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遺伝子 : Rubredoxin (RUBA)

遺伝子情報

ID NRULE_0039
遺伝子ID RUBA
作成日 2012/09/07
タンパク質名
Protein name
Full
Rubredoxin
遺伝子名 rubA
遺伝子条件 PFAM; PF00301; hit=1
参照
Gene Ontology
GO
GO:0005506, F:iron ion binding, IEA:InterPro
GO:0022900, P:electron transport chain, IEA:UniProtKB-KW
GO:0043448, P:alkane catabolic process, IEA:UniProtKB-UniPathway.
GO:0055114, P:oxidation-reduction process, IEA:UniProtKB-KW
Phylogenomic databases
eggNOG
COG1773, -
Enzyme and pathway databases
UniPathway
UPA00191, -
Family and domain databases
InterPro
IPR024934, Rubredoxin-like_dom
IPR004039, Rubredoxin-type_fold
IPR024935, Rubredoxin_dom
IPR018527, Rubredoxin_Fe_BS
Pfam
PF00301, Rubredoxin, 1
PIRSF
PIRSF000071, Rubredoxin, 1
PRINTS
PR00163, RUBREDOXIN
PROSITE
PS00202, RUBREDOXIN, 1
PS50903, RUBREDOXIN_LIKE, 1
配列の特徴
P00272 Pseudomonas oleovorans.
METAL6Iron 1.
METAL9Iron 1.
METAL39Iron 1.
METAL42Iron 1.
METAL124Iron 2.
METAL127Iron 2.
METAL157Iron 2.
METAL160Iron 2.
P15412 Desulfovibrio vulgaris (strain Miyazaki F / DSM 19637).
METAL6Iron 2.
METAL9Iron 2.
METAL39Iron 2.
METAL42Iron 2.
注釈
Function
Rubredoxin is a small nonheme, iron protein lacking acid-labile sulfide. Its single Fe, chelated to 4 Cys, functions as an electron acceptor.
Cofactor
Binds 1-2 Fe(3+) ions per subunit
Pathway
Hydrocarbon metabolism; alkane degradation.
Sequence similarities
Belongs to the rubredoxin family
Contains 1-2 rubredoxin-like domains
参考文献
P00272 Pseudomonas oleovorans.
2647719
The Pseudomonas oleovorans alkBAC operon encodes two structurally related rubredoxins and an aldehyde dehydrogenase. (J Biol Chem. 1989)
11872724
Rubredoxins involved in alkane oxidation. (J Bacteriol. 2002)
Q93DN1 Rhodococcus sp. (strain Q15).
12450813
Gene cloning and characterization of multiple alkane hydroxylase systems in Rhodococcus strains Q15 and NRRL B-16531. (Appl Environ Microbiol. 2002)
P15412 Desulfovibrio vulgaris (strain Miyazaki F / DSM 19637).
2561345
Amino acid sequence and function of rubredoxin from Desulfovibrio vulgaris Miyazaki. (Biochimie. 1989)



関与する機能

機能名
n-alkane hydroxylation

該当CDS

データダウンロード
学名 NBRC番号 CDS タンパク質名
Acaryochloris marina102967AM1_2632rubredoxin
Acetobacter tropicalis101654ATPR_2351rubredoxin-type Fe(Cys)4 protein
Acidiphilium multivorum100883ACMV_03630putative rubredoxin
Acinetobacter radioresistens102413ACRAD_02_01980rubredoxin
Acinetobacter sp.100985ACT4_013_00280rubredoxin
Amycolatopsis azurea14573C791_5134Alkane-1 monooxygenase
Amycolatopsis mediterranei13415RAM_32810alkane 1-monooxygenase
Aquimarina agarilytica107695AagaZ_020100005825rubredoxin-type fe(cys)4 protein
Archaeoglobus profundus100127Arcpr_0632Rubredoxin-type Fe(Cys)4 protein
Arcpr_0874hypothetical protein
Atopobium rimae15546ATORI0001_1101rubredoxin
Azorhizobium caulinodans14845AZC_0605rubredoxin
Bacteroides vulgatus14291BVU_1429putative rubredoxin
Bradyrhizobium diazoefficiens14792bsl6935HupI protein
Brevibacillus brevis100599BBR47_20190hypothetical protein
Caldanaerobacter subterraneus subsp. tengcongensis100824TTE2154Rubredoxin
Caldisericum exile104410CSE_08860rubredoxin
Calditerrivibrio nitroreducens101217Calni_0056Rubredoxin-type Fe(Cys)4 protein
Candidatus Korarchaeum cryptofilumKcr_0610Rubredoxin-type Fe(Cys)4 protein
Caulobacter segnis15250Cseg_1213Rubredoxin-type Fe(Cys)4 protein
Cellulophaga lytica14961Celly_0730Rubredoxin-type Fe(Cys)4 protein
Chitinispirillum alkaliphilumCHISP_0226Rubredoxin
Chitinivibrio alkaliphilusCALK_1954Rubredoxin
Chitinophaga pinensis15968Cpin_2379Rubredoxin-type Fe(Cys)4 protein
Chlorobaculum tepidum103806CT1100rubredoxin
CT1101rubredoxin
CT2024rubredoxin
Chlorobium limicola103803Clim_0177Rubredoxin-type Fe(Cys)4 protein
Clim_1240Rubredoxin-type Fe(Cys)4 protein
Chromobacterium violaceum12614CV_0152rubredoxin
Clostridium acetobutylicum13948CA_C2778Rubredoxin
Clostridium clariflavum101661Clocl_4111rubredoxin
Clostridium kluyveri12016CKR_2483hypothetical protein
Clostridium thermocellum103400Cthe_2164Rubredoxin-type Fe(Cys)4 protein
Cthe_3119flavin reductase domain protein FMN-binding protein
Conexibacter woesei100937Cwoe_1559Rubredoxin-type Fe(Cys)4 protein
Cwoe_5738Rubredoxin-type Fe(Cys)4 protein
Congregibacter litoralis104960KT71_05015NAD(P)H-nitrite reductase
KT71_10637Rubredoxin
Coprobacillus sp.HMPREF1021_01118hypothetical protein
Corynebacterium terpenotabidum14764A606_11485high molecular weight rubredoxin
A606_11490high molecular weight rubredoxin
Cupriavidus metallidurans102507Rmet_0668Rubredoxin
Rmet_1289HoxR Rubredoxin (Rd)Electron transport; (belongs to CMGI-2)
Rmet_3710putative rubredoxin-type Fe(Cys)4 protein
Rmet_3952Rubredoxin-type Fe(Cys)4 protein
Cystobacter fuscus100088D187_004436Rubredoxin
Cytophaga hutchinsonii15051CHU_1321possible rubredoxin
Deferribacter desulfuricans101012DEFDS_0573rubredoxin
Desulfovibrio magneticus104933DMR_19810rubredoxin
DMR_35860rubredoxin
Desulfovibrio vulgaris subsp. vulgaris104121DVU_3093rubredoxin-like protein
DVU_3184rubredoxin
Dictyoglomus turgidumDtur_0146Rubredoxin-type Fe(Cys)4 protein
Edwardsiella tarda105688ET1_27_00080putative rubredoxin
Elusimicrobium minutumEmin_0014Rubredoxin Rdl
Enterobacter aerogenes13534EAE_01595anaerobic nitric oxide reductase flavorubredoxin
Enterobacter cloacae subsp. cloacae13535ECL_04047anaerobic nitric oxide reductase flavorubredoxin
Enterobacter hormaechei105718HMPREF9086_3589anaerobic nitric oxide reductase flavorubredoxin
Escherichia coli3972EcolC_1002beta-lactamase domain protein
Escherichia coli13500WFL_14195anaerobic nitric oxide reductase flavorubredoxin
Escherichia coli12713Y75_2688flavorubredoxin oxidoreductase
Escherichia fergusonii102419EFER_0368flavorubredoxin oxidoreductase
Escherichia hermannii105704EH105704_06_01940anaerobic nitric oxide reductase flavorubredoxin
Fibrobacter succinogenesFisuc_1369Rubredoxin-type Fe(Cys)4 protein
Fisuc_2091Rubredoxin-type Fe(Cys)4 protein
Finegoldia magnaFMG_1044rubredoxin
Fischerella sp.PCC9339_RS0119790rubrerythrin
PCC9339_RS0120885rubredoxin
Flavobacterium johnsoniae14942Fjoh_4634Rubredoxin-type Fe(Cys)4 protein
Frateuria aurantia3245Fraau_0513rubredoxin
Fusobacterium nucleatum subsp. NucleatumFN1424ACYL-COA dehydrogenase, short-chain specific
Gloeobacter violaceusglr0854rubredoxin
Gordonia aichiensis108223GOACH_04_01410alkane-1-monooxygenase
Gordonia amarae15530GOAMR_02_00080alkane-1-monooxygenase
Gordonia amicalis100051GOAMI_37_00500rubredoxin
GOAMI_37_00510rubredoxin
Gordonia araii100433GOARA_047_00200rubredoxin
GOARA_047_00210rubredoxin
Gordonia bronchialis16047Gbro_4212Alkane 1-monooxygenase
Gordonia effusa100432GOEFS_014_00050rubredoxin
GOEFS_014_00060rubredoxin
Gordonia hirsuta16056GOHSU_25_00310rubredoxin
GOHSU_25_00320alkane-1-monooxygenase
Gordonia otitidis100426GOOTI_008_00100alkane-1-monooxygenase
Gordonia sihwensis108236GSI01S_17_00150rubredoxin
GSI01S_17_00160rubredoxin
Gordonia soli108243GS4_03_00950rubredoxin
GS4_03_00960rubredoxin
Gordonia sputi100414GOSPT_119_00610alkane-1-monooxygenase
Gordonia terrae100016GOTRE_037_00300rubredoxin
GOTRE_037_00310rubredoxin
Hylemonella gracilis14920HGR_10300rubredoxin
Hyphomonas neptunium14232HNE_0571rubredoxin
Klebsiella pneumoniae14438KPR_1245
Klebsiella pneumoniae subsp. rhinoscleromatis105682HMPREF0484_4064rubredoxin
Labrenzia aggregata16684SIAM614_29556putative hydrogenase
Lentisphaera araneosaLNTAR_10566Rubredoxin
Magnetospirillum magnetotacticum15272Magn03010383COG1773: Rubredoxin
Methanocaldococcus jannaschii100440MJ_0735rubredoxin 1 (rd1)
MJ_0740rubredoxin 2 (rd2)
Methanocella paludicola101707MCP_2757rubredoxin
Methanococcus maripaludis101832MMP0303rubredoxin
MMP0496Glutamate synthase subunit-related
Methanococcus maripaludisMmarC5_1371Rubredoxin-type Fe(Cys)4 protein
Niastella koreensis106392Niako_5318Rubredoxin-type Fe(Cys)4 protein
Nitrosomonas europaea14298NE1426Rubredoxin:Rubredoxin-type Fe(Cys)4 protein
Nostoc sp.alr1174rubrerythrin
alr3843rubredoxin
asl4557rubredoxin
Oscillibacter valericigenes101213OBV_08870rubredoxin
OBV_16090acyl-CoA dehydrogenase/protein FixB
OBV_40850rubredoxin
Paenibacillus peoriae15541PpeoK3_010100011872Rubredoxin 3 (Rd 3)
Paenibacillus polymyxa15309PPT_26220rubredoxin
Pelobacter carbinolicus103641Pcar_2796rubredoxin
Pelobacter propionicus103807Ppro_0090Rubredoxin-type Fe(Cys)4 protein
Ppro_0466Rubredoxin-type Fe(Cys)4 protein
Photobacterium damselae subsp. damselae corrig.15633VDA_001641anaerobic nitric oxide reductase flavorubredoxin
Prochlorococcus marinus subsp. marinusPro_0326Rubredoxin
Pro_0379Rubredoxin
Pseudomonas putida100650PP_5315rubredoxin
PP_5371rubredoxin/rubredoxin reductase
Pseudomonas stutzeri14165PSTAB_0468rubredoxin reductase
Rhodobacter capsulatus16581RCAP_rcc00774rubredoxin HupJ
Rhodobacter sphaeroides12203RSP_0503HupJ, contains rubredoxin domain
Rhodococcus erythropolis100887RER_07470rubredoxin
RER_07480rubredoxin
RER_21630rubredoxin
RER_21640rubredoxin
Rhodococcus opacus108011ROP_22580rubredoxin
ROP_22590rubredoxin
ROP_pROB01-04360rubredoxin
ROP_pROB01-04370rubredoxin
ROP_pROB02-02010rubredoxin
Selenomonas ruminantium subsp. lactilytica103574SELR_19090putative rubredoxin
Serratia odorifera102598HMPREF0758_0910rubredoxin
Shimwellia blattae105725EB105725_07_00980anaerobic nitric oxide reductase flavorubredoxin
Solitalea canadensis15130Solca_1986rubredoxin
Synechococcus elongatusSynpcc7942_1179rubredoxin
Synpcc7942_1649rubrerythrin
Synechocystis sp.slr2033rubredoxin
Thauera linaloolentis102519C666_06430RubB protein
Thermanaerovibrio acidaminovoransTaci_1125Rubredoxin-type Fe(Cys)4 protein
Thermococcus sp.GQS_00695rubredoxin
Thermodesulfobacterium communeHL41_04620rubredoxin
HL41_05935hypothetical protein
HL41_06625rubredoxin
Thermodesulfobium narugense100082Thena_0452Rubredoxin-type Fe(Cys)4 protein
Thena_1347Rubredoxin-type Fe(Cys)4 protein
Thermodesulfovibrio yellowstoniiTHEYE_A1599rubredoxin
THEYE_A1651rubredoxin
Thermomonospora curvata15933Tcur_0559Rubredoxin-type Fe(Cys)4 protein
Thermotoga lettingae107922Tlet_1612Rubredoxin-type Fe(Cys)4 protein
Thermotoga maritima100826TM_0659rubredoxin
Thermotoga naphthophila104846Tnap_0455Rubredoxin-type Fe(Cys)4 protein
Thermotoga neapolitana107923CTN_1927Rubredoxin-type Fe(Cys)4 protein
Thermotoga petrophila104847Tpet_0272Rubredoxin-type Fe(Cys)4 protein
Thermotoga thermarum107925Theth_0071Rubredoxin-type Fe(Cys)4 protein
Tsukamurella paurometabola16120Tpau_2748Rubredoxin-type Fe(Cys)4 protein
Tpau_2749Rubredoxin-type Fe(Cys)4 protein
Vibrio alginolyticus15630N646_3138hypothetical protein
N646_3145rubredoxin/rubredoxin reductase
Vibrio orientalis15638VIOR3934_21171anaerobic nitric oxide reductase flavorubredoxin
Xenococcus sp.Xen7305DRAFT_00011810rubredoxin
Xen7305DRAFT_00021200rubredoxin
Xen7305DRAFT_00039730rubredoxin