAT
(NRULE_0142)
Glutamine amidotransferaseIntca_0061
TRPE
(NRULE_0143)
Anthranilate synthase component IIntca_1637
Anthranilate degradation (via hydroxylation)(NFUNC_0018)
RequireA
ANTA
(NRULE_0044)
Anthranilate 1,2-dioxygenase large subunit
ANTB
(NRULE_0045)
Anthranilate 1,2-dioxygenase small subunit
Participant 
ANTC
(NRULE_0081)
Anthranilate 1,2-dioxygenase electron transfer component
 
FDR1
(NRULE_0032)
Oxygenase electron transfer componentIntca_2187
 
FDX1
(NRULE_0034)
Putative Rieske-type ferredoxinIntca_2070 Intca_0449 Intca_1679 Intca_1984
 
FDR2
(NRULE_0057)
Ferredoxin reductaseIntca_1108
Aromatic hydrocarbon degradation (via hydroxylation by dioxygenase)(NFUNC_0016)
RequireA
RHDA
(NRULE_0048)
Ring-hydroxylating dioxygenase alpha subunit
RHDB
(NRULE_0049)
Ring-hydroxylating dioxygenase beta subunit
CDDH
(NRULE_0056)
Cis-dihydrodiol dehydrogenase
Participant 
FDR1
(NRULE_0032)
Oxygenase electron transfer componentIntca_2187
 
FDX1
(NRULE_0034)
Putative Rieske-type ferredoxinIntca_0449 Intca_2070 Intca_1984 Intca_1679
 
FDR2
(NRULE_0057)
Ferredoxin reductaseIntca_1108
Arsenical resistance(NFUNC_0004)
RequireA
ARSB1
(NRULE_0015)
Arsenical pump membrane protein
ARSC1
(NRULE_0017)
Arsenate reductase
B
ARSB1
(NRULE_0015)
Arsenical pump membrane protein
ARSC2
(NRULE_0018)
Arsenate reductase
C
ARSB1
(NRULE_0015)
Arsenical pump membrane protein
ARSC3
(NRULE_0019)
Arsenate reductase
D
ARSB2
(NRULE_0016)
Arsenite resistance protein ArsBIntca_2081
ARSC1
(NRULE_0017)
Arsenate reductase
E
ARSB2
(NRULE_0016)
Arsenite resistance protein ArsBIntca_2081
ARSC2
(NRULE_0018)
Arsenate reductase
F
ARSB2
(NRULE_0016)
Arsenite resistance protein ArsBIntca_2081
ARSC3
(NRULE_0019)
Arsenate reductase
Participant 
ARSA
(NRULE_0014)
Arsenical pump-driving ATPaseIntca_2083
 
ARSD
(NRULE_0020)
Arsenical resistance operon trans-acting repressor ArsDIntca_2082
 
ARSH
(NRULE_0021)
ArsH protein
Artificial lacto-N-biose biosynthesis(NFUNC_0026)
RequireA
SP
(NRULE_0109)
Sucrose phosphorylase
GALT
(NRULE_0110)
Galactose-1-phosphate uridylyltransferaseIntca_2810
GALE
(NRULE_0111)
UDP-glucose 4-epimeraseIntca_0215
LNBP
(NRULE_0112)
1,3-beta-galactosyl-N-acetylhexosamine phosphorylase
Bacitracin resistance(NFUNC_0022)
RequireA
UPPP
(NRULE_0097)
Undecaprenyl-diphosphataseIntca_1748
Benzoate degradation (via hydroxylation by dioxygenase)(NFUNC_0017)
RequireA
BENA
(NRULE_0046)
Benzoate 1,2-dioxygenase alpha subunit
BENB
(NRULE_0047)
Benzoate 1,2-dioxygenase beta subunit
BEND
(NRULE_0082)
1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase
Participant 
BENC
(NRULE_0055)
Benzoate 1,2-dioxygenase electron transfer component
 
FDR1
(NRULE_0032)
Oxygenase electron transfer componentIntca_2187
 
FDX1
(NRULE_0034)
Putative Rieske-type ferredoxinIntca_2070 Intca_0449 Intca_1679 Intca_1984
 
FDR2
(NRULE_0057)
Ferredoxin reductaseIntca_1108
Biotin biosynthesis(NFUNC_0051)
RequireA
BIOF
(NRULE_0182)
8-amino-7-oxononanoate synthase
BIOA
(NRULE_0183)
Adenosylmethionine-8-amino-7-oxononanoate aminotransferaseIntca_2345
BIOD
(NRULE_0184)
ATP-dependent dethiobiotin synthetase BioDIntca_2346
BIOB
(NRULE_0185)
Biotin synthaseIntca_2344
Catechol degradation (beta-ketoadipate pathway)(NFUNC_0013)
RequireA
CATA
(NRULE_0052)
Catechol 1,2-dioxygenase
CATB2
(NRULE_0053)
(Chloro)muconate cycloisomerase
CATC
(NRULE_0054)
Muconolactone isomerase
PCAD
(NRULE_0070)
3-oxoadipate enol-lactonase
PCAI
(NRULE_0072)
3-oxoadipate CoA-transferase subunit AIntca_0851
PCAJ
(NRULE_0073)
3-oxoadipate CoA-transferase subunit BIntca_0852
PCAF
(NRULE_0074)
Beta-ketoadipyl-CoA thiolaseIntca_0377
B
CATA
(NRULE_0052)
Catechol 1,2-dioxygenase
CATC
(NRULE_0054)
Muconolactone isomerase
PCAD
(NRULE_0070)
3-oxoadipate enol-lactonase
PCAI
(NRULE_0072)
3-oxoadipate CoA-transferase subunit AIntca_0851
PCAJ
(NRULE_0073)
3-oxoadipate CoA-transferase subunit BIntca_0852
PCAF
(NRULE_0074)
Beta-ketoadipyl-CoA thiolaseIntca_0377
CATB1
(NRULE_0386)
Muconate cycloisomerase
C
CATA
(NRULE_0052)
Catechol 1,2-dioxygenase
CATC
(NRULE_0054)
Muconolactone isomerase
PCAL
(NRULE_0071)
3-oxoadipate enol-lactone hydrolase/4-carboxymuconolactone decarboxylase
PCAI
(NRULE_0072)
3-oxoadipate CoA-transferase subunit AIntca_0851
PCAJ
(NRULE_0073)
3-oxoadipate CoA-transferase subunit BIntca_0852
PCAF
(NRULE_0074)
Beta-ketoadipyl-CoA thiolaseIntca_0377
CATB1
(NRULE_0386)
Muconate cycloisomerase
D
CATA
(NRULE_0052)
Catechol 1,2-dioxygenase
CATB2
(NRULE_0053)
(Chloro)muconate cycloisomerase
CATC
(NRULE_0054)
Muconolactone isomerase
PCAL
(NRULE_0071)
3-oxoadipate enol-lactone hydrolase/4-carboxymuconolactone decarboxylase
PCAI
(NRULE_0072)
3-oxoadipate CoA-transferase subunit AIntca_0851
PCAJ
(NRULE_0073)
3-oxoadipate CoA-transferase subunit BIntca_0852
PCAF
(NRULE_0074)
Beta-ketoadipyl-CoA thiolaseIntca_0377
Chlorocatechol degradation (beta-ketoadipate pathway)(NFUNC_0104)
RequireA
PCAI
(NRULE_0072)
3-oxoadipate CoA-transferase subunit AIntca_0851
PCAJ
(NRULE_0073)
3-oxoadipate CoA-transferase subunit BIntca_0852
PCAF
(NRULE_0074)
Beta-ketoadipyl-CoA thiolaseIntca_0377
CLCA
(NRULE_0382)
Chlorocatechol 1,2-dioxygenase
CLCD
(NRULE_0383)
Dienelactone hydrolaseIntca_3481 Intca_0569 Intca_0904 Intca_3568 Intca_3413
CLCE
(NRULE_0384)
Maleylacetate reductase
CLCB
(NRULE_0387)
Chloromuconate cycloisomerase
B
CATB2
(NRULE_0053)
(Chloro)muconate cycloisomerase
PCAI
(NRULE_0072)
3-oxoadipate CoA-transferase subunit AIntca_0851
PCAJ
(NRULE_0073)
3-oxoadipate CoA-transferase subunit BIntca_0852
PCAF
(NRULE_0074)
Beta-ketoadipyl-CoA thiolaseIntca_0377
CLCA
(NRULE_0382)
Chlorocatechol 1,2-dioxygenase
CLCD
(NRULE_0383)
Dienelactone hydrolaseIntca_3568 Intca_3481 Intca_3413 Intca_0904 Intca_0569
CLCE
(NRULE_0384)
Maleylacetate reductase
Participant 
CLCF
(NRULE_0385)
Chloromuconolactone dehalogenase
Dibenzothiophene degradation (via desulfurization)(NFUNC_0029)
RequireA
DSZA
(NRULE_0103)
Dibenzothiophene-5,5-dioxide monooxygenase
DSZB
(NRULE_0104)
2'-hydroxybiphenyl-2-sulfinate desulfinase
DSZC
(NRULE_0105)
Dibenzothiophene monooxygenase
Participant 
FADR1
(NRULE_0101)
NADH-dependent flavin reductaseIntca_3157 Intca_1892 Intca_1628
Dihydroxy aromatic compounds degradation (via meta-cleavage pathway)(NFUNC_0011)
RequireA
EDIO
(NRULE_0058)
extradiol dioxygenaseIntca_0552 Intca_1103
METAH
(NRULE_0059)
meta-cleavage compound hydrolase
HPDH
(NRULE_0063)
2-hydroxypent-2,4-dienoate hydratase
HOA
(NRULE_0064)
4-hydroxy-2-oxovalerate aldolaseIntca_1094
ACDH
(NRULE_0065)
Acetaldehyde dehydrogenaseIntca_1095
B
EDIO
(NRULE_0058)
extradiol dioxygenaseIntca_1103 Intca_0552
2HMSD
(NRULE_0060)
2-hydroxymuconic semialdehyde dehydrogenase
4OT
(NRULE_0061)
4-oxalocrotonate tautomerase
4OD
(NRULE_0062)
4-oxalocrotonate decarboxylase
HPDH
(NRULE_0063)
2-hydroxypent-2,4-dienoate hydratase
HOA
(NRULE_0064)
4-hydroxy-2-oxovalerate aldolaseIntca_1094
ACDH
(NRULE_0065)
Acetaldehyde dehydrogenaseIntca_1095
Extracellular electron transfer system(NFUNC_0098)
RequireA
NAPC
(NRULE_0333)
Multiheme c-type cytochromeIntca_1869 Intca_1871
MTRC
(NRULE_0334)
OmcA/MtrC family decaheme c-type cytochrome
MTRA
(NRULE_0335)
MtrA/DmsE family decaheme c-type cytochrome
MTRB
(NRULE_0336)
Outer membrane protein MtrB homolog
Folate biosynthesis(NFUNC_0044)
RequireA
GLAT
(NRULE_0142)
Glutamine amidotransferaseIntca_0061
DHPS
(NRULE_0144)
Dihydropteroate synthaseIntca_0602 Intca_0305
FOLM
(NRULE_0146)
Dihydrofolate reductase FolM
FOLB
(NRULE_0158)
Dihydroneopterin aldolaseIntca_0603
FOLK
(NRULE_0159)
2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinaseIntca_0603
FOLC
(NRULE_0160)
Bifunctional protein FolCIntca_2212
PABB
(NRULE_0161)
Para-aminobenzoate synthase component I
PABC
(NRULE_0162)
Aminodeoxychorismate lyase
B
GLAT
(NRULE_0142)
Glutamine amidotransferaseIntca_0061
DHPS
(NRULE_0144)
Dihydropteroate synthaseIntca_0305 Intca_0602
FOLA
(NRULE_0147)
Dihydrofolate reductaseIntca_2184
FOLB
(NRULE_0158)
Dihydroneopterin aldolaseIntca_0603
FOLK
(NRULE_0159)
2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinaseIntca_0603
FOLC
(NRULE_0160)
Bifunctional protein FolCIntca_2212
PABB
(NRULE_0161)
Para-aminobenzoate synthase component I
PABC
(NRULE_0162)
Aminodeoxychorismate lyase
C
GLAT
(NRULE_0142)
Glutamine amidotransferaseIntca_0061
DHPS
(NRULE_0144)
Dihydropteroate synthaseIntca_0602 Intca_0305
DFR2
(NRULE_0148)
Dihydrofolate reductase type 2
FOLB
(NRULE_0158)
Dihydroneopterin aldolaseIntca_0603
FOLK
(NRULE_0159)
2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinaseIntca_0603
FOLC
(NRULE_0160)
Bifunctional protein FolCIntca_2212
PABB
(NRULE_0161)
Para-aminobenzoate synthase component I
PABC
(NRULE_0162)
Aminodeoxychorismate lyase
Haloalkane degradation (conversion into hydroxyacid)(NFUNC_0010)
RequireA
DHAA
(NRULE_0050)
Haloalkane dehalogenase
HAD
(NRULE_0051)
(S)-2-haloacid dehalogenaseIntca_3029
B
DHAA
(NRULE_0050)
Haloalkane dehalogenase
DEH
(NRULE_0075)
Haloacetate dehalogenase
Human milk oligosaccharides metabolism(NFUNC_0083)
RequireA
LNBP
(NRULE_0112)
1,3-beta-galactosyl-N-acetylhexosamine phosphorylase
Participant 
NAHK
(NRULE_0256)
N-acetylhexosamine 1-kinase
 
GALT
(NRULE_0110)
Galactose-1-phosphate uridylyltransferaseIntca_2810
 
GALE
(NRULE_0111)
UDP-glucose 4-epimeraseIntca_0215
4-hydroxyphenylacetate degradation(NFUNC_0068)
RequireA
HPAB1
(NRULE_0085)
4-hydroxyphenylacetate 3-monooxygenase oxygenase component
HPAC
(NRULE_0102)
4-hydroxyphenylacetate 3-monooxygenase reductase component
HPAD1
(NRULE_0193)
Homoprotocatechuate 2,3-dioxygenase
HPAE
(NRULE_0195)
5-carboxymethyl-2-hydroxymuconic-semialdehyde dehydrogenase
HPAF
(NRULE_0196)
5-carboxymethyl-2-hydroxymuconate Delta-isomerase
HPAG
(NRULE_0197)
5-oxopent-3-ene-1,2,5-tricarboxylate decarboxylase/2-hydroxyhepta-2,4-diene-1,7-dioate Delta-isomerase
HPAH
(NRULE_0198)
2-oxo-hepta-3-ene-1,7-dioate hydratase
HPAI
(NRULE_0199)
2,4-dihydroxyhept-2-ene-1,7-dioate aldolase
B
HPAB1
(NRULE_0085)
4-hydroxyphenylacetate 3-monooxygenase oxygenase component
HPAC
(NRULE_0102)
4-hydroxyphenylacetate 3-monooxygenase reductase component
HPAD2
(NRULE_0194)
Homoprotocatechuate 2,3-dioxygenase
HPAE
(NRULE_0195)
5-carboxymethyl-2-hydroxymuconic-semialdehyde dehydrogenase
HPAF
(NRULE_0196)
5-carboxymethyl-2-hydroxymuconate Delta-isomerase
HPAG
(NRULE_0197)
5-oxopent-3-ene-1,2,5-tricarboxylate decarboxylase/2-hydroxyhepta-2,4-diene-1,7-dioate Delta-isomerase
HPAH
(NRULE_0198)
2-oxo-hepta-3-ene-1,7-dioate hydratase
HPAI
(NRULE_0199)
2,4-dihydroxyhept-2-ene-1,7-dioate aldolase
C
HPAB1
(NRULE_0085)
4-hydroxyphenylacetate 3-monooxygenase oxygenase component
FADR1
(NRULE_0101)
NADH-dependent flavin reductaseIntca_1628 Intca_1892 Intca_3157
HPAD1
(NRULE_0193)
Homoprotocatechuate 2,3-dioxygenase
HPAE
(NRULE_0195)
5-carboxymethyl-2-hydroxymuconic-semialdehyde dehydrogenase
HPAF
(NRULE_0196)
5-carboxymethyl-2-hydroxymuconate Delta-isomerase
HPAG
(NRULE_0197)
5-oxopent-3-ene-1,2,5-tricarboxylate decarboxylase/2-hydroxyhepta-2,4-diene-1,7-dioate Delta-isomerase
HPAH
(NRULE_0198)
2-oxo-hepta-3-ene-1,7-dioate hydratase
HPAI
(NRULE_0199)
2,4-dihydroxyhept-2-ene-1,7-dioate aldolase
D
HPAB1
(NRULE_0085)
4-hydroxyphenylacetate 3-monooxygenase oxygenase component
FADR1
(NRULE_0101)
NADH-dependent flavin reductaseIntca_1892 Intca_1628 Intca_3157
HPAD2
(NRULE_0194)
Homoprotocatechuate 2,3-dioxygenase
HPAE
(NRULE_0195)
5-carboxymethyl-2-hydroxymuconic-semialdehyde dehydrogenase
HPAF
(NRULE_0196)
5-carboxymethyl-2-hydroxymuconate Delta-isomerase
HPAG
(NRULE_0197)
5-oxopent-3-ene-1,2,5-tricarboxylate decarboxylase/2-hydroxyhepta-2,4-diene-1,7-dioate Delta-isomerase
HPAH
(NRULE_0198)
2-oxo-hepta-3-ene-1,7-dioate hydratase
HPAI
(NRULE_0199)
2,4-dihydroxyhept-2-ene-1,7-dioate aldolase
E
HPAB2
(NRULE_0086)
4-hydroxyphenylacetate 3-monooxygenase oxygenase component
FADR1
(NRULE_0101)
NADH-dependent flavin reductaseIntca_1628 Intca_1892 Intca_3157
HPAD2
(NRULE_0194)
Homoprotocatechuate 2,3-dioxygenase
HPAE
(NRULE_0195)
5-carboxymethyl-2-hydroxymuconic-semialdehyde dehydrogenase
HPAF
(NRULE_0196)
5-carboxymethyl-2-hydroxymuconate Delta-isomerase
HPAG
(NRULE_0197)
5-oxopent-3-ene-1,2,5-tricarboxylate decarboxylase/2-hydroxyhepta-2,4-diene-1,7-dioate Delta-isomerase
HPAH
(NRULE_0198)
2-oxo-hepta-3-ene-1,7-dioate hydratase
HPAI
(NRULE_0199)
2,4-dihydroxyhept-2-ene-1,7-dioate aldolase
F
HPAB2
(NRULE_0086)
4-hydroxyphenylacetate 3-monooxygenase oxygenase component
FADR1
(NRULE_0101)
NADH-dependent flavin reductaseIntca_1628 Intca_1892 Intca_3157
HPAD1
(NRULE_0193)
Homoprotocatechuate 2,3-dioxygenase
HPAE
(NRULE_0195)
5-carboxymethyl-2-hydroxymuconic-semialdehyde dehydrogenase
HPAF
(NRULE_0196)
5-carboxymethyl-2-hydroxymuconate Delta-isomerase
HPAG
(NRULE_0197)
5-oxopent-3-ene-1,2,5-tricarboxylate decarboxylase/2-hydroxyhepta-2,4-diene-1,7-dioate Delta-isomerase
HPAH
(NRULE_0198)
2-oxo-hepta-3-ene-1,7-dioate hydratase
HPAI
(NRULE_0199)
2,4-dihydroxyhept-2-ene-1,7-dioate aldolase
G
HPAB2
(NRULE_0086)
4-hydroxyphenylacetate 3-monooxygenase oxygenase component
HPAC
(NRULE_0102)
4-hydroxyphenylacetate 3-monooxygenase reductase component
HPAD2
(NRULE_0194)
Homoprotocatechuate 2,3-dioxygenase
HPAE
(NRULE_0195)
5-carboxymethyl-2-hydroxymuconic-semialdehyde dehydrogenase
HPAF
(NRULE_0196)
5-carboxymethyl-2-hydroxymuconate Delta-isomerase
HPAG
(NRULE_0197)
5-oxopent-3-ene-1,2,5-tricarboxylate decarboxylase/2-hydroxyhepta-2,4-diene-1,7-dioate Delta-isomerase
HPAH
(NRULE_0198)
2-oxo-hepta-3-ene-1,7-dioate hydratase
HPAI
(NRULE_0199)
2,4-dihydroxyhept-2-ene-1,7-dioate aldolase
H
HPAB2
(NRULE_0086)
4-hydroxyphenylacetate 3-monooxygenase oxygenase component
HPAC
(NRULE_0102)
4-hydroxyphenylacetate 3-monooxygenase reductase component
HPAD1
(NRULE_0193)
Homoprotocatechuate 2,3-dioxygenase
HPAE
(NRULE_0195)
5-carboxymethyl-2-hydroxymuconic-semialdehyde dehydrogenase
HPAF
(NRULE_0196)
5-carboxymethyl-2-hydroxymuconate Delta-isomerase
HPAG
(NRULE_0197)
5-oxopent-3-ene-1,2,5-tricarboxylate decarboxylase/2-hydroxyhepta-2,4-diene-1,7-dioate Delta-isomerase
HPAH
(NRULE_0198)
2-oxo-hepta-3-ene-1,7-dioate hydratase
HPAI
(NRULE_0199)
2,4-dihydroxyhept-2-ene-1,7-dioate aldolase
Metal-binding protein(NFUNC_0105)
RequireA
MOP
(NRULE_0322)
Putative molybdenum-binding proteinIntca_0526 Intca_2916 Intca_2876 Intca_2873
B
MODE
(NRULE_0323)
Putative molybdate-dependent transcriptional regulator
C
MODA
(NRULE_0324)
Molybdate ABC transporter substrate-binding proteinIntca_0529 Intca_0417 Intca_2874 Intca_2155
D
MNTR
(NRULE_0327)
DtxR family transcriptional regulator MntR
E
CUER
(NRULE_0328)
Copper-responsive transcriptional regulator CueR
F
SOXR
(NRULE_0329)
Redox-sensitive transcriptional activator SoxRIntca_0540
G
ZNTR
(NRULE_0330)
Zinc-responsive transcriptional regulator ZntR
H
NIKR
(NRULE_0331)
Nickel-responsive transcriptional regulator NikR
I
ISCR
(NRULE_0332)
Rrf2 family transcriptional regulator IscR
J
SMTA
(NRULE_0009)
Metallothionein
Molybdate transport (ABC transporter)(NFUNC_0097)
RequireA
MODA
(NRULE_0324)
Molybdate ABC transporter substrate-binding proteinIntca_0529 Intca_0417 Intca_2874 Intca_2155
Participant 
MODE
(NRULE_0323)
Putative molybdate-dependent transcriptional regulator
 
MODB
(NRULE_0325)
Molybdate ABC transporter permease proteinIntca_2875
 
MODC
(NRULE_0326)
Molybdate ABC transporter ATP-binding protein
Naphthalene degradation (via hydroxylation by dioxygenase)(NFUNC_0067)
RequireA
RHDA
(NRULE_0048)
Ring-hydroxylating dioxygenase alpha subunit
RHDB
(NRULE_0049)
Ring-hydroxylating dioxygenase beta subunit
CDDH
(NRULE_0056)
Cis-dihydrodiol dehydrogenase
EDIO
(NRULE_0058)
extradiol dioxygenaseIntca_1103 Intca_0552
NAHD
(NRULE_0171)
2-hydroxychromene-2-carboxylate isomerase
NAHE
(NRULE_0172)
Trans-O-hydroxybenzylidenepyruvate hydratase-aldolase
NAHF
(NRULE_0173)
Salicylaldehyde dehydrogenase
NAHG
(NRULE_0190)
Salicylate hydroxylase
B
RHDA
(NRULE_0048)
Ring-hydroxylating dioxygenase alpha subunit
RHDB
(NRULE_0049)
Ring-hydroxylating dioxygenase beta subunit
CDDH
(NRULE_0056)
Cis-dihydrodiol dehydrogenase
EDIO
(NRULE_0058)
extradiol dioxygenaseIntca_0552 Intca_1103
NAHD
(NRULE_0171)
2-hydroxychromene-2-carboxylate isomerase
NAHE
(NRULE_0172)
Trans-O-hydroxybenzylidenepyruvate hydratase-aldolase
NAHF
(NRULE_0173)
Salicylaldehyde dehydrogenase
NAGG
(NRULE_0191)
Salicylate 5-hydroxylase alpha subunit
NAGH
(NRULE_0192)
Salicylate 5-hydroxylase beta subunit
Participant 
FDR1
(NRULE_0032)
Oxygenase electron transfer componentIntca_2187
 
FDX1
(NRULE_0034)
Putative Rieske-type ferredoxinIntca_0449 Intca_1679 Intca_1984 Intca_2070
 
FDR2
(NRULE_0057)
Ferredoxin reductaseIntca_1108
(R)-pantothenate biosynthesis(NFUNC_0030)
RequireA
PAND
(NRULE_0115)
Aspartate 1-decarboxylaseIntca_0612
PANB
(NRULE_0116)
3-methyl-2-oxobutanoate hydroxymethyltransferaseIntca_2034
PANE
(NRULE_0117)
2-dehydropantoate 2-reductaseIntca_0399
PANC
(NRULE_0118)
Pantothenate synthetaseIntca_0611
Phenol degradation(NFUNC_0028)
RequireA
MMA
(NRULE_0027)
Multicomponent monooxygenase alpha subunit
MMB
(NRULE_0028)
Multicomponent monooxygenase beta subunit
MMG1
(NRULE_0029)
Multicomponent monooxygenase gamma subunit
B
PHEA1
(NRULE_0083)
Aromatic ring hydroxylase
C
PHEA2
(NRULE_0084)
Aromatic ring hydroxylase
Participant 
FDR2
(NRULE_0057)
Ferredoxin reductaseIntca_1108
 
FDR1
(NRULE_0032)
Oxygenase electron transfer componentIntca_2187
 
MME
(NRULE_0033)
Multicomponent monooxygenase effector protein
 
FDX1
(NRULE_0034)
Putative Rieske-type ferredoxinIntca_1679 Intca_2070 Intca_1984 Intca_0449
 
FADR1
(NRULE_0101)
NADH-dependent flavin reductaseIntca_1628 Intca_3157 Intca_1892
Protocatechuate degradation (beta-ketoadipate pathway)(NFUNC_0014)
RequireA
PCAG
(NRULE_0066)
Protocatechuate 3,4-dioxygenase alpha subunit
PCAH
(NRULE_0067)
Protocatechuate 3,4-dioxygenase beta subunit
PCAB
(NRULE_0068)
3-carboxy-cis,cis-muconate cycloisomerase
PCAC
(NRULE_0069)
4-carboxymuconolactone decarboxylase
PCAD
(NRULE_0070)
3-oxoadipate enol-lactonase
PCAI
(NRULE_0072)
3-oxoadipate CoA-transferase subunit AIntca_0851
PCAJ
(NRULE_0073)
3-oxoadipate CoA-transferase subunit BIntca_0852
PCAF
(NRULE_0074)
Beta-ketoadipyl-CoA thiolaseIntca_0377
B
PCAG
(NRULE_0066)
Protocatechuate 3,4-dioxygenase alpha subunit
PCAH
(NRULE_0067)
Protocatechuate 3,4-dioxygenase beta subunit
PCAB
(NRULE_0068)
3-carboxy-cis,cis-muconate cycloisomerase
PCAL
(NRULE_0071)
3-oxoadipate enol-lactone hydrolase/4-carboxymuconolactone decarboxylase
PCAI
(NRULE_0072)
3-oxoadipate CoA-transferase subunit AIntca_0851
PCAJ
(NRULE_0073)
3-oxoadipate CoA-transferase subunit BIntca_0852
PCAF
(NRULE_0074)
Beta-ketoadipyl-CoA thiolaseIntca_0377
Riboflavin biosynthesis(NFUNC_0058)
RequireA
RIBB
(NRULE_0200)
3,4-dihydroxy-2-butanone 4-phosphate synthaseIntca_1623
RIBA
(NRULE_0201)
GTP cyclohydrolase-2Intca_1032 Intca_1623
RIBD
(NRULE_0202)
Riboflavin biosynthesis protein RibD
RIBH
(NRULE_0203)
6,7-dimethyl-8-ribityllumazine synthaseIntca_1624
RIBE
(NRULE_0204)
Riboflavin synthaseIntca_1622
Participant 
RIBF
(NRULE_0205)
Riboflavin biosynthesis protein RibFIntca_2222
Streptomycin resistance(NFUNC_0054)
RequireA
ANT6
(NRULE_0151)
Aminoglycoside 6-adenylyltransferase
B
ANT3
(NRULE_0154)
Streptomycin 3''-adenylyltransferase
C
APH6
(NRULE_0155)
Streptomycin 6-kinaseIntca_2230
Participant 
APH3
(NRULE_0156)
Aminoglycoside 3'-phosphotransferase
Toluene degradation (conversion into protocatechuate via p-cresol)(NFUNC_0007)
RequireA
MMA
(NRULE_0027)
Multicomponent monooxygenase alpha subunit
MMB
(NRULE_0028)
Multicomponent monooxygenase beta subunit
FDR1
(NRULE_0032)
Oxygenase electron transfer componentIntca_2187
MME
(NRULE_0033)
Multicomponent monooxygenase effector protein
PCHF
(NRULE_0035)
4-cresol dehydrogenase flavoprotein subunit
PCHC
(NRULE_0036)
4-cresol dehydrogenase cytochrome c subunit
PCHA
(NRULE_0037)
p-hydroxybenzaldehyde dehydrogenase
POBA
(NRULE_0038)
p-hydroxybenzoate hydroxylase
Participant 
MMG1
(NRULE_0029)
Multicomponent monooxygenase gamma subunit
 
MMG2
(NRULE_0030)
Multicomponent monooxygenase gamma subunit
 
MMG3
(NRULE_0031)
Multicomponent monooxygenase gamma subunit
 
FDX1
(NRULE_0034)
Putative Rieske-type ferredoxinIntca_0449 Intca_2070 Intca_1984 Intca_1679
Trehalose biosynthesis (from maltooligosaccharide)(NFUNC_0037)
RequireA
TREY
(NRULE_0140)
Maltooligosyl trehalose synthaseIntca_1350
TREZ
(NRULE_0141)
Malto-oligosyltrehalose trehalohydrolaseIntca_1351
Participant 
GLGX
(NRULE_0139)
Glycogen debranching enzymeIntca_2397 Intca_1349
Trehalose biosynthesis (from maltose)(NFUNC_0034)
RequireA
MAPA
(NRULE_0126)
Maltose phosphorylase
TREP
(NRULE_0127)
Alpha,alpha-trehalose phosphorylase
B
TRES
(NRULE_0128)
Trehalose synthaseIntca_2400
Trehalose biosynthesis (from NDP-glucose and glucose-6-phosphate)(NFUNC_0031)
RequireA
TPS
(NRULE_0119)
Trehalose-phosphate synthaseIntca_2909
TPP
(NRULE_0120)
Trehalose-6-phosphate phosphataseIntca_2910
Vitamin B6 biosynthesis (PdxA/PdxJ pathway)(NFUNC_0060)
RequireA
EPD
(NRULE_0208)
D-erythrose-4-phosphate dehydrogenase
PDXB
(NRULE_0209)
Erythronate-4-phosphate dehydrogenase
SERC
(NRULE_0210)
Phosphoserine aminotransferaseIntca_0746
PDXA
(NRULE_0211)
4-hydroxythreonine-4-phosphate dehydrogenase
PDXJ
(NRULE_0212)
Pyridoxine 5'-phosphate synthase
Vitamin B6 biosynthesis (PdxS/PdxT pathway)(NFUNC_0059)
RequireA
PDXS
(NRULE_0206)
Pyridoxal biosynthesis lyase PdxSIntca_1862
PDXT
(NRULE_0207)
Glutamine amidotransferase subunit PdxTIntca_1859