遺伝子 : Glycogen debranching enzyme (GLGX)

遺伝子情報

ID	NRULE_0139
遺伝子ID	GLGX
作成日	2013/02/14
タンパク質名	Protein name Full Glycogen debranching enzyme EC EC 3.2.1.- Synonym Full Glycogen operon protein GlgX
遺伝子名	glgX
遺伝子条件	TIGRFAMs; TIGR02100; hit=1
参照	Gene Ontology GO GO:0004135, F:amylo-alpha-1,6-glucosidase activity, IDA:EcoCyc GO:0043169, F:cation binding, IEA:InterPro GO:0005980, P:glycogen catabolic process, IEA:UniProtKB-UniPathway GO:0006974, P:response to DNA damage stimulus, IEP:EcoliWiki Phylogenomic databases eggNOG COG1523, - HOGENOM HOG000239197, - KO K02438, - Enzyme and pathway databases UniPathway UPA00165, - Family and domain databases InterPro IPR006047, Glyco_hydro_13_cat_dom IPR004193, Glyco_hydro_13_N IPR011837, Glycogen_debranch_debranch Pfam PF00128, Alpha-amylase, 1 PF02922, CBM_48, 1 TIGRFAMs TIGR02100, glgX_debranch, 1
配列の特徴	P15067 Escherichia coli (strain K12). ACT_SITE 336 Nucleophile (By similarity). ACT_SITE 371 Proton donor (By similarity). SITE 443 Transition state stabilizer (By similarity).
注釈	Function Hydrolyzes the alpha-1,6-glucosidic linkages in glycogen which has first been partially depolymerized by phosphorylase. Shows only very little activity with native glycogen Pathway Glycan degradation; glycogen degradation Sequence similarities Belongs to the glycosyl hydrolase 13 family
参考文献	P15067 Escherichia coli (strain K12). 8576033 Coordinate genetic regulation of glycogen catabolism and biosynthesis in Escherichia coli via the CsrA gene product. (J Bacteriol. 1996) Q9LC80 Arthrobacter sp. (strain Q36). 10669803 Cloning and nucleotide sequence of a gene encoding a glycogen debranching enzyme in the trehalose operon from Arthrobacter sp. Q36. (Biochim Biophys Acta. 2000)

関与する機能

機能名
Trehalose biosynthesis (from maltooligosaccharide)

該当CDS

学名	NBRC番号	CDS	タンパク質名
Acetobacter pasteurianus	105190	APA32_20830	Glycogen debranching enzyme GlgX
Acetobacter pasteurianus	101655	APT_1916	glycogen debranching enzyme GlgX
Acetobacter tropicalis	101654	ATPR_1604	glycogen debranching enzyme GlgX
Acidiphilium multivorum	100883	ACMV_32760	glycogen debranching enzyme
Acidobacterium capsulatum	15755	ACP_0709	glycogen debranching enzyme GlgX
Actinoplanes missouriensis	102363	AMIS_48070	putative glycogen debranching enzyme
		AMIS_60130	putative glycogen debranching enzyme
		AMIS_63900	putative glycogen debranching enzyme
Actinosynnema mirum	14064	Amir_5114	glycogen debranching enzyme GlgX
		Amir_6067	glycogen debranching enzyme GlgX
Alteromonas macleodii	102226	MASE_11145	glycogen debranching protein GlgX
Amycolatopsis mediterranei	13415	RAM_13170	glycogen debranching enzyme GlgX
		RAM_13185	glycogen debranching enzyme GlgX
		RAM_15565	glycogen debranching enzyme GlgX
Anaerolinea thermophila	100420	ANT_05210	glycogen debranching enzyme
Arcanobacterium haemolyticum	15585	Arch_0391	glycogen debranching enzyme GlgX
		Arch_0802	glycogen debranching enzyme GlgX
Arthrobacter globiformis	12137	ARGLB_047_00070	glycogen debranching enzyme
		ARGLB_080_00680	glycogen debranching enzyme
		ARGLB_085_03220	glycogen debranching enzyme
Austwickia chelonae	105200	AUCHE_02_00130	glycogen debranching enzyme
		AUCHE_05_01990	glycogen debranching enzyme
Azorhizobium caulinodans	14845	AZC_2750	glycogen debranching protein
Beutenbergia cavernae	16432	Bcav_1345	glycogen debranching enzyme GlgX
		Bcav_1973	glycogen debranching enzyme GlgX
Bradyrhizobium diazoefficiens	14792	blr6769	glycogen debranching enzyme
Candidatus Solibacter usitatus		Acid_0219	glycogen debranching enzyme GlgX
		Acid_2891	glycogen debranching enzyme GlgX
		Acid_7170	glycogen debranching enzyme GlgX
Cellulomonas fimi	15513	Celf_2110	glycogen debranching enzyme GlgX
		Celf_2759	glycogen debranching enzyme GlgX
Cellulomonas flavigena	3775	Cfla_1101	glycogen debranching enzyme GlgX
		Cfla_1743	glycogen debranching enzyme GlgX
Chitinispirillum alkaliphilum		CHISP_3327	Glycogen debranching enzyme
Chitinophaga pinensis	15968	Cpin_2576	glycogen debranching enzyme GlgX
Chthoniobacter flavus		CfE428DRAFT_1822	glycogen debranching enzyme GlgX
		CfE428DRAFT_4836	glycogen debranching enzyme GlgX
		CfE428DRAFT_5239	glycogen debranching enzyme GlgX
		CfE428DRAFT_6123	glycogen debranching enzyme GlgX
Corynebacterium ammoniagenes	12612	HMPREF0281_00079	glycogen debranching enzyme GlgX
Corynebacterium callunae	15359	H924_08870	hypothetical protein
Corynebacterium efficiens	100395	CE2010	putative glycogen debranching enzyme
Corynebacterium glutamicum	12168	Cgl2107	Pullulanase and related glycosidases
Corynebacterium glutamicum	12153	KIQ_09011	hypothetical protein
Corynebacterium matruchotii	15360	HMPREF0299_6786	glycogen debranching enzyme GlgX
Corynebacterium striatum	15291	HMPREF0308_0996	glycogen debranching enzyme GlgX
Corynebacterium terpenotabidum	14764	A606_02980	glycogen debranching protein
Cystobacter fuscus	100088	D187_000195	Glycogen debranching enzyme
		D187_010281	Glycogen debranching enzyme
Deinococcus proteolyticus	101906	Deipr_0622	glycogen debranching enzyme GlgX
Edwardsiella tarda	105688	ET1_13_00230	glycogen debranching enzyme
Enterobacter aerogenes	13534	EAE_05390	glycogen debranching enzyme
Enterobacter cloacae subsp. cloacae	13535	ECL_01951	glycogen debranching enzyme GlgX
		ECL_04793	glycogen debranching enzyme
Enterobacter hormaechei	105718	HMPREF9086_2406	glycogen debranching enzyme GlgX
		HMPREF9086_4261	glycogen debranching enzyme GlgX
Escherichia coli	3972	EcolC_0281	glycogen debranching enzyme GlgX
Escherichia coli	13500	WFL_18035	glycogen debranching enzyme
Escherichia coli	12713	Y75_3790	glycogen debranching enzyme
Escherichia fergusonii	102419	EFER_3408	glycogen debranching enzyme
Escherichia hermannii	105704	EH105704_07_00840	glycogen debranching enzyme
		EH105704_10_00880	glycogen debranching enzyme
Fischerella sp.		PCC9339_RS0107460	hypothetical protein
		PCC9339_RS0119465	hypothetical protein
		PCC9339_RS0133210	glycogen debranching protein
Gemmata obscuriglobus		GEMOB_RS12450	glycogen debranching protein
		GEMOB_RS28385	glycogen-debranching protein
Geodermatophilus obscurus	13315	Gobs_1958	glycogen debranching enzyme GlgX
		Gobs_4097	glycogen debranching enzyme GlgX
Gluconacetobacter hansenii	14816	GXY_08055	glycogen debranching enzyme GlgX
		GXY_09794	glycogen debranching enzyme GlgX
Gluconobacter frateurii	101659	GfraN1_010100009262	glycogen debranching protein GlgX
Gordonia aichiensis	108223	GOACH_16_01140	glycogen debranching enzyme
		GOACH_58_01030	glycogen debranching enzyme
Gordonia alkanivorans	16433	GOALK_084_00170	glycogen debranching enzyme
Gordonia amarae	15530	GOAMR_40_00010	glycogen debranching enzyme
Gordonia amicalis	100051	GOAMI_54_00170	glycogen debranching enzyme
Gordonia bronchialis	16047	Gbro_2978	glycogen debranching enzyme GlgX
Gordonia effusa	100432	GOEFS_065_00060	glycogen debranching enzyme
Gordonia namibiensis	108229	GONAM_46_00180	glycogen debranching enzyme
Gordonia otitidis	100426	GOOTI_065_00610	glycogen debranching enzyme
		GOOTI_099_00100	glycogen debranching enzyme
Gordonia polyisoprenivorans	16320	GOPIP_059_00020	glycogen debranching enzyme
Gordonia rhizosphera	16068	GORHZ_053_00330	glycogen debranching enzyme
		GORHZ_073_00200	glycogen debranching enzyme TreX
Gordonia rubripertincta	101908	GORBP_068_00520	glycogen debranching enzyme
Gordonia soli	108243	GS4_30_00690	glycogen debranching enzyme
Gordonia sputi	100414	GOSPT_058_00850	glycogen debranching enzyme
		GOSPT_072_00120	glycogen debranching enzyme
Gordonia terrae	100016	GOTRE_063_00300	glycogen debranching enzyme
Intrasporangium calvum	12989	Intca_1349	isoamylase
		Intca_2397	glycogen debranching enzyme GlgX
Jonesia denitrificans	15587	Jden_1726	glycogen debranching enzyme GlgX
Kineococcus radiotolerans	101839	Krad_1306	glycogen debranching enzyme GlgX
		Krad_3073	glycogen debranching enzyme GlgX
		Krad_3835	glycogen debranching enzyme GlgX
Kineosphaera limosa	100340	KILIM_011_00480	glycogen debranching enzyme
		KILIM_025_00350	putative glycogen debranching enzyme
Kitasatospora setae	14216	KSE_20060	putative glycogen debranching enzyme
		KSE_50810	putative glycogen debranching enzyme
Klebsiella pneumoniae	14438	KPR_5120
Klebsiella pneumoniae subsp. rhinoscleromatis	105682	HMPREF0484_0751	glycogen debranching enzyme GlgX
Kocuria rhizophila	103217	KRH_06550	glycogen debranching enzyme
		KRH_18670	putative glycogen debranching enzyme
Kribbella flavida	14399	Kfla_0736	glycogen debranching enzyme GlgX
		Kfla_4935	glycogen debranching enzyme GlgX
Kytococcus sedentarius	15357	Ksed_09570	glycogen debranching enzyme GlgX
Magnetospirillum gryphiswaldense	15271	MGR_0453	Glycoside hydrolase, family 13, N-terminal:Alpha amylase, catalytic region
Magnetospirillum magnetotacticum	15272	Magn03009875	COG1523: Type II secretory pathway, pullulanase PulA and related glycosidases
Marinomonas mediterranea	103028	Marme_3129	glycogen debranching enzyme GlgX
Methylacidiphilum infernorum		Minf_0536	Type II secretory pathway, pullulanase PulA or related glycosidase
Methylobacterium radiotolerans	15690	Mrad2831_1151	glycogen debranching enzyme GlgX
		Mrad2831_1486	glycogen debranching enzyme GlgX
Micrococcus luteus	3333	Mlut_16760	glycogen debranching enzyme GlgX
Microlunatus phosphovorus	101784	MLP_29690	glycogen debranching enzyme
		MLP_36670	glycogen debranching enzyme
Micromonospora aurantiaca	16155	Micau_2849	glycogen debranching enzyme GlgX
Mobilicoccus pelagius	104925	MOPEL_036_00100	glycogen debranching enzyme
		MOPEL_130_00060	glycogen debranching enzyme
Nakamurella multipartita	105858	Namu_2795	glycogen debranching enzyme GlgX
		Namu_3089	glycogen debranching enzyme GlgX
Niastella koreensis	106392	Niako_3122	glycogen debranching enzyme GlgX
Nitriliruptor alkaliphilus		NitalDRAFT_3915	glycogen operon protein
Nitrospina gracilis		NITGR_290078	Glycogen debranching enzyme GlgX
Nocardiopsis dassonvillei	14626	Ndas_2820	glycogen debranching enzyme GlgX
Pelobacter propionicus	103807	Ppro_0419	isoamylase
Photobacterium damselae subsp. damselae corrig.	15633	VDA_002815	glycogen debranching enzyme
Planctomyces brasiliensis	103401	Plabr_2631	isoamylase
Propionibacterium acidipropionici	12425	PACID_19100	Glycogen debranching enzyme GlgX
Propionibacterium avidum	15671	HMPREF9153_1838	glycogen debranching enzyme GlgX
Providencia alcalifaciens	105687	PROVALCAL_01516	glycogen debranching enzyme GlgX
Pseudomonas putida	100650	PP_4055	glycogen operon protein GlgX
Pseudomonas stutzeri	14165	PSTAB_2030	glycogen operon protein GlgX
Rahnella aquatilis	105701	Rahaq2_0227	glycogen debranching enzyme GlgX
		Rahaq2_2353	glycogen debranching enzyme GlgX
Renibacterium salmoninarum	15589	RSal33209_0413	isoamylase
		RSal33209_1717	isoamylase
Rhizobium etli	15573	RHE_CH03598	glycosyl hydrolase (glycogen debranching) protein
		RHE_PE00208	glycosyl hydrolase (glycogen debranching) protein
Rhizobium sp.	101917	NGR_b11120	glycogen operon-like protein GlgX
		NGR_c28990	glycosyl hydrolase
Rhizobium tropici	15247	RTCIAT899_CH15315	glycogen debranching enzyme GlgX
Rhodobacter capsulatus	16581	RCAP_rcc01838	glycogen debranching enzyme GlgX
Rhodobacter sphaeroides	12203	RSP_2226	Glycosidase
		RSP_2449	Putative glycosyl hydrolase
		RSP_2884	glycogen debranching enzyme
Rhodococcus erythropolis	100887	RER_23610	probable glycogen debranching enzyme
		RER_35060	probable glycogen debranching enzyme
Rhodococcus opacus	108011	ROP_07840	glycogen debranching enzyme
		ROP_65030	glycogen debranching enzyme
Roseobacter denitrificans	15277	RD1_2872	glycogen debranching enzyme
Roseobacter litoralis	15278	RLO149_c015680	glycogen debranching enzyme
Rubrobacter xylanophilus	100952	Rxyl_0317	Glycogen debranching enzyme GlgX
Saccharothrix espanaensis	15066	BN6_61820	Glycogen operon protein, GlgX family
		BN6_72710	Glycogen operon protein, GlgX family
Salinibacter ruber		SRU_0849	glycogen debranching enzyme GlgX
Sanguibacter keddieii	16158	Sked_10400	glycogen debranching enzyme GlgX
		Sked_16660	glycogen debranching enzyme GlgX
Serratia odorifera	102598	HMPREF0758_1063	glycogen debranching enzyme GlgX
Shimwellia blattae	105725	EB105725_06_00150	glycogen debranching enzyme
Sphingobium japonicum	101211	SJA_C1-21930	glycogen operon protein GlgX
Sphingobium sp.	103272	SLG_08630	glycogen debranching enzyme
		SLG_10410	glycogen debranching enzyme
Sporichthya polymorpha	12702	Spopo_30_18120	Putative glycogen debranching enzyme
		Spopo_31_11050	Isoamylase
		Spopo_31_15840	Glycogen debranching enzyme
Starkeya novella	14993	Snov_2556	glycogen debranching enzyme GlgX
		Snov_4184	glycogen debranching enzyme GlgX
Streptomyces avermitilis	14893	SAV2151	putative glycogen debranching enzyme
		SAV2789	putative glycosyl hydrolase
Streptomyces cattleya	14057	SCAT_4262	Glycogen operon protein glgX homolog
		SCAT_4716	Glycogen operon protein glgX homolog
		SCAT_p1240	Glycogen operon protein glgX homolog
Streptomyces clavuligerus	13307	SCLAV_4880	Glycogen debranching enzyme
Streptomyces ghanaensis	15414	SSFG_01617	glycogen debranching enzyme
		SSFG_02235	glycogen debranching enzyme
		SSFG_06481	glycogen debranching enzyme
Streptomyces mobaraensis	13819	H340_21661	glycogen debranching protein
		H340_29479	glycosyl hydrolase
Streptomyces pristinaespiralis	13074	SSDG_00715	glycogen debranching enzyme
		SSDG_05563	glycogen debranching enzyme
Streptomyces purpureus	13925	STRPU_14_02590	Glycogen debranching enzyme
		STRPU_16_03320	Glycogen debranching enzyme
Streptomyces sviceus	13980	SSEG_00594	glycogen debranching enzyme GlgX
		SSEG_07982	glycogen debranching enzyme GlgX
		SSEG_10504	glycogen debranching enzyme GlgX
Streptomyces venezuelae	13096	SVEN_5112	Glycogen debranching enzyme
		SVEN_5898	Glycogen debranching enzyme
Streptosporangium roseum	3776	Sros_1601	glycogen debranching protein GlgX
		Sros_6707	glycogen debranching protein GlgX
Sulfolobus tokodaii	100140	STK_09280	glycogen debranching enzyme TreX
Synechococcus elongatus		Synpcc7942_0086	isoamylase, glycosyl hydrolase family 13
Synechocystis sp.		slr0237	glycogen operon protein; GlgX
		slr1857	glycogen operon protein; GlgX
Thauera linaloolentis	102519	C666_19020	glycogen debranching protein GlgX
Thermobispora bispora	14880	Tbis_2253	glycogen debranching enzyme GlgX
Thermomonospora curvata	15933	Tcur_1775	glycogen debranching enzyme GlgX
Thermotoga lettingae	107922	Tlet_0139	glycogen debranching enzyme GlgX
Thermotoga thermarum	107925	Theth_1308	isoamylase
Tsukamurella paurometabola	16120	Tpau_2939	glycogen debranching enzyme GlgX
Vibrio alginolyticus	15630	N646_3360	glycogen operon protein GlgX
Vibrio ichthyoenteri	15847	VII00023_11926	type II secretory pathway, pullulanase
Vibrio metschnikovii	103153	VIB_002522	glycogen debranching enzyme
Vibrio orientalis	15638	VIOR3934_20606	Isoamylase
Vibrio tubiashii	15644	VITU9109_15193	Isoamylase
Vibrio vulnificus	15645	B736_13970	glycogen-debranching protein
Xenococcus sp.		Xen7305DRAFT_00004430	glycogen debranching enzyme GlgX
		Xen7305DRAFT_00036400	glycogen debranching enzyme GlgX
		Xen7305DRAFT_00039940	glycogen debranching enzyme GlgX
Xylanimonas cellulosilytica	107835	Xcel_2413	glycogen debranching enzyme GlgX
Yersinia bercovieri	105717	yberc0001_3530	Glycogen debranching enzyme
Yersinia rohdei	105715	yrohd0001_13520	Glycogen debranching enzyme
Zimmermannella faecalis	15706	G328_10005	hypothetical protein
		G328_10150	hypothetical protein